Wall clock time and date at job start Tue Mar 31 2020 10:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47020 * 2 1 4 4 C 1.50691 * 109.47474 * 120.00042 * 2 1 3 5 5 C 1.33999 * 124.92431 * 259.72605 * 4 2 1 6 6 C 1.46784 * 106.18485 * 179.89665 * 5 4 2 7 7 C 1.39409 * 134.36915 * 180.11930 * 6 5 4 8 8 C 1.36738 * 119.71738 * 180.26227 * 7 6 5 9 9 C 1.38745 * 120.41408 * 359.97438 * 8 7 6 10 10 C 1.37843 * 120.68895 * 0.02562 * 9 8 7 11 11 C 1.38945 * 119.81981 * 359.97438 * 10 9 8 12 12 O 1.34458 * 124.92593 * 80.02471 * 4 2 1 13 13 N 1.46904 * 109.47460 * 240.00519 * 2 1 3 14 14 C 1.46904 * 110.99401 * 306.04315 * 13 2 1 15 15 C 1.46897 * 111.00128 * 69.99684 * 13 2 1 16 16 C 1.53002 * 109.47300 * 149.24562 * 15 13 2 17 17 C 1.52999 * 109.46452 * 297.22377 * 16 15 13 18 18 C 1.52995 * 109.47333 * 57.22079 * 16 15 13 19 19 C 1.52999 * 109.47349 * 177.22528 * 16 15 13 20 20 C 1.50697 * 109.47384 * 179.97438 * 19 16 15 21 21 H 1.08002 * 119.99392 * 359.97438 * 20 19 16 22 22 C 1.37872 * 120.00305 * 180.02562 * 20 19 16 23 23 N 1.31513 * 119.99940 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 119.99838 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.47262 * 90.00265 * 24 22 20 26 26 H 1.48502 * 109.47120 * 210.00124 * 24 22 20 27 27 H 1.48498 * 109.47401 * 330.00180 * 24 22 20 28 28 H 1.08999 * 109.46397 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46998 * 299.99555 * 1 2 3 30 30 H 1.09005 * 109.46719 * 60.00200 * 1 2 3 31 31 H 1.07998 * 126.90508 * 0.02562 * 5 4 2 32 32 H 1.07997 * 120.14181 * 0.28252 * 7 6 5 33 33 H 1.08000 * 119.79348 * 180.02562 * 8 7 6 34 34 H 1.07999 * 119.65231 * 179.97438 * 9 8 7 35 35 H 1.07999 * 120.09655 * 180.02562 * 10 9 8 36 36 H 1.09000 * 109.46886 * 180.02562 * 14 13 2 37 37 H 1.08991 * 109.47113 * 300.02091 * 14 13 2 38 38 H 1.08992 * 109.47102 * 60.02684 * 14 13 2 39 39 H 1.08999 * 109.47694 * 29.23822 * 15 13 2 40 40 H 1.09006 * 109.47137 * 269.24331 * 15 13 2 41 41 H 1.09000 * 109.47369 * 60.00521 * 17 16 15 42 42 H 1.09000 * 109.46961 * 180.02562 * 17 16 15 43 43 H 1.09002 * 109.47467 * 299.99841 * 17 16 15 44 44 H 1.09006 * 109.47097 * 52.07545 * 18 16 15 45 45 H 1.08993 * 109.47435 * 172.07225 * 18 16 15 46 46 H 1.08997 * 109.47179 * 292.07751 * 18 16 15 47 47 H 1.09002 * 109.46987 * 300.00008 * 19 16 15 48 48 H 1.09008 * 109.47248 * 59.99399 * 19 16 15 49 49 H 0.97003 * 119.99826 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.4729 -0.1031 2.3407 6 6 2.8547 -1.1742 3.2688 7 6 3.3722 -1.2043 4.5629 8 6 3.6297 -2.4061 5.1622 9 6 3.3787 -3.5940 4.4907 10 6 2.8671 -3.5840 3.2107 11 6 2.5983 -2.3736 2.5835 12 8 2.1090 -2.0454 1.3711 13 7 2.0198 -0.6924 -1.1995 14 6 1.4344 -2.0354 -1.3079 15 6 1.7530 0.0974 -2.4090 16 6 2.8430 -0.1761 -3.4474 17 6 4.1961 0.2806 -2.8985 18 6 2.8949 -1.6749 -3.7498 19 6 2.5280 0.5929 -4.7321 20 6 3.6019 0.3241 -5.7546 21 1 4.4268 -0.3295 -5.5121 22 6 3.5318 0.9133 -6.9991 23 7 4.4693 0.6790 -7.8912 24 14 2.1054 2.0442 -7.4181 25 1 2.4559 3.4399 -7.0513 26 1 1.8265 1.9704 -8.8748 27 1 0.8997 1.6215 -6.6613 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 2.5328 0.9606 2.5178 32 1 3.5686 -0.2824 5.0900 33 1 4.0302 -2.4308 6.1649 34 1 3.5870 -4.5362 4.9756 35 1 2.6749 -4.5143 2.6970 36 1 1.8141 -2.5260 -2.2041 37 1 1.7057 -2.6219 -0.4301 38 1 0.3492 -1.9548 -1.3699 39 1 1.7490 1.1578 -2.1571 40 1 0.7824 -0.1823 -2.8189 41 1 4.4206 -0.2672 -1.9833 42 1 4.9726 0.0863 -3.6383 43 1 4.1592 1.3485 -2.6830 44 1 1.8961 -2.0287 -4.0060 45 1 3.5694 -1.8535 -4.5871 46 1 3.2558 -2.2104 -2.8718 47 1 1.5639 0.2676 -5.1231 48 1 2.4910 1.6608 -4.5166 49 1 4.4198 1.0933 -8.7669 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126043596.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:22 Heat of formation + Delta-G solvation = 35.120334 kcal Electronic energy + Delta-G solvation = -26738.063149 eV Core-core repulsion = 23245.810934 eV Total energy + Delta-G solvation = -3492.252215 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.59894 -38.98635 -37.91803 -35.77410 -33.11628 -32.27439 -30.83186 -30.55499 -28.64389 -27.74505 -27.48277 -26.08149 -25.01498 -23.49047 -22.68961 -22.06473 -21.31345 -20.14470 -17.93473 -17.54788 -16.90509 -16.73752 -16.27420 -15.75245 -15.60267 -14.74318 -14.48147 -14.22924 -14.13599 -13.73945 -13.60651 -13.32436 -13.25599 -12.96777 -12.67055 -12.55352 -12.36416 -12.33418 -12.10083 -11.89817 -11.65236 -11.43009 -11.36328 -11.06450 -10.90686 -10.81938 -10.58869 -10.38744 -10.33476 -10.23033 -9.73974 -9.63581 -9.20427 -8.92278 -8.77583 -8.48366 -8.31882 -8.03595 -5.98417 -3.94309 0.75767 1.20498 2.23647 2.58221 3.32372 3.40190 3.42991 3.55313 3.95305 4.27378 4.49129 4.50410 4.73538 4.83287 4.90227 4.95492 5.06317 5.13814 5.23250 5.33724 5.40059 5.43422 5.49645 5.55766 5.60787 5.68352 5.71958 5.81141 5.91658 5.94768 6.03734 6.08152 6.15387 6.23734 6.24279 6.28536 6.37542 6.49598 6.51411 6.66153 6.73183 6.82454 7.04748 7.10182 7.18505 7.19326 7.22931 7.34079 7.39720 7.51672 7.87308 8.62048 9.08138 9.64663 11.14757 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.027107 B = 0.002748 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.706348 B =10188.240423 C =10444.614949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.151 3.849 3 H 0.113 0.887 4 C 0.072 3.928 5 C -0.217 4.217 6 C -0.124 4.124 7 C -0.075 4.075 8 C -0.139 4.139 9 C -0.101 4.101 10 C -0.105 4.105 11 C 0.046 3.954 12 O -0.179 6.179 13 N -0.523 5.523 14 C -0.006 4.006 15 C 0.062 3.938 16 C -0.040 4.040 17 C -0.119 4.119 18 C -0.133 4.133 19 C -0.005 4.005 20 C -0.505 4.505 21 H 0.078 0.922 22 C 0.064 3.936 23 N -0.906 5.906 24 Si 0.875 3.125 25 H -0.279 1.279 26 H -0.290 1.290 27 H -0.267 1.267 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.156 0.844 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.025 0.975 39 H 0.065 0.935 40 H 0.038 0.962 41 H 0.045 0.955 42 H 0.060 0.940 43 H 0.036 0.964 44 H 0.037 0.963 45 H 0.068 0.932 46 H 0.048 0.952 47 H 0.012 0.988 48 H 0.009 0.991 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.644 -5.014 25.261 26.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.042 3.958 3 H 0.130 0.870 4 C 0.023 3.977 5 C -0.236 4.236 6 C -0.125 4.125 7 C -0.093 4.093 8 C -0.157 4.157 9 C -0.119 4.119 10 C -0.124 4.124 11 C -0.001 4.001 12 O -0.080 6.080 13 N -0.246 5.246 14 C -0.154 4.154 15 C -0.065 4.065 16 C -0.041 4.041 17 C -0.176 4.176 18 C -0.190 4.190 19 C -0.043 4.043 20 C -0.543 4.543 21 H 0.096 0.904 22 C -0.136 4.136 23 N -0.546 5.546 24 Si 0.703 3.297 25 H -0.205 1.205 26 H -0.216 1.216 27 H -0.192 1.192 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.174 0.826 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.112 0.888 37 H 0.094 0.906 38 H 0.044 0.956 39 H 0.083 0.917 40 H 0.056 0.944 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.087 0.913 46 H 0.067 0.933 47 H 0.030 0.970 48 H 0.027 0.973 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.161 -5.222 24.905 26.182 hybrid contribution -1.571 0.936 -0.353 1.863 sum -7.732 -4.286 24.552 26.095 Atomic orbital electron populations 1.22519 0.95802 1.03203 1.02983 1.20547 0.93102 0.96633 0.85520 0.86965 1.22331 0.98768 0.79983 0.96589 1.22129 1.08679 0.99343 0.93457 1.19941 1.03865 0.92787 0.95913 1.20273 0.97863 0.98453 0.92728 1.20743 1.02372 0.92117 1.00455 1.20888 0.98874 0.98650 0.93482 1.19953 1.02875 0.94455 0.95086 1.19759 1.00131 0.95562 0.84692 1.84117 1.68711 1.23872 1.31296 1.62206 1.57850 1.03061 1.01482 1.23158 0.96972 0.90734 1.04491 1.22407 0.98159 0.96469 0.89435 1.20335 0.93973 0.96024 0.93775 1.21627 0.97100 0.99142 0.99734 1.21983 1.00650 0.95426 1.00934 1.19643 0.97209 0.94629 0.92830 1.21136 1.08300 1.28606 0.96261 0.90371 1.25020 0.95710 0.96425 0.96484 1.69911 1.33853 1.44846 1.05949 0.86852 0.83913 0.81594 0.77306 1.20488 1.21616 1.19203 0.91548 0.91759 0.91099 0.82646 0.85741 0.85589 0.85021 0.85202 0.88834 0.90636 0.95640 0.91696 0.94371 0.93608 0.92087 0.94520 0.94444 0.91343 0.93300 0.96978 0.97277 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.92 8.47 37.16 0.31 -1.61 16 2 C 0.15 1.79 2.68 -68.87 -0.18 1.61 16 3 H 0.11 1.23 7.76 -51.93 -0.40 0.83 16 4 C 0.07 0.90 5.98 -35.80 -0.21 0.69 16 5 C -0.22 -2.53 10.99 -37.62 -0.41 -2.95 16 6 C -0.12 -1.50 6.40 -105.16 -0.67 -2.18 16 7 C -0.08 -0.74 10.05 -39.69 -0.40 -1.14 16 8 C -0.14 -1.18 9.98 -39.94 -0.40 -1.58 16 9 C -0.10 -0.86 10.01 -39.54 -0.40 -1.25 16 10 C -0.11 -1.09 10.07 -39.46 -0.40 -1.49 16 11 C 0.05 0.58 7.42 -38.47 -0.29 0.30 16 12 O -0.18 -2.43 7.66 3.92 0.03 -2.40 16 13 N -0.52 -7.36 3.75 -236.29 -0.89 -8.25 16 14 C -0.01 -0.09 8.05 60.07 0.48 0.40 16 15 C 0.06 0.98 3.36 -3.82 -0.01 0.96 16 16 C -0.04 -0.77 0.60 -154.51 -0.09 -0.87 16 17 C -0.12 -2.29 8.08 37.16 0.30 -1.98 16 18 C -0.13 -2.49 6.64 37.15 0.25 -2.24 16 19 C -0.01 -0.12 3.11 -27.88 -0.09 -0.21 16 20 C -0.51 -13.88 8.10 -34.44 -0.28 -14.16 16 21 H 0.08 2.31 5.96 -52.49 -0.31 1.99 16 22 C 0.06 1.84 5.47 -17.82 -0.10 1.74 16 23 N -0.91 -27.79 13.96 55.43 0.77 -27.02 16 24 Si 0.88 21.67 27.47 -169.99 -4.67 17.00 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 28 H 0.07 0.72 6.33 -51.93 -0.33 0.39 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.73 7.47 -51.93 -0.39 0.34 16 31 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 32 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 34 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 35 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.09 1.33 4.03 -51.93 -0.21 1.12 16 37 H 0.08 1.02 5.14 -51.93 -0.27 0.76 16 38 H 0.03 0.32 6.20 -51.93 -0.32 0.00 16 39 H 0.06 0.97 7.55 -51.93 -0.39 0.58 16 40 H 0.04 0.60 7.76 -51.93 -0.40 0.19 16 41 H 0.04 0.82 7.68 -51.93 -0.40 0.42 16 42 H 0.06 1.32 6.62 -51.93 -0.34 0.97 16 43 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.04 0.66 7.51 -51.93 -0.39 0.27 16 45 H 0.07 1.46 6.40 -51.93 -0.33 1.13 16 46 H 0.05 0.84 6.21 -51.93 -0.32 0.51 16 47 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 48 H 0.01 0.21 7.57 -51.92 -0.39 -0.18 16 49 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 371.32 15.07 5.60 5.60 Total: -1.00 -30.99 371.32 -9.45 -40.43 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -7.71 Total: 0.58 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: -2.59 Total: -25.95 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: -0.11 Total: -35.26 kcal Atomic # 8 Polarization: -2.43 SS G_CDS: 0.03 Total: -2.40 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.99 -9.45 -40.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126043596.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.555 kcal (2) G-P(sol) polarization free energy of solvation -30.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds