Wall clock time and date at job start Tue Mar 31 2020 10:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47020 * 2 1 4 4 C 1.50691 * 109.47474 * 120.00042 * 2 1 3 5 5 C 1.33999 * 124.92431 * 259.72605 * 4 2 1 6 6 C 1.46784 * 106.18485 * 179.89665 * 5 4 2 7 7 C 1.39409 * 134.36915 * 180.11930 * 6 5 4 8 8 C 1.36738 * 119.71738 * 180.26227 * 7 6 5 9 9 C 1.38745 * 120.41408 * 359.97438 * 8 7 6 10 10 C 1.37843 * 120.68895 * 0.02562 * 9 8 7 11 11 C 1.38945 * 119.81981 * 359.97438 * 10 9 8 12 12 O 1.34458 * 124.92593 * 80.02471 * 4 2 1 13 13 N 1.46904 * 109.47460 * 240.00519 * 2 1 3 14 14 C 1.46904 * 110.99401 * 306.04315 * 13 2 1 15 15 C 1.46897 * 111.00128 * 69.99684 * 13 2 1 16 16 C 1.53002 * 109.47300 * 149.24562 * 15 13 2 17 17 C 1.52999 * 109.46452 * 297.22377 * 16 15 13 18 18 C 1.52995 * 109.47333 * 57.22079 * 16 15 13 19 19 C 1.52999 * 109.47349 * 177.22528 * 16 15 13 20 20 C 1.50697 * 109.47384 * 179.97438 * 19 16 15 21 21 H 1.08002 * 119.99392 * 359.97438 * 20 19 16 22 22 C 1.37872 * 120.00305 * 180.02562 * 20 19 16 23 23 N 1.31513 * 119.99940 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 119.99838 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.47262 * 90.00265 * 24 22 20 26 26 H 1.48502 * 109.47120 * 210.00124 * 24 22 20 27 27 H 1.48498 * 109.47401 * 330.00180 * 24 22 20 28 28 H 1.08999 * 109.46397 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46998 * 299.99555 * 1 2 3 30 30 H 1.09005 * 109.46719 * 60.00200 * 1 2 3 31 31 H 1.07998 * 126.90508 * 0.02562 * 5 4 2 32 32 H 1.07997 * 120.14181 * 0.28252 * 7 6 5 33 33 H 1.08000 * 119.79348 * 180.02562 * 8 7 6 34 34 H 1.07999 * 119.65231 * 179.97438 * 9 8 7 35 35 H 1.07999 * 120.09655 * 180.02562 * 10 9 8 36 36 H 1.09000 * 109.46886 * 180.02562 * 14 13 2 37 37 H 1.08991 * 109.47113 * 300.02091 * 14 13 2 38 38 H 1.08992 * 109.47102 * 60.02684 * 14 13 2 39 39 H 1.08999 * 109.47694 * 29.23822 * 15 13 2 40 40 H 1.09006 * 109.47137 * 269.24331 * 15 13 2 41 41 H 1.09000 * 109.47369 * 60.00521 * 17 16 15 42 42 H 1.09000 * 109.46961 * 180.02562 * 17 16 15 43 43 H 1.09002 * 109.47467 * 299.99841 * 17 16 15 44 44 H 1.09006 * 109.47097 * 52.07545 * 18 16 15 45 45 H 1.08993 * 109.47435 * 172.07225 * 18 16 15 46 46 H 1.08997 * 109.47179 * 292.07751 * 18 16 15 47 47 H 1.09002 * 109.46987 * 300.00008 * 19 16 15 48 48 H 1.09008 * 109.47248 * 59.99399 * 19 16 15 49 49 H 0.97003 * 119.99826 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.4729 -0.1031 2.3407 6 6 2.8547 -1.1742 3.2688 7 6 3.3722 -1.2043 4.5629 8 6 3.6297 -2.4061 5.1622 9 6 3.3787 -3.5940 4.4907 10 6 2.8671 -3.5840 3.2107 11 6 2.5983 -2.3736 2.5835 12 8 2.1090 -2.0454 1.3711 13 7 2.0198 -0.6924 -1.1995 14 6 1.4344 -2.0354 -1.3079 15 6 1.7530 0.0974 -2.4090 16 6 2.8430 -0.1761 -3.4474 17 6 4.1961 0.2806 -2.8985 18 6 2.8949 -1.6749 -3.7498 19 6 2.5280 0.5929 -4.7321 20 6 3.6019 0.3241 -5.7546 21 1 4.4268 -0.3295 -5.5121 22 6 3.5318 0.9133 -6.9991 23 7 4.4693 0.6790 -7.8912 24 14 2.1054 2.0442 -7.4181 25 1 2.4559 3.4399 -7.0513 26 1 1.8265 1.9704 -8.8748 27 1 0.8997 1.6215 -6.6613 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 2.5328 0.9606 2.5178 32 1 3.5686 -0.2824 5.0900 33 1 4.0302 -2.4308 6.1649 34 1 3.5870 -4.5362 4.9756 35 1 2.6749 -4.5143 2.6970 36 1 1.8141 -2.5260 -2.2041 37 1 1.7057 -2.6219 -0.4301 38 1 0.3492 -1.9548 -1.3699 39 1 1.7490 1.1578 -2.1571 40 1 0.7824 -0.1823 -2.8189 41 1 4.4206 -0.2672 -1.9833 42 1 4.9726 0.0863 -3.6383 43 1 4.1592 1.3485 -2.6830 44 1 1.8961 -2.0287 -4.0060 45 1 3.5694 -1.8535 -4.5871 46 1 3.2558 -2.2104 -2.8718 47 1 1.5639 0.2676 -5.1231 48 1 2.4910 1.6608 -4.5166 49 1 4.4198 1.0933 -8.7669 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126043596.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:22 Heat of formation + Delta-G solvation = 18.861330 kcal Electronic energy + Delta-G solvation = -26738.768192 eV Core-core repulsion = 23245.810934 eV Total energy + Delta-G solvation = -3492.957258 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.43137 -40.14400 -38.74272 -37.15622 -34.49178 -33.82240 -31.86606 -31.30885 -29.65670 -29.34638 -28.85337 -27.56329 -26.05380 -24.80457 -23.78796 -23.17005 -22.23706 -21.08725 -19.48614 -18.83445 -18.33856 -17.77287 -17.14484 -16.72615 -16.57543 -16.19042 -15.82288 -15.40510 -15.12836 -14.96049 -14.76189 -14.58881 -14.38885 -14.12361 -14.02364 -13.82026 -13.68071 -13.28201 -13.12490 -13.09607 -12.76773 -12.67757 -12.52403 -12.37981 -12.31406 -12.22089 -12.05252 -11.86973 -11.76218 -11.69590 -11.23814 -11.04060 -10.89173 -10.78602 -10.67786 -9.54904 -9.24721 -8.99137 -8.19545 -6.19792 -0.00015 0.44915 1.37523 1.39202 1.40206 1.50236 1.76970 2.41418 2.81461 2.93201 3.15580 3.41200 3.76432 3.93506 4.06710 4.12067 4.15765 4.19456 4.24054 4.32801 4.38041 4.44667 4.48854 4.55351 4.56788 4.71634 4.72414 4.80674 4.83374 4.89425 4.95079 4.97832 5.04410 5.09071 5.10473 5.17972 5.22977 5.37939 5.38834 5.44383 5.48509 5.51669 5.54759 5.55738 5.65066 5.76728 5.80814 5.85395 6.11759 6.13205 6.31181 6.45310 6.87868 7.42370 8.96954 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.027107 B = 0.002748 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.706348 B =10188.240423 C =10444.614949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.153 3.847 3 H 0.124 0.876 4 C 0.052 3.948 5 C -0.217 4.217 6 C -0.149 4.149 7 C -0.085 4.085 8 C -0.137 4.137 9 C -0.095 4.095 10 C -0.123 4.123 11 C 0.015 3.985 12 O -0.196 6.196 13 N -0.534 5.534 14 C -0.002 4.002 15 C 0.074 3.926 16 C -0.041 4.041 17 C -0.108 4.108 18 C -0.123 4.123 19 C -0.003 4.003 20 C -0.502 4.502 21 H 0.041 0.959 22 C -0.002 4.002 23 N -0.957 5.957 24 Si 0.943 3.057 25 H -0.270 1.270 26 H -0.291 1.291 27 H -0.246 1.246 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.175 0.825 32 H 0.144 0.856 33 H 0.157 0.843 34 H 0.163 0.837 35 H 0.140 0.860 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.036 0.964 39 H 0.078 0.922 40 H 0.044 0.956 41 H 0.057 0.943 42 H 0.025 0.975 43 H 0.042 0.958 44 H 0.047 0.953 45 H 0.030 0.970 46 H 0.063 0.937 47 H 0.014 0.986 48 H 0.016 0.984 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.392 -4.301 28.153 29.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.045 3.955 3 H 0.141 0.859 4 C 0.004 3.996 5 C -0.236 4.236 6 C -0.150 4.150 7 C -0.103 4.103 8 C -0.155 4.155 9 C -0.113 4.113 10 C -0.142 4.142 11 C -0.031 4.031 12 O -0.098 6.098 13 N -0.257 5.257 14 C -0.149 4.149 15 C -0.053 4.053 16 C -0.041 4.041 17 C -0.166 4.166 18 C -0.180 4.180 19 C -0.041 4.041 20 C -0.540 4.540 21 H 0.059 0.941 22 C -0.197 4.197 23 N -0.599 5.599 24 Si 0.767 3.233 25 H -0.195 1.195 26 H -0.217 1.217 27 H -0.170 1.170 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.193 0.807 32 H 0.161 0.839 33 H 0.175 0.825 34 H 0.181 0.819 35 H 0.158 0.842 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.054 0.946 39 H 0.097 0.903 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.044 0.956 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.049 0.951 46 H 0.082 0.918 47 H 0.033 0.967 48 H 0.034 0.966 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.919 -4.515 27.830 29.285 hybrid contribution -0.903 0.592 -1.104 1.544 sum -8.822 -3.922 26.727 28.417 Atomic orbital electron populations 1.22452 0.94537 1.02971 1.03825 1.20611 0.94093 0.96706 0.84091 0.85860 1.22475 0.99982 0.79913 0.97205 1.22446 1.07726 1.00281 0.93162 1.20268 1.04973 0.92714 0.97040 1.20627 0.97501 1.00025 0.92119 1.21183 1.01155 0.91519 1.01640 1.21338 0.97061 1.00212 0.92645 1.20304 1.03494 0.94292 0.96062 1.20231 1.01285 0.96810 0.84808 1.84054 1.69311 1.24452 1.32022 1.62056 1.58743 1.03224 1.01646 1.23067 0.97545 0.90456 1.03801 1.22141 0.96526 0.97522 0.89144 1.20278 0.95191 0.95358 0.93320 1.21507 0.96256 0.99735 0.99082 1.21886 1.00277 0.95802 1.00026 1.19598 0.95458 0.95531 0.93477 1.21432 1.08247 1.26959 0.97336 0.94099 1.25958 0.98712 0.98526 0.96521 1.70079 1.36424 1.46857 1.06580 0.85767 0.80903 0.79522 0.77070 1.19506 1.21720 1.16961 0.92294 0.90349 0.90753 0.80746 0.83853 0.82510 0.81938 0.84246 0.89943 0.90832 0.94583 0.90339 0.93795 0.92373 0.95613 0.93845 0.93432 0.95123 0.91823 0.96730 0.96592 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.28 8.47 71.98 0.61 -2.68 16 2 C 0.15 3.34 2.68 44.17 0.12 3.46 16 3 H 0.12 2.38 7.76 -2.38 -0.02 2.36 16 4 C 0.05 1.25 5.98 24.72 0.15 1.40 16 5 C -0.22 -4.79 10.99 23.54 0.26 -4.53 16 6 C -0.15 -3.45 6.40 -20.21 -0.13 -3.58 16 7 C -0.08 -1.50 10.05 22.20 0.22 -1.28 16 8 C -0.14 -1.93 9.98 22.04 0.22 -1.71 16 9 C -0.09 -1.38 10.01 22.30 0.22 -1.15 16 10 C -0.12 -2.42 10.07 22.35 0.23 -2.20 16 11 C 0.02 0.39 7.42 22.99 0.17 0.56 16 12 O -0.20 -5.28 7.66 -8.90 -0.07 -5.35 16 13 N -0.53 -14.13 3.75 -901.47 -3.38 -17.51 16 14 C 0.00 -0.04 8.05 127.69 1.03 0.99 16 15 C 0.07 2.16 3.36 86.30 0.29 2.45 16 16 C -0.04 -1.54 0.60 -52.18 -0.03 -1.57 16 17 C -0.11 -4.18 8.08 71.98 0.58 -3.60 16 18 C -0.12 -4.64 6.64 71.98 0.48 -4.16 16 19 C 0.00 -0.13 3.11 29.85 0.09 -0.03 16 20 C -0.50 -28.30 8.10 25.60 0.21 -28.09 16 21 H 0.04 2.56 5.96 -2.91 -0.02 2.54 16 22 C 0.00 -0.11 5.47 84.65 0.46 0.35 16 23 N -0.96 -60.73 13.96 21.45 0.30 -60.43 16 24 Si 0.94 44.49 27.47 68.60 1.88 46.37 16 25 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 26 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 27 H -0.25 -10.68 6.54 99.48 0.65 -10.03 16 28 H 0.06 1.17 6.33 -2.39 -0.02 1.15 16 29 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.07 1.31 7.47 -2.38 -0.02 1.29 16 31 H 0.18 2.92 8.06 -2.91 -0.02 2.90 16 32 H 0.14 1.86 8.06 -2.91 -0.02 1.83 16 33 H 0.16 1.19 8.06 -2.91 -0.02 1.16 16 34 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 35 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 36 H 0.08 2.28 4.03 -2.39 -0.01 2.27 16 37 H 0.07 1.96 5.14 -2.39 -0.01 1.95 16 38 H 0.04 0.85 6.20 -2.39 -0.01 0.83 16 39 H 0.08 2.10 7.55 -2.39 -0.02 2.08 16 40 H 0.04 1.25 7.76 -2.38 -0.02 1.23 16 41 H 0.06 2.07 7.68 -2.39 -0.02 2.05 16 42 H 0.02 1.14 6.62 -2.39 -0.02 1.12 16 43 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.05 1.66 7.51 -2.38 -0.02 1.64 16 45 H 0.03 1.36 6.40 -2.39 -0.02 1.34 16 46 H 0.06 2.19 6.21 -2.39 -0.01 2.17 16 47 H 0.01 0.65 7.20 -2.39 -0.02 0.64 16 48 H 0.02 0.70 7.57 -2.38 -0.02 0.69 16 49 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -69.31 371.32 4.79 -64.52 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.88 Total: 17.76 kcal Atomic # 6 Polarization: -50.55 SS G_CDS: 5.18 Total: -45.37 kcal Atomic # 7 Polarization: -74.86 SS G_CDS: -3.08 Total: -77.94 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -0.07 Total: -5.35 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.88 Total: 46.37 kcal Total: -69.31 4.79 -64.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126043596.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.381 kcal (2) G-P(sol) polarization free energy of solvation -69.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds