Wall clock time and date at job start Tue Mar 31 2020 11:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46495 * 120.00100 * 2 1 4 4 C 1.50703 * 109.47282 * 270.00076 * 3 2 1 5 5 H 1.07988 * 119.99946 * 0.02562 * 4 3 2 6 6 C 1.37872 * 119.99697 * 179.97438 * 4 3 2 7 7 N 1.31518 * 120.00551 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99985 * 180.02562 * 6 4 3 9 9 H 1.48510 * 109.47070 * 89.99942 * 8 6 4 10 10 H 1.48498 * 109.47614 * 210.00100 * 8 6 4 11 11 H 1.48500 * 109.47223 * 330.00423 * 8 6 4 12 12 C 1.34777 * 119.99718 * 180.02562 * 2 1 3 13 13 O 1.21286 * 120.00036 * 179.97438 * 12 2 1 14 14 C 1.50696 * 120.00226 * 359.97438 * 12 2 1 15 15 C 1.53003 * 109.47401 * 180.02562 * 14 12 2 16 16 C 1.53000 * 109.47499 * 185.00028 * 15 14 12 17 17 C 1.53000 * 109.46927 * 299.99949 * 16 15 14 18 18 C 1.53003 * 109.47033 * 300.00183 * 17 16 15 19 19 C 1.50703 * 109.47061 * 180.02562 * 18 17 16 20 20 C 1.38234 * 120.00257 * 119.99964 * 19 18 17 21 21 C 1.38238 * 119.99675 * 180.27927 * 20 19 18 22 22 C 1.38228 * 120.00120 * 359.47825 * 21 20 19 23 23 C 1.38234 * 120.00000 * 0.52176 * 22 21 20 24 24 C 1.38234 * 119.99503 * 300.01565 * 19 18 17 25 25 C 1.52998 * 109.47547 * 59.99757 * 18 17 16 26 26 C 1.52997 * 109.47338 * 64.99729 * 15 14 12 27 27 H 1.09004 * 109.47089 * 269.99516 * 1 2 3 28 28 H 1.08998 * 109.46964 * 29.99295 * 1 2 3 29 29 H 1.08996 * 109.47178 * 149.99687 * 1 2 3 30 30 H 1.09000 * 109.47111 * 30.00860 * 3 2 1 31 31 H 1.09000 * 109.46942 * 149.99963 * 3 2 1 32 32 H 0.97000 * 120.00712 * 180.02562 * 7 6 4 33 33 H 1.08999 * 109.47572 * 60.00143 * 14 12 2 34 34 H 1.08996 * 109.47061 * 299.99728 * 14 12 2 35 35 H 1.09007 * 109.46763 * 304.99768 * 15 14 12 36 36 H 1.08995 * 109.47095 * 179.97438 * 16 15 14 37 37 H 1.09000 * 109.47156 * 59.99659 * 16 15 14 38 38 H 1.08994 * 109.46964 * 180.02562 * 17 16 15 39 39 H 1.09005 * 109.47336 * 59.99524 * 17 16 15 40 40 H 1.09005 * 109.46522 * 299.99840 * 18 17 16 41 41 H 1.08002 * 119.99744 * 359.97438 * 20 19 18 42 42 H 1.08004 * 119.99577 * 179.72816 * 21 20 19 43 43 H 1.07999 * 119.99932 * 180.24104 * 22 21 20 44 44 H 1.08001 * 120.00310 * 179.72161 * 23 22 21 45 45 H 1.07997 * 120.00460 * 0.02562 * 24 19 18 46 46 H 1.09005 * 109.46689 * 60.00179 * 25 18 17 47 47 H 1.08992 * 109.46988 * 180.02562 * 25 18 17 48 48 H 1.08995 * 109.47490 * 180.02562 * 26 15 14 49 49 H 1.09002 * 109.47253 * 300.00596 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0975 1.0963 -2.2416 6 6 3.1260 2.8779 -1.6726 7 7 3.5534 3.6181 -0.6730 8 14 3.4368 3.4177 -3.4338 9 1 2.3063 4.2604 -3.9000 10 1 4.6968 4.2009 -3.4965 11 1 3.5540 2.2208 -4.3049 12 6 2.1388 -1.1672 -0.0005 13 8 3.3517 -1.1673 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 6 2.3795 -3.6353 -0.0005 16 6 1.6187 -4.9567 -0.1262 17 6 0.6584 -5.1067 1.0554 18 6 1.4533 -5.0981 2.3627 19 6 0.5075 -5.2465 3.5266 20 6 0.6336 -6.3210 4.3871 21 6 -0.2377 -6.4601 5.4513 22 6 -1.2281 -5.5190 5.6613 23 6 -1.3542 -4.4445 4.8008 24 6 -0.4863 -4.3082 3.7334 25 6 2.2142 -3.7768 2.4885 26 6 3.1744 -3.6268 1.3068 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3633 0.8900 -0.5137 29 1 -0.3633 -0.8899 -0.5139 30 1 1.6085 2.0283 0.5140 31 1 3.1499 1.1383 0.5138 32 1 4.0296 4.4444 -0.8502 33 1 0.7583 -2.5299 -0.8903 34 1 0.7591 -2.5302 0.8897 35 1 3.0637 -3.5284 -0.8424 36 1 2.3270 -5.7852 -0.1267 37 1 1.0525 -4.9628 -1.0576 38 1 0.1168 -6.0483 0.9661 39 1 -0.0499 -4.2782 1.0555 40 1 2.1616 -5.9267 2.3627 41 1 1.4096 -7.0544 4.2251 42 1 -0.1419 -7.3020 6.1211 43 1 -1.9063 -5.6256 6.4950 44 1 -2.1308 -3.7116 4.9622 45 1 -0.5853 -3.4691 3.0608 46 1 1.5058 -2.9482 2.4885 47 1 2.7807 -3.7709 3.4196 48 1 3.8829 -4.4550 1.3066 49 1 3.7164 -2.6854 1.3964 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108261516.