Wall clock time and date at job start Tue Mar 31 2020 11:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46505 * 109.46804 * 2 1 4 4 C 1.46499 * 119.99687 * 278.36504 * 3 2 1 5 5 C 1.50704 * 109.47404 * 270.00716 * 4 3 2 6 6 H 1.08000 * 119.99776 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99991 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00195 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99945 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47247 * 59.99863 * 9 7 5 11 11 H 1.48501 * 109.47059 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47142 * 299.99555 * 9 7 5 13 13 C 1.34772 * 120.00013 * 98.37531 * 3 2 1 14 14 O 1.21558 * 119.99640 * 186.39767 * 13 3 2 15 15 C 1.47844 * 120.00487 * 6.39708 * 13 3 2 16 16 C 1.39579 * 120.14190 * 330.43809 * 15 13 3 17 17 C 1.37955 * 119.85504 * 180.24890 * 16 15 13 18 18 C 1.38365 * 120.14258 * 359.48010 * 17 16 15 19 19 C 1.50697 * 119.85274 * 180.27019 * 18 17 16 20 20 C 1.52995 * 109.47356 * 239.99872 * 19 18 17 21 21 C 1.52997 * 109.47578 * 180.02562 * 20 19 18 22 22 C 1.53001 * 109.46706 * 60.00210 * 21 20 19 23 23 C 1.53005 * 109.47207 * 299.99917 * 22 21 20 24 24 C 1.53001 * 109.46724 * 120.00207 * 19 18 17 25 25 C 1.38362 * 120.29170 * 0.29785 * 18 17 16 26 26 C 1.37962 * 120.14481 * 359.95037 * 25 18 17 27 27 H 1.08999 * 109.46987 * 60.00277 * 1 2 3 28 28 H 1.08994 * 109.47187 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47064 * 300.00307 * 1 2 3 30 30 H 1.08993 * 109.47535 * 239.99841 * 2 1 3 31 31 H 1.08999 * 109.46987 * 119.99723 * 2 1 3 32 32 H 1.08999 * 109.47008 * 30.00953 * 4 3 2 33 33 H 1.09005 * 109.47040 * 150.00381 * 4 3 2 34 34 H 0.96997 * 120.00634 * 180.02562 * 8 7 5 35 35 H 1.08010 * 120.07554 * 0.02562 * 16 15 13 36 36 H 1.08001 * 119.93103 * 179.75218 * 17 16 15 37 37 H 1.08994 * 109.47193 * 0.02562 * 19 18 17 38 38 H 1.09007 * 109.47376 * 300.00368 * 20 19 18 39 39 H 1.09009 * 109.46813 * 60.00252 * 20 19 18 40 40 H 1.08994 * 109.46988 * 300.00809 * 21 20 19 41 41 H 1.08998 * 109.47254 * 180.02562 * 21 20 19 42 42 H 1.09010 * 109.47274 * 180.02562 * 22 21 20 43 43 H 1.08998 * 109.47374 * 60.00407 * 22 21 20 44 44 H 1.08997 * 109.46976 * 300.00119 * 23 22 21 45 45 H 1.08999 * 109.46990 * 180.02562 * 23 22 21 46 46 H 1.08998 * 109.47290 * 299.99748 * 24 19 18 47 47 H 1.08998 * 109.47374 * 60.00145 * 24 19 18 48 48 H 1.07997 * 119.93015 * 179.97438 * 25 18 17 49 49 H 1.08002 * 120.07292 * 180.02562 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.0884 2.1334 -1.2553 5 6 3.4377 1.9226 -1.8925 6 1 4.1700 1.2919 -1.4105 7 6 3.7377 2.5359 -3.0904 8 7 2.8461 3.3043 -3.6772 9 14 5.4104 2.2753 -3.8800 10 1 5.6069 0.8298 -4.1578 11 1 5.4813 3.0375 -5.1524 12 1 6.4726 2.7509 -2.9577 13 6 2.4032 1.9600 1.1547 14 8 2.6974 3.1392 1.1750 15 6 2.4675 1.1606 2.3968 16 6 1.6115 0.0727 2.5752 17 6 1.6731 -0.6660 3.7387 18 6 2.5882 -0.3370 4.7230 19 6 2.6539 -1.1521 5.9888 20 6 2.3662 -0.2509 7.1912 21 6 2.4336 -1.0783 8.4764 22 6 3.8300 -1.6873 8.6181 23 6 4.1178 -2.5886 7.4157 24 6 4.0501 -1.7616 6.1308 25 6 3.4427 0.7375 4.5504 26 6 3.3879 1.4875 3.3938 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.3085 1.7843 -1.9320 33 1 1.9445 3.1945 -1.0516 34 1 3.0570 3.7355 -4.5201 35 1 0.9000 -0.1882 1.8056 36 1 1.0086 -1.5057 3.8797 37 1 1.9123 -1.9496 5.9463 38 1 3.1083 0.5465 7.2336 39 1 1.3715 0.1834 7.0900 40 1 1.6920 -1.8759 8.4343 41 1 2.2282 -0.4363 9.3330 42 1 3.8780 -2.2772 9.5336 43 1 4.5717 -0.8898 8.6602 44 1 3.3761 -3.3862 7.3737 45 1 5.1124 -3.0228 7.5169 46 1 4.2551 -2.4036 5.2742 47 1 4.7921 -0.9643 6.1731 48 1 4.1544 0.9893 5.3227 49 1 4.0558 2.3257 3.2601 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103208501.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:27 Heat of formation + Delta-G solvation = -14.262117 kcal Electronic energy + Delta-G solvation = -26334.603720 eV Core-core repulsion = 22840.210121 eV Total energy + Delta-G solvation = -3494.393599 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.33515 -39.09151 -37.34649 -35.57279 -33.18777 -32.46554 -31.03442 -31.01017 -30.06183 -29.16994 -26.99541 -24.20391 -23.30790 -22.81293 -22.70661 -22.28130 -21.03359 -19.76398 -18.99976 -16.79447 -16.48492 -16.37295 -15.67104 -15.37396 -14.74442 -14.72766 -14.45610 -14.39406 -14.22206 -13.91128 -13.68347 -13.30290 -13.15307 -12.82360 -12.60546 -12.45968 -12.39897 -12.07591 -11.89704 -11.80895 -11.53642 -11.40556 -11.35906 -11.18813 -10.95940 -10.91089 -10.67486 -10.59576 -10.51907 -10.36950 -10.22688 -10.09867 -9.64903 -8.99222 -8.76971 -8.48268 -8.41682 -7.65037 -6.03565 -4.08578 1.14710 1.49181 3.32446 3.35517 3.36829 3.41325 3.87142 4.14855 4.33699 4.44296 4.45479 4.54950 4.80358 4.90873 5.01350 5.01850 5.05818 5.10943 5.24853 5.24955 5.27444 5.30243 5.30852 5.38943 5.51799 5.54138 5.58135 5.62785 5.74554 5.75447 5.84973 5.86677 5.87813 5.94002 5.97625 6.04690 6.08041 6.11998 6.17985 6.24253 6.42302 6.52144 6.59260 6.64138 7.00962 7.12062 7.46459 7.55067 7.93033 8.24101 8.41826 8.89776 9.08350 9.56422 11.04440 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.021653 B = 0.002791 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.823675 B =10030.512385 C =10464.964944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.074 3.926 3 N -0.588 5.588 4 C 0.245 3.755 5 C -0.528 4.528 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.546 3.454 14 O -0.540 6.540 15 C -0.120 4.120 16 C -0.119 4.119 17 C -0.129 4.129 18 C -0.066 4.066 19 C -0.046 4.046 20 C -0.112 4.112 21 C -0.119 4.119 22 C -0.121 4.121 23 C -0.119 4.119 24 C -0.112 4.112 25 C -0.124 4.124 26 C -0.065 4.065 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.034 0.966 33 H 0.046 0.954 34 H 0.264 0.736 35 H 0.160 0.840 36 H 0.122 0.878 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.064 0.936 47 H 0.065 0.935 48 H 0.122 0.878 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.723 -13.634 22.077 26.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.049 4.049 3 N -0.318 5.318 4 C 0.126 3.874 5 C -0.567 4.567 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.333 3.667 14 O -0.419 6.419 15 C -0.123 4.123 16 C -0.137 4.137 17 C -0.147 4.147 18 C -0.067 4.067 19 C -0.064 4.064 20 C -0.149 4.149 21 C -0.157 4.157 22 C -0.158 4.158 23 C -0.157 4.157 24 C -0.149 4.149 25 C -0.142 4.142 26 C -0.084 4.084 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.113 0.887 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.177 0.823 36 H 0.140 0.860 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.084 0.916 48 H 0.140 0.860 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.605 -12.879 21.863 25.508 hybrid contribution 0.932 -0.131 -0.662 1.150 sum -1.674 -13.009 21.202 24.931 Atomic orbital electron populations 1.22289 0.96648 1.01762 1.02805 1.22251 0.93661 0.84938 1.04074 1.48122 1.61703 1.13218 1.08762 1.19302 0.97046 0.92743 0.78277 1.21406 0.99804 1.29765 1.05731 0.92501 1.24931 0.97290 0.94886 0.96947 1.69922 1.34425 1.31077 1.17908 0.86554 0.84223 0.78153 0.78474 1.20238 1.21152 1.20162 1.18222 0.78318 0.87002 0.83182 1.90737 1.49669 1.15711 1.85737 1.20258 0.98794 0.97182 0.96073 1.22462 0.99559 0.93855 0.97828 1.20987 0.99420 1.00735 0.93567 1.19966 0.95571 0.95710 0.95430 1.20176 0.97991 0.96669 0.91612 1.21609 1.02085 0.97866 0.93354 1.21540 0.97159 0.99433 0.97546 1.21553 0.97234 0.99177 0.97859 1.21534 1.01474 0.98048 0.94630 1.21602 0.96231 0.99560 0.97550 1.20872 0.99894 0.95869 0.97594 1.21239 0.96805 0.98370 0.91969 0.91325 0.91780 0.92427 0.90307 0.88726 0.94849 0.93638 0.92646 0.82277 0.85978 0.90499 0.91632 0.91770 0.92044 0.92042 0.92260 0.91988 0.92040 0.92022 0.91722 0.91635 0.85991 0.85170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.43 9.13 37.16 0.34 -2.09 16 2 C 0.07 1.24 5.58 -4.04 -0.02 1.22 16 3 N -0.59 -12.94 2.46 -176.17 -0.43 -13.37 16 4 C 0.25 6.54 5.22 -5.19 -0.03 6.52 16 5 C -0.53 -15.21 9.39 -34.44 -0.32 -15.54 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 9 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.55 12.21 7.46 -12.33 -0.09 12.12 16 14 O -0.54 -14.33 16.26 5.31 0.09 -14.24 16 15 C -0.12 -2.10 5.59 -104.97 -0.59 -2.69 16 16 C -0.12 -1.68 7.49 -39.19 -0.29 -1.97 16 17 C -0.13 -1.50 9.65 -39.64 -0.38 -1.88 16 18 C -0.07 -0.74 4.79 -104.53 -0.50 -1.25 16 19 C -0.05 -0.40 2.36 -91.78 -0.22 -0.61 16 20 C -0.11 -0.89 5.01 -26.74 -0.13 -1.03 16 21 C -0.12 -0.80 5.92 -26.73 -0.16 -0.96 16 22 C -0.12 -0.78 5.92 -26.73 -0.16 -0.94 16 23 C -0.12 -0.81 5.92 -26.75 -0.16 -0.97 16 24 C -0.11 -0.91 5.01 -26.76 -0.13 -1.04 16 25 C -0.12 -1.56 8.69 -39.64 -0.34 -1.90 16 26 C -0.06 -1.03 9.60 -39.19 -0.38 -1.41 16 27 H 0.07 1.05 7.93 -51.93 -0.41 0.64 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.77 7.07 -51.93 -0.37 0.40 16 30 H 0.08 1.36 8.13 -51.93 -0.42 0.94 16 31 H 0.10 1.39 4.02 -52.09 -0.21 1.18 16 32 H 0.03 0.89 7.86 -51.93 -0.41 0.48 16 33 H 0.05 1.37 7.34 -51.93 -0.38 0.99 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.16 2.06 2.53 -52.48 -0.13 1.93 16 36 H 0.12 1.10 7.94 -52.49 -0.42 0.68 16 37 H 0.08 0.62 7.87 -51.93 -0.41 0.21 16 38 H 0.06 0.55 7.37 -51.92 -0.38 0.16 16 39 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.06 0.55 7.38 -51.93 -0.38 0.17 16 48 H 0.12 1.27 7.08 -52.49 -0.37 0.90 16 49 H 0.13 2.14 7.92 -52.49 -0.42 1.73 16 LS Contribution 380.91 15.07 5.74 5.74 Total: -1.00 -33.05 380.91 -10.62 -43.67 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -8.06 Total: -0.03 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: -3.67 Total: -12.74 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.30 Total: -39.45 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: 0.09 Total: -14.24 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.05 -10.62 -43.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103208501.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.410 kcal (2) G-P(sol) polarization free energy of solvation -33.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds