Wall clock time and date at job start Tue Mar 31 2020 11:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.46479 * 2 1 4 4 C 1.52996 * 109.47235 * 240.00083 * 2 1 3 5 5 C 1.52992 * 109.47231 * 64.99547 * 4 2 1 6 6 C 1.50706 * 109.47274 * 180.02562 * 5 4 2 7 7 O 1.21281 * 119.99699 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00080 * 180.02562 * 6 5 4 9 9 C 1.46506 * 119.99969 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.46877 * 269.72057 * 9 8 6 11 11 H 1.08005 * 119.99817 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00081 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00254 * 180.02562 * 12 10 9 14 14 Si 1.86811 * 119.99850 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.46778 * 89.99559 * 14 12 10 16 16 H 1.48493 * 109.46886 * 209.99446 * 14 12 10 17 17 H 1.48492 * 109.47026 * 329.99859 * 14 12 10 18 18 C 1.46499 * 120.00036 * 359.72107 * 8 6 5 19 19 C 1.53001 * 109.47147 * 270.27655 * 18 8 6 20 20 C 1.53001 * 117.50182 * 243.62132 * 19 18 8 21 21 C 1.52999 * 60.00014 * 252.51157 * 20 19 18 22 22 C 1.50702 * 109.47109 * 119.99703 * 2 1 3 23 23 C 1.38242 * 119.99713 * 59.72937 * 22 2 1 24 24 C 1.38234 * 119.99459 * 179.80778 * 23 22 2 25 25 C 1.38230 * 120.00235 * 0.40059 * 24 23 22 26 26 C 1.38237 * 120.00242 * 359.85550 * 25 24 23 27 27 C 1.38230 * 120.00110 * 240.00177 * 22 2 1 28 28 H 1.09002 * 109.47203 * 300.00049 * 1 2 3 29 29 H 1.08995 * 109.46929 * 60.00217 * 1 2 3 30 30 H 1.09003 * 109.46479 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46699 * 304.99746 * 4 2 1 32 32 H 1.08993 * 109.47124 * 184.99897 * 4 2 1 33 33 H 1.09004 * 109.47116 * 60.00455 * 5 4 2 34 34 H 1.08998 * 109.47794 * 300.00366 * 5 4 2 35 35 H 1.09000 * 109.46803 * 29.71536 * 9 8 6 36 36 H 1.09000 * 109.47214 * 149.72329 * 9 8 6 37 37 H 0.97008 * 120.00053 * 180.02562 * 13 12 10 38 38 H 1.08994 * 109.47173 * 30.28203 * 18 8 6 39 39 H 1.09005 * 109.47077 * 150.28374 * 18 8 6 40 40 H 1.08993 * 115.54979 * 29.33116 * 19 18 8 41 41 H 1.09004 * 117.49483 * 0.02562 * 20 19 18 42 42 H 1.08994 * 117.50176 * 145.01848 * 20 19 18 43 43 H 1.08995 * 117.49628 * 252.50731 * 21 20 19 44 44 H 1.08999 * 117.49412 * 107.49208 * 21 20 19 45 45 H 1.07995 * 119.99944 * 359.97438 * 23 22 2 46 46 H 1.07996 * 119.99641 * 180.23047 * 24 23 22 47 47 H 1.08001 * 120.00282 * 179.83235 * 25 24 23 48 48 H 1.07998 * 120.00208 * 179.97438 * 26 25 24 49 49 H 1.08003 * 119.99604 * 359.97438 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6353 0.0689 -2.4952 6 6 2.1371 -0.6419 -3.7258 7 8 2.7571 -1.6785 -3.6168 8 7 1.8970 -0.1255 -4.9473 9 6 2.3844 -0.8167 -6.1435 10 6 3.7636 -0.3154 -6.4865 11 1 4.2305 0.4420 -5.8743 12 6 4.4297 -0.8244 -7.5810 13 7 5.6334 -0.3873 -7.8800 14 14 3.6223 -2.1349 -8.6395 15 1 2.8460 -1.4849 -9.7258 16 1 4.6684 -3.0065 -9.2319 17 1 2.7106 -2.9550 -7.8021 18 6 1.1428 1.1235 -5.0792 19 6 -0.3500 0.8083 -5.1937 20 6 -1.0543 1.1883 -6.4977 21 6 -1.3214 1.9900 -5.2222 22 6 2.0324 -0.7104 1.2305 23 6 1.6938 -2.0322 1.4521 24 6 2.1579 -2.6849 2.5788 25 6 2.9536 -2.0135 3.4880 26 6 3.2879 -0.6901 3.2691 27 6 2.8271 -0.0385 2.1404 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.6055 -1.7198 -1.2951 32 1 3.1263 -0.7994 -1.2056 33 1 2.0699 1.0674 -2.4494 34 1 0.5490 0.1471 -2.5390 35 1 2.4247 -1.8891 -5.9524 36 1 1.7092 -0.6212 -6.9766 37 1 6.1020 -0.7451 -8.6504 38 1 1.3164 1.7471 -4.2022 39 1 1.4717 1.6539 -5.9729 40 1 -0.6783 -0.1010 -4.6905 41 1 -0.4540 1.6625 -7.2742 42 1 -1.8462 0.5288 -6.8527 43 1 -2.2889 1.8580 -4.7381 44 1 -0.8970 2.9921 -5.1595 45 1 1.0690 -2.5556 0.7437 46 1 1.8964 -3.7187 2.7501 47 1 3.3140 -2.5226 4.3697 48 1 3.9093 -0.1654 3.9797 49 1 3.0883 0.9953 1.9692 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132793553.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:09 Heat of formation + Delta-G solvation = -3.694855 kcal Electronic energy + Delta-G solvation = -26040.333092 eV Core-core repulsion = 22546.397724 eV Total energy + Delta-G solvation = -3493.935368 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -39.76302 -39.15645 -37.26937 -35.89053 -34.43154 -32.50894 -31.29006 -30.97464 -29.15806 -28.24291 -26.29355 -25.11874 -23.17157 -22.59390 -22.26521 -21.60352 -20.74516 -19.78905 -18.38338 -17.05669 -16.88389 -16.35540 -15.80593 -15.53094 -15.25375 -14.96268 -14.70211 -14.29532 -14.04046 -13.75390 -13.60072 -13.40200 -13.25146 -12.89264 -12.52525 -12.40739 -12.30387 -12.13378 -11.88663 -11.66022 -11.55338 -11.43438 -11.39975 -11.23711 -10.94321 -10.82405 -10.66395 -10.54987 -10.42024 -10.34780 -10.04089 -9.77894 -9.51190 -8.99463 -8.95671 -8.73124 -8.57084 -7.69477 -6.06666 -4.04935 1.28858 1.32628 3.28205 3.36348 3.40252 3.41624 3.67921 3.75628 3.99457 4.41795 4.56087 4.67639 4.81664 4.90634 4.95890 4.99933 5.02605 5.08052 5.14606 5.24058 5.27184 5.37809 5.42056 5.43365 5.47243 5.56311 5.59155 5.65549 5.67443 5.83092 5.86470 5.91013 5.95465 5.97317 5.98814 6.00684 6.07262 6.19254 6.29669 6.38966 6.40507 6.43708 6.49023 6.62431 6.73695 6.93344 7.02500 7.39324 7.64577 8.30481 8.49807 8.95774 9.04515 9.54197 11.06795 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012646 B = 0.003248 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.608358 B = 8618.164868 C =10112.543804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.055 4.055 3 H 0.078 0.922 4 C -0.094 4.094 5 C -0.140 4.140 6 C 0.506 3.494 7 O -0.541 6.541 8 N -0.591 5.591 9 C 0.217 3.783 10 C -0.527 4.527 11 H 0.074 0.926 12 C 0.072 3.928 13 N -0.898 5.898 14 Si 0.874 3.126 15 H -0.276 1.276 16 H -0.284 1.284 17 H -0.264 1.264 18 C 0.142 3.858 19 C -0.168 4.168 20 C -0.178 4.178 21 C -0.179 4.179 22 C -0.069 4.069 23 C -0.112 4.112 24 C -0.120 4.120 25 C -0.129 4.129 26 C -0.121 4.121 27 C -0.119 4.119 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.039 0.961 36 H 0.025 0.975 37 H 0.264 0.736 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.122 0.878 46 H 0.119 0.881 47 H 0.118 0.882 48 H 0.119 0.881 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.894 3.517 17.749 22.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.073 4.073 3 H 0.097 0.903 4 C -0.132 4.132 5 C -0.180 4.180 6 C 0.294 3.706 7 O -0.418 6.418 8 N -0.322 5.322 9 C 0.096 3.904 10 C -0.565 4.565 11 H 0.092 0.908 12 C -0.130 4.130 13 N -0.537 5.537 14 Si 0.701 3.299 15 H -0.201 1.201 16 H -0.210 1.210 17 H -0.188 1.188 18 C 0.018 3.982 19 C -0.188 4.188 20 C -0.215 4.215 21 C -0.216 4.216 22 C -0.069 4.069 23 C -0.130 4.130 24 C -0.138 4.138 25 C -0.147 4.147 26 C -0.139 4.139 27 C -0.137 4.137 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.057 0.943 36 H 0.043 0.957 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.120 0.880 41 H 0.116 0.884 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.113 0.887 45 H 0.140 0.860 46 H 0.137 0.863 47 H 0.136 0.864 48 H 0.137 0.863 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -13.392 2.929 17.648 22.347 hybrid contribution -0.241 -0.598 -0.750 0.989 sum -13.633 2.331 16.898 21.837 Atomic orbital electron populations 1.21903 0.94378 1.02166 1.01770 1.20236 0.95932 0.99147 0.91986 0.90343 1.21375 1.02152 0.98808 0.90827 1.21763 1.02279 1.00437 0.93493 1.20444 0.80103 0.85577 0.84512 1.90667 1.40569 1.24302 1.86288 1.47882 1.53347 1.23899 1.07084 1.19627 0.94969 0.93847 0.81923 1.21344 0.99433 1.23712 1.12039 0.90830 1.24851 0.94693 0.96241 0.97237 1.69899 1.12503 1.43368 1.27940 0.86873 0.79638 0.82529 0.80880 1.20129 1.20989 1.18846 1.21037 0.87449 0.86796 1.02937 1.22920 0.94568 0.99261 1.02011 1.23020 1.03339 1.03518 0.91600 1.22913 1.00239 0.96324 1.02165 1.19908 0.96981 0.94288 0.95734 1.21048 1.00167 0.94382 0.97410 1.21142 0.98139 0.99764 0.94724 1.21111 0.99127 0.94952 0.99560 1.21117 1.00069 0.95011 0.97680 1.21092 0.98172 0.99958 0.94460 0.92803 0.91878 0.92470 0.91161 0.90969 0.89474 0.89340 0.94287 0.95734 0.92617 0.90809 0.89711 0.87964 0.88422 0.89218 0.89133 0.88725 0.86027 0.86267 0.86428 0.86307 0.86156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.76 37.16 0.33 -0.99 16 2 C -0.05 -0.58 2.56 -91.77 -0.24 -0.81 16 3 H 0.08 0.77 7.88 -51.93 -0.41 0.36 16 4 C -0.09 -1.27 3.71 -26.74 -0.10 -1.37 16 5 C -0.14 -1.95 4.01 -27.88 -0.11 -2.07 16 6 C 0.51 10.18 7.67 -10.98 -0.08 10.09 16 7 O -0.54 -13.35 15.56 5.56 0.09 -13.26 16 8 N -0.59 -12.02 2.46 -175.05 -0.43 -12.45 16 9 C 0.22 5.34 4.23 -5.19 -0.02 5.32 16 10 C -0.53 -15.23 9.94 -34.44 -0.34 -15.58 16 11 H 0.07 2.33 8.06 -52.48 -0.42 1.91 16 12 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 13 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 14 Si 0.87 21.79 27.47 -169.99 -4.67 17.12 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 17 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 18 C 0.14 2.20 5.49 -4.04 -0.02 2.18 16 19 C -0.17 -2.17 5.92 -90.62 -0.54 -2.71 16 20 C -0.18 -2.14 10.18 -26.73 -0.27 -2.41 16 21 C -0.18 -1.82 10.25 -26.73 -0.27 -2.09 16 22 C -0.07 -0.78 4.78 -104.62 -0.50 -1.28 16 23 C -0.11 -1.25 8.76 -39.58 -0.35 -1.60 16 24 C -0.12 -1.23 10.05 -39.59 -0.40 -1.63 16 25 C -0.13 -1.26 10.05 -39.58 -0.40 -1.66 16 26 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 27 C -0.12 -1.26 9.67 -39.59 -0.38 -1.64 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.53 6.56 -51.93 -0.34 0.19 16 30 H 0.06 0.52 7.37 -51.93 -0.38 0.14 16 31 H 0.07 1.01 7.54 -51.93 -0.39 0.62 16 32 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 33 H 0.09 1.10 7.41 -51.93 -0.38 0.72 16 34 H 0.09 1.03 6.44 -51.93 -0.33 0.69 16 35 H 0.04 1.05 6.47 -51.93 -0.34 0.71 16 36 H 0.02 0.57 7.50 -51.93 -0.39 0.18 16 37 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 38 H 0.07 0.96 6.45 -51.93 -0.33 0.63 16 39 H 0.08 1.40 7.81 -51.93 -0.41 1.00 16 40 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.10 1.22 8.03 -51.93 -0.42 0.80 16 42 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.12 1.27 7.16 -52.49 -0.38 0.90 16 46 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 47 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 48 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 49 H 0.12 1.08 7.95 -52.48 -0.42 0.66 16 LS Contribution 395.67 15.07 5.96 5.96 Total: -1.00 -34.23 395.67 -10.78 -45.01 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -8.31 Total: 2.57 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -4.19 Total: -17.81 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.34 Total: -39.60 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.09 Total: -13.26 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.23 -10.78 -45.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132793553.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.319 kcal (2) G-P(sol) polarization free energy of solvation -34.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds