Wall clock time and date at job start Tue Mar 31 2020 11:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46505 * 109.46804 * 2 1 4 4 C 1.46499 * 119.99687 * 278.36504 * 3 2 1 5 5 C 1.50704 * 109.47404 * 270.00716 * 4 3 2 6 6 H 1.08000 * 119.99776 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99991 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00195 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99945 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47247 * 59.99863 * 9 7 5 11 11 H 1.48501 * 109.47059 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47142 * 299.99555 * 9 7 5 13 13 C 1.34772 * 120.00013 * 98.37531 * 3 2 1 14 14 O 1.21558 * 119.99640 * 186.39767 * 13 3 2 15 15 C 1.47844 * 120.00487 * 6.39708 * 13 3 2 16 16 C 1.39579 * 120.14190 * 330.43809 * 15 13 3 17 17 C 1.37955 * 119.85504 * 180.24890 * 16 15 13 18 18 C 1.38365 * 120.14258 * 359.48010 * 17 16 15 19 19 C 1.50697 * 119.85274 * 180.27019 * 18 17 16 20 20 C 1.52995 * 109.47356 * 239.99872 * 19 18 17 21 21 C 1.52997 * 109.47578 * 180.02562 * 20 19 18 22 22 C 1.53001 * 109.46706 * 60.00210 * 21 20 19 23 23 C 1.53005 * 109.47207 * 299.99917 * 22 21 20 24 24 C 1.53001 * 109.46724 * 120.00207 * 19 18 17 25 25 C 1.38362 * 120.29170 * 0.29785 * 18 17 16 26 26 C 1.37962 * 120.14481 * 359.95037 * 25 18 17 27 27 H 1.08999 * 109.46987 * 60.00277 * 1 2 3 28 28 H 1.08994 * 109.47187 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47064 * 300.00307 * 1 2 3 30 30 H 1.08993 * 109.47535 * 239.99841 * 2 1 3 31 31 H 1.08999 * 109.46987 * 119.99723 * 2 1 3 32 32 H 1.08999 * 109.47008 * 30.00953 * 4 3 2 33 33 H 1.09005 * 109.47040 * 150.00381 * 4 3 2 34 34 H 0.96997 * 120.00634 * 180.02562 * 8 7 5 35 35 H 1.08010 * 120.07554 * 0.02562 * 16 15 13 36 36 H 1.08001 * 119.93103 * 179.75218 * 17 16 15 37 37 H 1.08994 * 109.47193 * 0.02562 * 19 18 17 38 38 H 1.09007 * 109.47376 * 300.00368 * 20 19 18 39 39 H 1.09009 * 109.46813 * 60.00252 * 20 19 18 40 40 H 1.08994 * 109.46988 * 300.00809 * 21 20 19 41 41 H 1.08998 * 109.47254 * 180.02562 * 21 20 19 42 42 H 1.09010 * 109.47274 * 180.02562 * 22 21 20 43 43 H 1.08998 * 109.47374 * 60.00407 * 22 21 20 44 44 H 1.08997 * 109.46976 * 300.00119 * 23 22 21 45 45 H 1.08999 * 109.46990 * 180.02562 * 23 22 21 46 46 H 1.08998 * 109.47290 * 299.99748 * 24 19 18 47 47 H 1.08998 * 109.47374 * 60.00145 * 24 19 18 48 48 H 1.07997 * 119.93015 * 179.97438 * 25 18 17 49 49 H 1.08002 * 120.07292 * 180.02562 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.0884 2.1334 -1.2553 5 6 3.4377 1.9226 -1.8925 6 1 4.1700 1.2919 -1.4105 7 6 3.7377 2.5359 -3.0904 8 7 2.8461 3.3043 -3.6772 9 14 5.4104 2.2753 -3.8800 10 1 5.6069 0.8298 -4.1578 11 1 5.4813 3.0375 -5.1524 12 1 6.4726 2.7509 -2.9577 13 6 2.4032 1.9600 1.1547 14 8 2.6974 3.1392 1.1750 15 6 2.4675 1.1606 2.3968 16 6 1.6115 0.0727 2.5752 17 6 1.6731 -0.6660 3.7387 18 6 2.5882 -0.3370 4.7230 19 6 2.6539 -1.1521 5.9888 20 6 2.3662 -0.2509 7.1912 21 6 2.4336 -1.0783 8.4764 22 6 3.8300 -1.6873 8.6181 23 6 4.1178 -2.5886 7.4157 24 6 4.0501 -1.7616 6.1308 25 6 3.4427 0.7375 4.5504 26 6 3.3879 1.4875 3.3938 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.3085 1.7843 -1.9320 33 1 1.9445 3.1945 -1.0516 34 1 3.0570 3.7355 -4.5201 35 1 0.9000 -0.1882 1.8056 36 1 1.0086 -1.5057 3.8797 37 1 1.9123 -1.9496 5.9463 38 1 3.1083 0.5465 7.2336 39 1 1.3715 0.1834 7.0900 40 1 1.6920 -1.8759 8.4343 41 1 2.2282 -0.4363 9.3330 42 1 3.8780 -2.2772 9.5336 43 1 4.5717 -0.8898 8.6602 44 1 3.3761 -3.3862 7.3737 45 1 5.1124 -3.0228 7.5169 46 1 4.2551 -2.4036 5.2742 47 1 4.7921 -0.9643 6.1731 48 1 4.1544 0.9893 5.3227 49 1 4.0558 2.3257 3.2601 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103208501.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:23 Heat of formation + Delta-G solvation = -31.495396 kcal Electronic energy + Delta-G solvation = -26335.351011 eV Core-core repulsion = 22840.210121 eV Total energy + Delta-G solvation = -3495.140890 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 3.14 seconds Orbital eigenvalues (eV) -41.61117 -40.19996 -38.39575 -37.27186 -35.09169 -33.63992 -32.38800 -31.56090 -31.37629 -30.30261 -28.81978 -25.63268 -24.81221 -23.95356 -23.50251 -23.36512 -21.98971 -20.54817 -20.39216 -18.68448 -18.19327 -17.64080 -17.08996 -16.47691 -16.23569 -16.13219 -15.58190 -15.44238 -15.01668 -14.99641 -14.82695 -14.50929 -14.42021 -13.94973 -13.91301 -13.64177 -13.48092 -13.32425 -13.12831 -13.02658 -12.94593 -12.75230 -12.60424 -12.47565 -12.20950 -12.18305 -11.95111 -11.87677 -11.77705 -11.64191 -11.25477 -11.00692 -10.97261 -10.67734 -10.65211 -9.87356 -9.65509 -9.45338 -8.25927 -6.41691 -0.04012 0.41931 1.33842 1.38550 1.46084 1.87031 2.24729 2.40022 2.83760 3.03108 3.54210 3.67538 3.79486 3.94675 3.98581 4.01955 4.12824 4.27909 4.30048 4.35143 4.45011 4.45735 4.54848 4.58937 4.65807 4.69900 4.70750 4.77399 4.83358 4.88146 4.91517 4.99553 5.03398 5.10506 5.15973 5.23726 5.24428 5.30219 5.32710 5.35391 5.38390 5.43569 5.49093 5.51209 5.52995 5.57076 5.72932 5.79713 5.98346 6.01699 6.64122 6.70443 7.21434 7.37628 8.81252 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.021653 B = 0.002791 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.823675 B =10030.512385 C =10464.964944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.067 3.933 3 N -0.593 5.593 4 C 0.261 3.739 5 C -0.548 4.548 6 H 0.051 0.949 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.970 3.030 10 H -0.259 1.259 11 H -0.275 1.275 12 H -0.278 1.278 13 C 0.535 3.465 14 O -0.602 6.602 15 C -0.149 4.149 16 C -0.116 4.116 17 C -0.118 4.118 18 C -0.052 4.052 19 C -0.042 4.042 20 C -0.112 4.112 21 C -0.116 4.116 22 C -0.121 4.121 23 C -0.116 4.116 24 C -0.112 4.112 25 C -0.118 4.118 26 C -0.083 4.083 27 H 0.046 0.954 28 H 0.109 0.891 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.123 0.877 32 H 0.027 0.973 33 H -0.003 1.003 34 H 0.269 0.731 35 H 0.172 0.828 36 H 0.163 0.837 37 H 0.095 0.905 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.056 0.944 44 H 0.069 0.931 45 H 0.064 0.936 46 H 0.061 0.939 47 H 0.058 0.942 48 H 0.142 0.858 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.825 -17.287 24.180 29.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.054 4.054 3 N -0.322 5.322 4 C 0.140 3.860 5 C -0.587 4.587 6 H 0.069 0.931 7 C -0.191 4.191 8 N -0.566 5.566 9 Si 0.793 3.207 10 H -0.183 1.183 11 H -0.200 1.200 12 H -0.204 1.204 13 C 0.326 3.674 14 O -0.485 6.485 15 C -0.152 4.152 16 C -0.133 4.133 17 C -0.136 4.136 18 C -0.052 4.052 19 C -0.060 4.060 20 C -0.150 4.150 21 C -0.153 4.153 22 C -0.159 4.159 23 C -0.154 4.154 24 C -0.150 4.150 25 C -0.136 4.136 26 C -0.102 4.102 27 H 0.065 0.935 28 H 0.127 0.873 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.140 0.860 32 H 0.045 0.955 33 H 0.015 0.985 34 H 0.078 0.922 35 H 0.188 0.812 36 H 0.181 0.819 37 H 0.113 0.887 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.088 0.912 45 H 0.083 0.917 46 H 0.080 0.920 47 H 0.077 0.923 48 H 0.160 0.840 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.731 -16.588 23.978 29.284 hybrid contribution 0.934 0.978 -1.196 1.805 sum -1.797 -15.609 22.782 27.675 Atomic orbital electron populations 1.22240 0.94012 1.04413 1.02034 1.22648 0.95795 0.81906 1.05078 1.48146 1.61818 1.15027 1.07220 1.18760 0.96274 0.90757 0.80231 1.21655 1.00499 1.30167 1.06347 0.93064 1.25885 1.01506 0.94262 0.97416 1.70045 1.36556 1.31651 1.18363 0.85440 0.78664 0.79078 0.77472 1.18325 1.20010 1.20365 1.19094 0.76845 0.86800 0.84689 1.90677 1.52381 1.18502 1.86912 1.19928 1.01923 0.98987 0.94391 1.22533 0.98752 0.92734 0.99319 1.21408 0.99321 1.00828 0.92010 1.20375 0.93904 0.94619 0.96323 1.20238 0.98917 0.96709 0.90124 1.21608 1.01711 0.97826 0.93823 1.21517 0.97480 0.99504 0.96846 1.21562 0.96969 0.99132 0.98200 1.21512 1.02014 0.97998 0.93845 1.21600 0.95593 0.99508 0.98285 1.21046 1.00421 0.95611 0.96480 1.21208 0.96951 0.98841 0.93250 0.93512 0.87278 0.91841 0.91046 0.85969 0.95461 0.98509 0.92249 0.81151 0.81930 0.88678 0.92290 0.92042 0.91255 0.91651 0.91346 0.92476 0.91249 0.91681 0.92002 0.92305 0.84016 0.87349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.42 9.13 71.98 0.66 -3.76 16 2 C 0.07 2.22 5.58 86.38 0.48 2.70 16 3 N -0.59 -27.47 2.46 -829.55 -2.04 -29.51 16 4 C 0.26 14.87 5.22 85.63 0.45 15.32 16 5 C -0.55 -32.99 9.39 25.60 0.24 -32.74 16 6 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 7 C 0.01 0.51 5.46 84.65 0.46 0.97 16 8 N -0.93 -57.43 13.29 21.45 0.28 -57.14 16 9 Si 0.97 46.00 29.54 68.60 2.03 48.02 16 10 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 13 C 0.54 25.51 7.46 86.79 0.65 26.16 16 14 O -0.60 -34.79 16.26 -3.90 -0.06 -34.85 16 15 C -0.15 -5.35 5.59 -20.09 -0.11 -5.46 16 16 C -0.12 -3.02 7.49 22.53 0.17 -2.85 16 17 C -0.12 -2.27 9.65 22.23 0.21 -2.06 16 18 C -0.05 -1.00 4.79 -19.81 -0.09 -1.09 16 19 C -0.04 -0.55 2.36 -11.54 -0.03 -0.58 16 20 C -0.11 -1.44 5.01 30.59 0.15 -1.29 16 21 C -0.12 -1.16 5.92 30.59 0.18 -0.98 16 22 C -0.12 -1.19 5.92 30.60 0.18 -1.01 16 23 C -0.12 -1.18 5.92 30.58 0.18 -1.00 16 24 C -0.11 -1.45 5.01 30.58 0.15 -1.30 16 25 C -0.12 -2.79 8.69 22.23 0.19 -2.60 16 26 C -0.08 -2.73 9.60 22.53 0.22 -2.51 16 27 H 0.05 1.43 7.93 -2.39 -0.02 1.41 16 28 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.06 1.59 7.07 -2.39 -0.02 1.57 16 30 H 0.07 2.46 8.13 -2.39 -0.02 2.44 16 31 H 0.12 3.39 4.02 -2.54 -0.01 3.38 16 32 H 0.03 1.56 7.86 -2.39 -0.02 1.54 16 33 H 0.00 -0.21 7.34 -2.38 -0.02 -0.23 16 34 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 35 H 0.17 3.97 2.53 -2.91 -0.01 3.97 16 36 H 0.16 1.91 7.94 -2.91 -0.02 1.89 16 37 H 0.09 1.01 7.87 -2.39 -0.02 0.99 16 38 H 0.06 0.84 7.37 -2.38 -0.02 0.82 16 39 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 40 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 43 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.06 0.84 7.38 -2.39 -0.02 0.83 16 48 H 0.14 2.74 7.08 -2.91 -0.02 2.72 16 49 H 0.11 3.91 7.92 -2.91 -0.02 3.89 16 Total: -1.00 -78.00 380.91 5.47 -72.52 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 0.92 Total: 15.05 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: 4.34 Total: -14.09 kcal Atomic # 7 Polarization: -84.89 SS G_CDS: -1.76 Total: -86.65 kcal Atomic # 8 Polarization: -34.79 SS G_CDS: -0.06 Total: -34.85 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.02 kcal Total: -78.00 5.47 -72.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103208501.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.029 kcal (2) G-P(sol) polarization free energy of solvation -77.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.14 seconds