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:36 Heat of formation + Delta-G solvation = -54.880033 kcal Electronic energy + Delta-G solvation = -26685.501565 eV Core-core repulsion = 23189.346641 eV Total energy + Delta-G solvation = -3496.154924 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.38562 -40.28837 -38.75209 -36.53137 -34.75103 -34.15782 -31.71169 -31.61933 -31.03112 -29.71861 -28.06714 -27.11209 -24.79502 -24.10407 -23.44619 -23.25358 -21.48006 -20.43899 -19.01754 -18.69701 -17.84406 -17.73393 -17.00754 -16.84768 -16.30916 -16.07327 -15.97682 -15.40868 -15.10428 -14.71287 -14.51459 -14.28375 -14.19680 -14.07833 -13.80607 -13.71322 -13.49277 -13.40057 -13.14904 -13.06443 -12.88339 -12.78340 -12.64018 -12.55874 -12.20643 -12.17606 -11.95538 -11.90117 -11.72082 -11.70556 -11.06004 -10.98283 -10.87093 -10.65132 -10.36750 -9.73883 -9.48800 -9.35511 -8.22941 -6.38290 0.53893 0.58005 1.34899 1.38154 1.48515 1.93302 2.33710 2.51808 2.95906 3.05957 3.63684 3.74937 3.83231 3.98899 4.06867 4.19915 4.23318 4.32780 4.35783 4.38525 4.45270 4.48666 4.56257 4.66304 4.68123 4.70809 4.72126 4.78205 4.80545 4.88945 4.96881 4.97665 5.03338 5.15821 5.21036 5.23005 5.24875 5.27539 5.29091 5.38538 5.46049 5.56925 5.57977 5.64585 5.67736 5.70889 5.85531 5.87469 6.06427 6.21201 6.70175 6.85801 7.28655 7.57504 8.83901 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.022576 B = 0.002863 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.947036 B = 9778.627941 C =10309.886157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.615 5.615 3 C 0.260 3.740 4 C -0.541 4.541 5 H 0.052 0.948 6 C 0.005 3.995 7 N -0.930 5.930 8 Si 0.969 3.031 9 H -0.262 1.262 10 H -0.281 1.281 11 H -0.273 1.273 12 C 0.492 3.508 13 O -0.592 6.592 14 C -0.123 4.123 15 C -0.069 4.069 16 C -0.104 4.104 17 C -0.106 4.106 18 C -0.040 4.040 19 C -0.081 4.081 20 C -0.131 4.131 21 C -0.127 4.127 22 C -0.136 4.136 23 C -0.129 4.129 24 C -0.128 4.128 25 C -0.103 4.103 26 C -0.117 4.117 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.095 0.905 30 H 0.019 0.981 31 H -0.005 1.005 32 H 0.267 0.733 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.131 0.869 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.133 0.867 45 H 0.123 0.877 46 H 0.056 0.944 47 H 0.052 0.948 48 H 0.064 0.936 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.908 -22.406 8.628 27.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.347 5.347 3 C 0.138 3.862 4 C -0.580 4.580 5 H 0.071 0.929 6 C -0.193 4.193 7 N -0.570 5.570 8 Si 0.793 3.207 9 H -0.187 1.187 10 H -0.206 1.206 11 H -0.198 1.198 12 C 0.282 3.718 13 O -0.473 6.473 14 C -0.162 4.162 15 C -0.088 4.088 16 C -0.141 4.141 17 C -0.143 4.143 18 C -0.058 4.058 19 C -0.081 4.081 20 C -0.149 4.149 21 C -0.145 4.145 22 C -0.154 4.154 23 C -0.147 4.147 24 C -0.146 4.146 25 C -0.140 4.140 26 C -0.155 4.155 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.113 0.887 30 H 0.037 0.963 31 H 0.013 0.987 32 H 0.076 0.924 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.149 0.851 42 H 0.156 0.844 43 H 0.155 0.845 44 H 0.151 0.849 45 H 0.141 0.859 46 H 0.075 0.925 47 H 0.070 0.930 48 H 0.083 0.917 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -12.220 -22.222 8.677 26.804 hybrid contribution 0.729 1.115 -0.626 1.472 sum -11.491 -21.107 8.050 25.345 Atomic orbital electron populations 1.21913 0.78135 1.03942 1.02395 1.48231 1.08283 1.06511 1.71670 1.18697 0.90965 0.80656 0.95879 1.21702 1.36723 1.06475 0.93054 0.92947 1.25891 0.94920 0.96462 1.02061 1.70057 1.39053 1.14786 1.33090 0.85401 0.78111 0.78210 0.78999 1.18695 1.20624 1.19764 1.21529 0.87999 0.86649 0.75625 1.90597 1.16631 1.88033 1.52076 1.21884 0.99145 0.89719 1.05467 1.20840 0.96081 0.94136 0.97724 1.21534 0.98351 0.95358 0.98890 1.21609 0.97534 1.02740 0.92467 1.20140 0.95376 0.97716 0.92560 1.20021 0.96341 0.95086 0.96673 1.21316 1.00028 0.98138 0.95370 1.21420 0.95385 0.99733 0.97962 1.21426 0.99096 0.94873 1.00036 1.21420 0.99562 0.98633 0.95097 1.21199 0.95616 0.99229 0.98546 1.21545 0.97910 0.97228 0.97353 1.21578 0.97984 1.01396 0.94525 0.91380 0.91797 0.88683 0.96254 0.98692 0.92414 0.87329 0.86962 0.93037 0.90975 0.90433 0.90696 0.91179 0.89960 0.85104 0.84437 0.84549 0.84875 0.85869 0.92508 0.92955 0.91685 0.93791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.35 10.24 127.77 1.31 3.66 16 2 N -0.62 -26.56 2.86 -851.14 -2.43 -28.99 16 3 C 0.26 14.41 5.16 85.63 0.44 14.86 16 4 C -0.54 -31.88 9.39 25.60 0.24 -31.64 16 5 H 0.05 3.05 7.81 -2.92 -0.02 3.03 16 6 C 0.01 0.32 5.46 84.65 0.46 0.78 16 7 N -0.93 -57.41 13.29 21.45 0.28 -57.13 16 8 Si 0.97 45.64 29.54 68.60 2.03 47.66 16 9 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 10 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 11 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 12 C 0.49 20.51 7.39 87.66 0.65 21.16 16 13 O -0.59 -30.77 13.55 -3.05 -0.04 -30.81 16 14 C -0.12 -3.35 3.02 29.85 0.09 -3.26 16 15 C -0.07 -1.80 2.31 -10.79 -0.02 -1.83 16 16 C -0.10 -1.84 5.45 30.59 0.17 -1.68 16 17 C -0.11 -1.68 4.74 30.60 0.15 -1.53 16 18 C -0.04 -0.71 2.36 -11.54 -0.03 -0.74 16 19 C -0.08 -1.49 4.78 -19.87 -0.09 -1.58 16 20 C -0.13 -2.19 9.67 22.27 0.22 -1.97 16 21 C -0.13 -1.94 10.05 22.27 0.22 -1.71 16 22 C -0.14 -2.09 10.05 22.27 0.22 -1.86 16 23 C -0.13 -2.16 10.05 22.27 0.22 -1.94 16 24 C -0.13 -2.36 8.71 22.27 0.19 -2.16 16 25 C -0.10 -2.42 4.74 30.59 0.15 -2.28 16 26 C -0.12 -3.32 5.19 30.59 0.16 -3.16 16 27 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 28 H 0.06 2.03 8.07 -2.39 -0.02 2.01 16 29 H 0.09 2.12 6.44 -2.39 -0.02 2.10 16 30 H 0.02 1.09 8.07 -2.39 -0.02 1.07 16 31 H -0.01 -0.32 7.42 -2.39 -0.02 -0.34 16 32 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 33 H 0.11 2.46 7.40 -2.39 -0.02 2.44 16 34 H 0.11 2.53 4.79 -2.39 -0.01 2.52 16 35 H 0.05 1.62 7.96 -2.38 -0.02 1.60 16 36 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.07 1.08 5.79 -2.38 -0.01 1.06 16 40 H 0.08 1.39 7.88 -2.38 -0.02 1.37 16 41 H 0.13 1.78 7.95 -2.91 -0.02 1.76 16 42 H 0.14 1.47 8.06 -2.91 -0.02 1.44 16 43 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 44 H 0.13 1.76 8.06 -2.91 -0.02 1.73 16 45 H 0.12 2.12 7.11 -2.91 -0.02 2.10 16 46 H 0.06 1.41 5.57 -2.38 -0.01 1.39 16 47 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 49 H 0.04 1.65 5.95 -2.39 -0.01 1.64 16 Total: -1.00 -75.72 378.85 5.50 -70.22 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.92 Total: 15.94 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: 4.74 Total: -16.89 kcal Atomic # 7 Polarization: -83.97 SS G_CDS: -2.15 Total: -86.12 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -0.04 Total: -30.81 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -75.72 5.50 -70.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108261516.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.344 kcal (2) G-P(sol) polarization free energy of solvation -75.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds