Wall clock time and date at job start Tue Mar 31 2020 11:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42901 * 109.46860 * 2 1 4 4 C 1.42899 * 113.99723 * 180.02562 * 3 2 1 5 5 H 1.09003 * 112.88114 * 338.18830 * 4 3 2 6 6 C 1.53915 * 113.65182 * 109.50246 * 4 3 2 7 7 C 1.53922 * 87.22337 * 89.62983 * 6 4 3 8 8 H 1.08994 * 113.65587 * 139.44436 * 7 6 4 9 9 N 1.46500 * 113.64597 * 270.37621 * 7 6 4 10 10 C 1.38864 * 119.99917 * 255.49096 * 9 7 6 11 11 C 1.39563 * 119.84162 * 179.97438 * 10 9 7 12 12 C 1.36342 * 120.15972 * 179.97438 * 11 10 9 13 13 C 1.40889 * 119.83606 * 0.02562 * 12 11 10 14 14 C 1.41138 * 120.15406 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00239 * 24.75295 * 14 13 12 16 16 C 1.39868 * 119.99813 * 205.03356 * 14 13 12 17 17 N 1.30898 * 120.00027 * 17.70522 * 16 14 13 18 18 Si 1.86799 * 119.99888 * 197.70677 * 16 14 13 19 19 H 1.48497 * 109.47131 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46889 * 119.99876 * 18 16 14 21 21 H 1.48498 * 109.46921 * 239.99938 * 18 16 14 22 22 C 1.40888 * 119.68784 * 0.27961 * 13 12 11 23 23 C 1.36336 * 119.83419 * 359.43372 * 22 13 12 24 24 C 1.53019 * 86.85144 * 24.86252 * 7 6 4 25 25 C 1.53567 * 115.13600 * 218.15673 * 24 7 6 26 26 C 1.55061 * 103.98671 * 206.85648 * 25 24 7 27 27 C 1.54951 * 102.85464 * 37.30862 * 26 25 24 28 28 C 1.53174 * 115.37183 * 92.15327 * 24 7 6 29 29 H 1.09004 * 109.47312 * 299.99680 * 1 2 3 30 30 H 1.09002 * 109.47484 * 60.00337 * 1 2 3 31 31 H 1.09003 * 109.47072 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47081 * 239.99874 * 2 1 3 33 33 H 1.09008 * 109.47069 * 119.99770 * 2 1 3 34 34 H 1.08991 * 113.59375 * 335.04219 * 6 4 3 35 35 H 1.09008 * 113.66186 * 204.21760 * 6 4 3 36 36 H 0.96997 * 120.00612 * 75.49427 * 9 7 6 37 37 H 1.07999 * 119.92332 * 359.96204 * 11 10 9 38 38 H 1.07999 * 120.07948 * 179.97438 * 12 11 10 39 39 H 0.96999 * 120.00374 * 180.02562 * 17 16 14 40 40 H 1.07998 * 120.07752 * 179.70481 * 22 13 12 41 41 H 1.08004 * 119.92143 * 180.28120 * 23 22 13 42 42 H 1.09001 * 110.53122 * 325.48615 * 25 24 7 43 43 H 1.09001 * 110.52396 * 88.22861 * 25 24 7 44 44 H 1.09002 * 110.73507 * 278.96787 * 26 25 24 45 45 H 1.08993 * 110.73565 * 155.65238 * 26 25 24 46 46 H 1.09001 * 110.47614 * 203.76628 * 27 26 25 47 47 H 1.08998 * 110.47965 * 81.13984 * 27 26 25 48 48 H 1.09006 * 110.08864 * 248.87583 * 28 24 7 49 49 H 1.08994 * 110.09619 * 10.46414 * 28 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.9270 0.5641 0.3722 6 6 4.0086 1.9783 -1.3297 7 6 3.8572 3.3984 -0.7556 8 1 4.6951 4.0556 -0.9879 9 7 2.5570 4.0112 -1.0388 10 6 2.4505 4.9948 -2.0132 11 6 1.2102 5.5759 -2.2807 12 6 1.0983 6.5426 -3.2356 13 6 2.2386 6.9541 -3.9535 14 6 2.1306 7.9545 -4.9431 15 1 1.3273 8.6749 -4.8973 16 6 3.0605 8.0094 -5.9865 17 7 3.8060 6.9674 -6.2542 18 14 3.2385 9.5699 -6.9978 19 1 2.2883 10.5953 -6.4970 20 1 4.6272 10.0819 -6.8775 21 1 2.9419 9.2730 -8.4222 22 6 3.4863 6.3583 -3.6825 23 6 3.5843 5.3970 -2.7208 24 6 3.9442 2.7561 0.6306 25 6 3.0234 3.3723 1.6940 26 6 3.7518 3.0850 3.0324 27 6 5.2447 3.2641 2.6578 28 6 5.3510 2.6803 1.2317 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 3.3671 1.7846 -2.1893 35 1 5.0445 1.6850 -1.5003 36 1 1.7705 3.7299 -0.5456 37 1 0.3368 5.2591 -1.7300 38 1 0.1377 6.9912 -3.4419 39 1 4.4512 7.0055 -6.9775 40 1 4.3636 6.6656 -4.2324 41 1 4.5409 4.9426 -2.5087 42 1 2.9227 4.4462 1.5365 43 1 2.0462 2.8897 1.6793 44 1 3.5573 2.0658 3.3665 45 1 3.4561 3.8054 3.7950 46 1 5.8800 2.7069 3.3463 47 1 5.5140 4.3202 2.6586 48 1 5.6841 1.6432 1.2754 49 1 6.0454 3.2722 0.6356 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085679619.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:08 Heat of formation + Delta-G solvation = -24.935614 kcal Electronic energy + Delta-G solvation = -26875.558708 eV Core-core repulsion = 23380.702272 eV Total energy + Delta-G solvation = -3494.856436 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.79490 -39.48802 -38.03360 -36.55166 -35.33351 -33.68401 -31.74153 -31.33760 -30.28237 -29.41063 -27.72878 -26.52262 -25.11371 -23.74750 -22.97777 -22.62862 -21.73948 -21.34905 -19.24328 -19.14712 -18.00241 -17.29563 -16.95000 -16.81562 -16.72197 -16.31490 -15.82270 -15.41633 -14.93697 -14.69492 -14.32681 -14.29896 -14.18638 -14.03567 -13.85389 -13.57654 -13.35047 -13.26181 -12.94886 -12.81629 -12.74656 -12.68930 -12.31119 -12.25571 -11.95942 -11.94451 -11.86473 -11.76170 -11.54393 -11.40459 -11.38382 -11.15073 -10.97456 -10.87161 -10.24776 -10.17202 -9.39330 -8.53528 -8.10382 -5.98552 1.11215 1.19533 1.40032 1.54604 1.58647 2.28226 2.51361 2.84852 2.97436 3.52852 3.61009 3.80175 3.83639 3.94155 4.09650 4.18371 4.21811 4.33059 4.39171 4.43403 4.50437 4.51490 4.59853 4.61423 4.69633 4.76899 4.82600 4.85849 4.96184 5.01754 5.03792 5.04520 5.08223 5.13439 5.20446 5.26044 5.27295 5.30506 5.33918 5.40633 5.47016 5.47555 5.53394 5.73092 5.83532 5.98927 6.19993 6.39194 6.43734 6.71548 6.93153 7.09836 7.19371 7.38303 8.49996 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.017350 B = 0.003201 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.481255 B = 8745.161974 C = 9416.450090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 O -0.380 6.380 4 C 0.089 3.911 5 H 0.092 0.908 6 C -0.185 4.185 7 C 0.145 3.855 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.120 3.880 11 C -0.170 4.170 12 C -0.194 4.194 13 C 0.034 3.966 14 C -0.506 4.506 15 H 0.066 0.934 16 C 0.032 3.968 17 N -0.843 5.843 18 Si 0.977 3.023 19 H -0.261 1.261 20 H -0.266 1.266 21 H -0.268 1.268 22 C -0.140 4.140 23 C -0.175 4.175 24 C -0.080 4.080 25 C -0.106 4.106 26 C -0.118 4.118 27 C -0.121 4.121 28 C -0.096 4.096 29 H 0.061 0.939 30 H 0.047 0.953 31 H 0.089 0.911 32 H 0.045 0.955 33 H 0.064 0.936 34 H 0.049 0.951 35 H 0.106 0.894 36 H 0.396 0.604 37 H 0.110 0.890 38 H 0.095 0.905 39 H 0.281 0.719 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.049 0.951 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.066 0.934 46 H 0.083 0.917 47 H 0.058 0.942 48 H 0.086 0.914 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.609 -14.549 16.563 22.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.022 4.022 3 O -0.299 6.299 4 C 0.031 3.969 5 H 0.110 0.890 6 C -0.224 4.224 7 C 0.038 3.962 8 H 0.088 0.912 9 N -0.353 5.353 10 C 0.021 3.979 11 C -0.192 4.192 12 C -0.214 4.214 13 C 0.031 3.969 14 C -0.538 4.538 15 H 0.084 0.916 16 C -0.180 4.180 17 N -0.471 5.471 18 Si 0.798 3.202 19 H -0.185 1.185 20 H -0.191 1.191 21 H -0.194 1.194 22 C -0.160 4.160 23 C -0.197 4.197 24 C -0.081 4.081 25 C -0.144 4.144 26 C -0.155 4.155 27 C -0.158 4.158 28 C -0.134 4.134 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.108 0.892 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.125 0.875 36 H 0.231 0.769 37 H 0.128 0.872 38 H 0.113 0.887 39 H 0.092 0.908 40 H 0.117 0.883 41 H 0.122 0.878 42 H 0.067 0.933 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.085 0.915 46 H 0.101 0.899 47 H 0.077 0.923 48 H 0.105 0.895 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.815 -14.505 16.387 22.065 hybrid contribution -0.220 0.505 -0.990 1.133 sum 2.595 -14.000 15.398 20.972 Atomic orbital electron populations 1.21748 0.93391 1.03154 1.02344 1.22640 0.95894 0.83126 1.00539 1.87840 1.20144 1.27494 1.94399 1.22950 0.81458 0.97373 0.95085 0.89049 1.24171 1.01809 0.98385 0.98058 1.21629 0.86633 0.92643 0.95315 0.91198 1.43545 1.08792 1.41651 1.41318 1.17466 0.93307 0.93539 0.93612 1.20043 0.95545 1.01298 1.02329 1.20725 0.96949 1.01680 1.02048 1.17797 0.91499 0.93980 0.93629 1.19600 1.12227 1.13565 1.08400 0.91562 1.26601 0.93795 0.99661 0.97912 1.69929 1.19952 1.29883 1.27366 0.85250 0.79033 0.78245 0.77645 1.18487 1.19076 1.19352 1.20857 0.97500 0.99453 0.98157 1.20253 0.96673 1.02382 1.00439 1.22548 0.97258 0.94690 0.93650 1.22026 0.98728 0.99523 0.94093 1.22497 0.95036 1.01732 0.96276 1.22398 0.96697 1.00916 0.95821 1.21873 0.92920 1.02455 0.96105 0.91991 0.93426 0.89196 0.93631 0.91785 0.93166 0.87542 0.76856 0.87188 0.88706 0.90827 0.88293 0.87763 0.93254 0.91339 0.90795 0.91512 0.89863 0.92283 0.89503 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 10.28 71.98 0.74 -1.78 16 2 C 0.05 0.99 6.51 71.98 0.47 1.46 16 3 O -0.38 -9.12 7.74 -148.98 -1.15 -10.27 16 4 C 0.09 1.95 3.83 30.91 0.12 2.06 16 5 H 0.09 1.54 7.62 -2.39 -0.02 1.52 16 6 C -0.18 -4.88 7.55 31.21 0.24 -4.65 16 7 C 0.15 4.37 3.50 45.31 0.16 4.52 16 8 H 0.07 2.29 5.96 -2.39 -0.01 2.28 16 9 N -0.72 -25.91 4.79 -317.04 -1.52 -27.43 16 10 C 0.12 5.42 6.67 38.67 0.26 5.68 16 11 C -0.17 -7.95 9.82 22.15 0.22 -7.73 16 12 C -0.19 -10.18 9.74 22.48 0.22 -9.96 16 13 C 0.03 1.95 5.57 -21.27 -0.12 1.83 16 14 C -0.51 -29.35 9.03 23.38 0.21 -29.14 16 15 H 0.07 3.74 7.91 -2.91 -0.02 3.72 16 16 C 0.03 1.72 5.13 85.23 0.44 2.16 16 17 N -0.84 -47.13 10.96 21.82 0.24 -46.89 16 18 Si 0.98 41.11 29.60 68.60 2.03 43.14 16 19 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 20 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 21 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 22 C -0.14 -7.79 8.64 22.47 0.19 -7.60 16 23 C -0.18 -8.58 9.18 22.15 0.20 -8.37 16 24 C -0.08 -1.80 1.04 -51.92 -0.05 -1.85 16 25 C -0.11 -2.43 5.00 31.49 0.16 -2.27 16 26 C -0.12 -2.04 6.91 31.97 0.22 -1.82 16 27 C -0.12 -1.94 6.84 31.76 0.22 -1.72 16 28 C -0.10 -1.68 6.15 31.15 0.19 -1.49 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.11 2.35 8.14 -2.38 -0.02 2.33 16 36 H 0.40 13.64 7.02 -92.71 -0.65 12.99 16 37 H 0.11 4.52 8.06 -2.91 -0.02 4.49 16 38 H 0.09 4.73 8.06 -2.91 -0.02 4.71 16 39 H 0.28 14.27 8.30 -92.71 -0.77 13.50 16 40 H 0.10 5.79 6.16 -2.91 -0.02 5.77 16 41 H 0.10 4.64 6.07 -2.91 -0.02 4.63 16 42 H 0.05 1.35 7.97 -2.39 -0.02 1.33 16 43 H 0.07 1.66 6.81 -2.39 -0.02 1.64 16 44 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.09 1.18 7.74 -2.38 -0.02 1.16 16 49 H 0.07 1.27 7.74 -2.39 -0.02 1.25 16 Total: -1.00 -64.37 380.77 3.95 -60.42 By element: Atomic # 1 Polarization: 41.41 SS G_CDS: 0.28 Total: 41.68 kcal Atomic # 6 Polarization: -64.73 SS G_CDS: 4.08 Total: -60.66 kcal Atomic # 7 Polarization: -73.04 SS G_CDS: -1.28 Total: -74.32 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -1.15 Total: -10.27 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Total: -64.37 3.95 -60.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085679619.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.486 kcal (2) G-P(sol) polarization free energy of solvation -64.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds