Wall clock time and date at job start Tue Mar 31 2020 11:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46495 * 120.00100 * 2 1 4 4 C 1.50703 * 109.47282 * 270.00076 * 3 2 1 5 5 H 1.07988 * 119.99946 * 0.02562 * 4 3 2 6 6 C 1.37872 * 119.99697 * 179.97438 * 4 3 2 7 7 N 1.31518 * 120.00551 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99985 * 180.02562 * 6 4 3 9 9 H 1.48510 * 109.47070 * 89.99942 * 8 6 4 10 10 H 1.48498 * 109.47614 * 210.00100 * 8 6 4 11 11 H 1.48500 * 109.47223 * 330.00423 * 8 6 4 12 12 C 1.34777 * 119.99718 * 180.02562 * 2 1 3 13 13 O 1.21286 * 120.00036 * 179.97438 * 12 2 1 14 14 C 1.50696 * 120.00226 * 359.97438 * 12 2 1 15 15 C 1.53003 * 109.47401 * 180.02562 * 14 12 2 16 16 C 1.53000 * 109.47499 * 185.00028 * 15 14 12 17 17 C 1.53000 * 109.46927 * 299.99949 * 16 15 14 18 18 C 1.53003 * 109.47033 * 300.00183 * 17 16 15 19 19 C 1.50703 * 109.47061 * 180.02562 * 18 17 16 20 20 C 1.38234 * 120.00257 * 119.99964 * 19 18 17 21 21 C 1.38238 * 119.99675 * 180.27927 * 20 19 18 22 22 C 1.38228 * 120.00120 * 359.47825 * 21 20 19 23 23 C 1.38234 * 120.00000 * 0.52176 * 22 21 20 24 24 C 1.38234 * 119.99503 * 300.01565 * 19 18 17 25 25 C 1.52998 * 109.47547 * 59.99757 * 18 17 16 26 26 C 1.52997 * 109.47338 * 64.99729 * 15 14 12 27 27 H 1.09004 * 109.47089 * 269.99516 * 1 2 3 28 28 H 1.08998 * 109.46964 * 29.99295 * 1 2 3 29 29 H 1.08996 * 109.47178 * 149.99687 * 1 2 3 30 30 H 1.09000 * 109.47111 * 30.00860 * 3 2 1 31 31 H 1.09000 * 109.46942 * 149.99963 * 3 2 1 32 32 H 0.97000 * 120.00712 * 180.02562 * 7 6 4 33 33 H 1.08999 * 109.47572 * 60.00143 * 14 12 2 34 34 H 1.08996 * 109.47061 * 299.99728 * 14 12 2 35 35 H 1.09007 * 109.46763 * 304.99768 * 15 14 12 36 36 H 1.08995 * 109.47095 * 179.97438 * 16 15 14 37 37 H 1.09000 * 109.47156 * 59.99659 * 16 15 14 38 38 H 1.08994 * 109.46964 * 180.02562 * 17 16 15 39 39 H 1.09005 * 109.47336 * 59.99524 * 17 16 15 40 40 H 1.09005 * 109.46522 * 299.99840 * 18 17 16 41 41 H 1.08002 * 119.99744 * 359.97438 * 20 19 18 42 42 H 1.08004 * 119.99577 * 179.72816 * 21 20 19 43 43 H 1.07999 * 119.99932 * 180.24104 * 22 21 20 44 44 H 1.08001 * 120.00310 * 179.72161 * 23 22 21 45 45 H 1.07997 * 120.00460 * 0.02562 * 24 19 18 46 46 H 1.09005 * 109.46689 * 60.00179 * 25 18 17 47 47 H 1.08992 * 109.46988 * 180.02562 * 25 18 17 48 48 H 1.08995 * 109.47490 * 180.02562 * 26 15 14 49 49 H 1.09002 * 109.47253 * 300.00596 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0975 1.0963 -2.2416 6 6 3.1260 2.8779 -1.6726 7 7 3.5534 3.6181 -0.6730 8 14 3.4368 3.4177 -3.4338 9 1 2.3063 4.2604 -3.9000 10 1 4.6968 4.2009 -3.4965 11 1 3.5540 2.2208 -4.3049 12 6 2.1388 -1.1672 -0.0005 13 8 3.3517 -1.1673 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 6 2.3795 -3.6353 -0.0005 16 6 1.6187 -4.9567 -0.1262 17 6 0.6584 -5.1067 1.0554 18 6 1.4533 -5.0981 2.3627 19 6 0.5075 -5.2465 3.5266 20 6 0.6336 -6.3210 4.3871 21 6 -0.2377 -6.4601 5.4513 22 6 -1.2281 -5.5190 5.6613 23 6 -1.3542 -4.4445 4.8008 24 6 -0.4863 -4.3082 3.7334 25 6 2.2142 -3.7768 2.4885 26 6 3.1744 -3.6268 1.3068 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3633 0.8900 -0.5137 29 1 -0.3633 -0.8899 -0.5139 30 1 1.6085 2.0283 0.5140 31 1 3.1499 1.1383 0.5138 32 1 4.0296 4.4444 -0.8502 33 1 0.7583 -2.5299 -0.8903 34 1 0.7591 -2.5302 0.8897 35 1 3.0637 -3.5284 -0.8424 36 1 2.3270 -5.7852 -0.1267 37 1 1.0525 -4.9628 -1.0576 38 1 0.1168 -6.0483 0.9661 39 1 -0.0499 -4.2782 1.0555 40 1 2.1616 -5.9267 2.3627 41 1 1.4096 -7.0544 4.2251 42 1 -0.1419 -7.3020 6.1211 43 1 -1.9063 -5.6256 6.4950 44 1 -2.1308 -3.7116 4.9622 45 1 -0.5853 -3.4691 3.0608 46 1 1.5058 -2.9482 2.4885 47 1 2.7807 -3.7709 3.4196 48 1 3.8829 -4.4550 1.3066 49 1 3.7164 -2.6854 1.3964 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108261516.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:38 Heat of formation + Delta-G solvation = -38.049460 kcal Electronic energy + Delta-G solvation = -26684.771736 eV Core-core repulsion = 23189.346641 eV Total energy + Delta-G solvation = -3495.425095 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.33138 -39.13273 -37.66703 -34.77804 -33.28515 -32.56450 -31.05391 -30.69410 -29.86490 -28.14505 -26.79639 -25.49178 -23.48581 -22.83548 -22.52384 -22.37667 -20.66165 -19.07636 -17.75481 -17.06193 -16.51866 -16.38979 -15.67672 -15.42509 -15.19876 -15.03825 -14.48214 -14.18488 -13.97406 -13.85818 -13.51325 -13.28584 -13.21505 -12.75736 -12.52569 -12.36969 -12.19720 -12.13493 -11.95511 -11.70423 -11.67559 -11.39527 -11.21299 -11.10656 -11.04033 -10.86010 -10.82655 -10.53415 -10.13949 -10.08073 -10.00818 -9.93335 -9.58015 -9.06624 -8.81938 -8.68510 -8.41986 -7.57626 -6.02498 -4.07172 1.22251 1.25317 3.30605 3.37219 3.41180 3.53035 3.64144 4.04582 4.45304 4.48245 4.62018 4.83046 4.84011 4.85687 4.96099 5.09599 5.13935 5.27900 5.32276 5.35349 5.36523 5.40697 5.40842 5.56578 5.58093 5.65887 5.72947 5.78668 5.81938 5.87019 5.91033 5.96004 5.97766 6.02238 6.12697 6.16724 6.23251 6.32802 6.35174 6.37299 6.45658 6.57120 6.60558 6.74371 6.87072 7.10540 7.47931 7.59478 7.94378 8.26210 8.49246 8.93376 9.18103 9.58073 11.05501 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.022576 B = 0.002863 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.947036 B = 9778.627941 C =10309.886157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.605 5.605 3 C 0.245 3.755 4 C -0.524 4.524 5 H 0.056 0.944 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.504 3.496 13 O -0.540 6.540 14 C -0.138 4.138 15 C -0.070 4.070 16 C -0.114 4.114 17 C -0.110 4.110 18 C -0.048 4.048 19 C -0.070 4.070 20 C -0.120 4.120 21 C -0.121 4.121 22 C -0.130 4.130 23 C -0.118 4.118 24 C -0.114 4.114 25 C -0.111 4.111 26 C -0.120 4.120 27 H 0.042 0.958 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.030 0.970 31 H 0.043 0.957 32 H 0.263 0.737 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.122 0.878 46 H 0.064 0.936 47 H 0.059 0.941 48 H 0.056 0.944 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.549 -20.348 9.217 24.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.338 5.338 3 C 0.126 3.874 4 C -0.563 4.563 5 H 0.074 0.926 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.291 3.709 13 O -0.418 6.418 14 C -0.178 4.178 15 C -0.089 4.089 16 C -0.151 4.151 17 C -0.148 4.148 18 C -0.067 4.067 19 C -0.070 4.070 20 C -0.138 4.138 21 C -0.139 4.139 22 C -0.148 4.148 23 C -0.136 4.136 24 C -0.132 4.132 25 C -0.148 4.148 26 C -0.157 4.157 27 H 0.060 0.940 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.140 0.860 46 H 0.083 0.917 47 H 0.078 0.922 48 H 0.074 0.926 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.808 -20.146 9.260 24.245 hybrid contribution -0.031 0.478 -0.913 1.031 sum -9.839 -19.668 8.347 23.522 Atomic orbital electron populations 1.21614 0.81709 1.02470 1.00222 1.48177 1.06020 1.08000 1.71574 1.19254 0.92528 0.78274 0.97370 1.21436 1.36347 1.06172 0.92359 0.92557 1.24940 0.95410 0.96440 0.97382 1.69934 1.38524 1.14311 1.30699 0.86508 0.77666 0.78574 0.84736 1.20670 1.21086 1.19918 1.20397 0.88190 0.85137 0.77220 1.90617 1.13974 1.87162 1.50050 1.21871 0.99285 0.93468 1.03217 1.20851 0.96352 0.92453 0.99217 1.21599 0.98260 0.97553 0.97728 1.21620 0.97858 1.01756 0.93531 1.20239 0.95378 0.99158 0.91888 1.19990 0.96120 0.94507 0.96342 1.21080 0.99506 0.97969 0.95291 1.21115 0.95731 0.99129 0.97905 1.21113 0.98837 0.95183 0.99665 1.21166 0.99272 0.98023 0.95166 1.21056 0.95162 0.98984 0.97954 1.21643 0.98460 0.95967 0.98725 1.21676 0.97460 1.03509 0.93059 0.93955 0.90933 0.92493 0.95227 0.93892 0.92750 0.89875 0.89490 0.90398 0.91885 0.91939 0.92249 0.91520 0.90623 0.86308 0.86383 0.86425 0.86183 0.86045 0.91721 0.92224 0.92573 0.89235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.33 10.24 59.85 0.61 1.94 16 2 N -0.61 -12.85 2.86 -182.96 -0.52 -13.37 16 3 C 0.25 6.48 5.16 -5.20 -0.03 6.45 16 4 C -0.52 -15.02 9.39 -34.44 -0.32 -15.35 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 8 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 12 C 0.50 10.25 7.39 -10.99 -0.08 10.17 16 13 O -0.54 -13.20 13.55 5.55 0.08 -13.12 16 14 C -0.14 -1.99 3.02 -27.88 -0.08 -2.07 16 15 C -0.07 -0.94 2.31 -90.62 -0.21 -1.15 16 16 C -0.11 -1.17 5.45 -26.73 -0.15 -1.32 16 17 C -0.11 -1.05 4.74 -26.73 -0.13 -1.18 16 18 C -0.05 -0.48 2.36 -91.77 -0.22 -0.70 16 19 C -0.07 -0.71 4.78 -104.62 -0.50 -1.21 16 20 C -0.12 -1.14 9.67 -39.58 -0.38 -1.52 16 21 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 22 C -0.13 -1.14 10.05 -39.59 -0.40 -1.54 16 23 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 24 C -0.11 -1.15 8.71 -39.58 -0.34 -1.50 16 25 C -0.11 -1.32 4.74 -26.73 -0.13 -1.45 16 26 C -0.12 -1.65 5.19 -26.73 -0.14 -1.79 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 29 H 0.06 0.73 6.44 -51.93 -0.33 0.40 16 30 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 31 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.08 1.08 7.40 -51.93 -0.38 0.70 16 34 H 0.09 1.09 4.79 -51.93 -0.25 0.84 16 35 H 0.08 1.20 7.96 -51.93 -0.41 0.79 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.64 5.79 -51.93 -0.30 0.34 16 40 H 0.08 0.73 7.88 -51.93 -0.41 0.32 16 41 H 0.12 0.95 7.95 -52.49 -0.42 0.53 16 42 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 43 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 44 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 45 H 0.12 1.16 7.11 -52.49 -0.37 0.79 16 46 H 0.06 0.82 5.57 -51.93 -0.29 0.53 16 47 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 49 H 0.09 1.57 5.95 -51.93 -0.31 1.26 16 LS Contribution 378.85 15.07 5.71 5.71 Total: -1.00 -32.84 378.85 -10.46 -43.30 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -8.05 Total: 0.12 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: -3.39 Total: -13.52 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.21 Total: -39.52 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.08 Total: -13.12 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.84 -10.46 -43.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108261516.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.250 kcal (2) G-P(sol) polarization free energy of solvation -32.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds