Wall clock time and date at job start Tue Mar 31 2020 11:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.46479 * 2 1 4 4 C 1.52996 * 109.47235 * 240.00083 * 2 1 3 5 5 C 1.52992 * 109.47231 * 64.99547 * 4 2 1 6 6 C 1.50706 * 109.47274 * 180.02562 * 5 4 2 7 7 O 1.21281 * 119.99699 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00080 * 180.02562 * 6 5 4 9 9 C 1.46506 * 119.99969 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.46877 * 269.72057 * 9 8 6 11 11 H 1.08005 * 119.99817 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00081 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00254 * 180.02562 * 12 10 9 14 14 Si 1.86811 * 119.99850 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.46778 * 89.99559 * 14 12 10 16 16 H 1.48493 * 109.46886 * 209.99446 * 14 12 10 17 17 H 1.48492 * 109.47026 * 329.99859 * 14 12 10 18 18 C 1.46499 * 120.00036 * 359.72107 * 8 6 5 19 19 C 1.53001 * 109.47147 * 270.27655 * 18 8 6 20 20 C 1.53001 * 117.50182 * 243.62132 * 19 18 8 21 21 C 1.52999 * 60.00014 * 252.51157 * 20 19 18 22 22 C 1.50702 * 109.47109 * 119.99703 * 2 1 3 23 23 C 1.38242 * 119.99713 * 59.72937 * 22 2 1 24 24 C 1.38234 * 119.99459 * 179.80778 * 23 22 2 25 25 C 1.38230 * 120.00235 * 0.40059 * 24 23 22 26 26 C 1.38237 * 120.00242 * 359.85550 * 25 24 23 27 27 C 1.38230 * 120.00110 * 240.00177 * 22 2 1 28 28 H 1.09002 * 109.47203 * 300.00049 * 1 2 3 29 29 H 1.08995 * 109.46929 * 60.00217 * 1 2 3 30 30 H 1.09003 * 109.46479 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46699 * 304.99746 * 4 2 1 32 32 H 1.08993 * 109.47124 * 184.99897 * 4 2 1 33 33 H 1.09004 * 109.47116 * 60.00455 * 5 4 2 34 34 H 1.08998 * 109.47794 * 300.00366 * 5 4 2 35 35 H 1.09000 * 109.46803 * 29.71536 * 9 8 6 36 36 H 1.09000 * 109.47214 * 149.72329 * 9 8 6 37 37 H 0.97008 * 120.00053 * 180.02562 * 13 12 10 38 38 H 1.08994 * 109.47173 * 30.28203 * 18 8 6 39 39 H 1.09005 * 109.47077 * 150.28374 * 18 8 6 40 40 H 1.08993 * 115.54979 * 29.33116 * 19 18 8 41 41 H 1.09004 * 117.49483 * 0.02562 * 20 19 18 42 42 H 1.08994 * 117.50176 * 145.01848 * 20 19 18 43 43 H 1.08995 * 117.49628 * 252.50731 * 21 20 19 44 44 H 1.08999 * 117.49412 * 107.49208 * 21 20 19 45 45 H 1.07995 * 119.99944 * 359.97438 * 23 22 2 46 46 H 1.07996 * 119.99641 * 180.23047 * 24 23 22 47 47 H 1.08001 * 120.00282 * 179.83235 * 25 24 23 48 48 H 1.07998 * 120.00208 * 179.97438 * 26 25 24 49 49 H 1.08003 * 119.99604 * 359.97438 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6353 0.0689 -2.4952 6 6 2.1371 -0.6419 -3.7258 7 8 2.7571 -1.6785 -3.6168 8 7 1.8970 -0.1255 -4.9473 9 6 2.3844 -0.8167 -6.1435 10 6 3.7636 -0.3154 -6.4865 11 1 4.2305 0.4420 -5.8743 12 6 4.4297 -0.8244 -7.5810 13 7 5.6334 -0.3873 -7.8800 14 14 3.6223 -2.1349 -8.6395 15 1 2.8460 -1.4849 -9.7258 16 1 4.6684 -3.0065 -9.2319 17 1 2.7106 -2.9550 -7.8021 18 6 1.1428 1.1235 -5.0792 19 6 -0.3500 0.8083 -5.1937 20 6 -1.0543 1.1883 -6.4977 21 6 -1.3214 1.9900 -5.2222 22 6 2.0324 -0.7104 1.2305 23 6 1.6938 -2.0322 1.4521 24 6 2.1579 -2.6849 2.5788 25 6 2.9536 -2.0135 3.4880 26 6 3.2879 -0.6901 3.2691 27 6 2.8271 -0.0385 2.1404 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.6055 -1.7198 -1.2951 32 1 3.1263 -0.7994 -1.2056 33 1 2.0699 1.0674 -2.4494 34 1 0.5490 0.1471 -2.5390 35 1 2.4247 -1.8891 -5.9524 36 1 1.7092 -0.6212 -6.9766 37 1 6.1020 -0.7451 -8.6504 38 1 1.3164 1.7471 -4.2022 39 1 1.4717 1.6539 -5.9729 40 1 -0.6783 -0.1010 -4.6905 41 1 -0.4540 1.6625 -7.2742 42 1 -1.8462 0.5288 -6.8527 43 1 -2.2889 1.8580 -4.7381 44 1 -0.8970 2.9921 -5.1595 45 1 1.0690 -2.5556 0.7437 46 1 1.8964 -3.7187 2.7501 47 1 3.3140 -2.5226 4.3697 48 1 3.9093 -0.1654 3.9797 49 1 3.0883 0.9953 1.9692 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132793553.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:04 Heat of formation + Delta-G solvation = -21.654929 kcal Electronic energy + Delta-G solvation = -26041.111899 eV Core-core repulsion = 22546.397724 eV Total energy + Delta-G solvation = -3494.714175 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -40.98844 -40.25447 -38.38882 -36.87565 -36.06125 -34.61468 -32.45100 -31.74712 -30.55103 -29.50963 -27.65456 -26.33102 -24.45871 -23.59504 -23.12656 -22.90486 -21.82217 -20.68628 -19.86379 -19.09992 -18.09308 -17.55492 -17.26942 -16.76357 -16.17423 -16.12251 -16.03704 -15.64715 -15.18806 -14.88259 -14.62972 -14.49712 -14.34632 -14.18665 -14.03382 -13.66738 -13.61298 -13.43997 -13.11781 -12.99547 -12.70451 -12.62818 -12.42526 -12.40579 -12.25369 -12.08576 -12.02486 -11.81559 -11.77791 -11.49543 -11.35747 -11.22680 -10.83935 -10.80541 -10.57580 -9.77633 -9.54403 -9.40468 -8.35524 -6.40041 0.50239 0.54328 1.28994 1.33733 1.44638 1.83781 2.28803 2.30458 2.92241 2.98163 3.00235 3.61311 3.72066 3.89018 3.95412 4.06479 4.16889 4.18790 4.20253 4.24601 4.32578 4.39801 4.48977 4.50908 4.56865 4.60969 4.69198 4.72585 4.74611 4.76465 4.88306 4.91090 4.97548 5.05543 5.08626 5.11377 5.11631 5.22177 5.24635 5.32274 5.37096 5.39450 5.44858 5.46596 5.63708 5.66459 5.67135 5.81075 6.17813 6.23477 6.60978 6.73681 7.21115 7.45997 8.81486 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012646 B = 0.003248 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.608358 B = 8618.164868 C =10112.543804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.045 4.045 3 H 0.091 0.909 4 C -0.086 4.086 5 C -0.124 4.124 6 C 0.494 3.506 7 O -0.599 6.599 8 N -0.598 5.598 9 C 0.228 3.772 10 C -0.535 4.535 11 H 0.029 0.971 12 C 0.012 3.988 13 N -0.945 5.945 14 Si 0.946 3.054 15 H -0.250 1.250 16 H -0.281 1.281 17 H -0.259 1.259 18 C 0.139 3.861 19 C -0.181 4.181 20 C -0.192 4.192 21 C -0.145 4.145 22 C -0.085 4.085 23 C -0.130 4.130 24 C -0.131 4.131 25 C -0.136 4.136 26 C -0.128 4.128 27 C -0.131 4.131 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.039 0.961 33 H 0.108 0.892 34 H 0.123 0.877 35 H 0.015 0.985 36 H 0.043 0.957 37 H 0.268 0.732 38 H 0.102 0.898 39 H 0.069 0.931 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.113 0.887 44 H 0.107 0.893 45 H 0.120 0.880 46 H 0.134 0.866 47 H 0.139 0.861 48 H 0.140 0.860 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.685 4.467 18.658 25.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.063 4.063 3 H 0.110 0.890 4 C -0.125 4.125 5 C -0.163 4.163 6 C 0.284 3.716 7 O -0.480 6.480 8 N -0.328 5.328 9 C 0.106 3.894 10 C -0.573 4.573 11 H 0.047 0.953 12 C -0.186 4.186 13 N -0.585 5.585 14 Si 0.768 3.232 15 H -0.174 1.174 16 H -0.206 1.206 17 H -0.183 1.183 18 C 0.016 3.984 19 C -0.201 4.201 20 C -0.229 4.229 21 C -0.182 4.182 22 C -0.085 4.085 23 C -0.148 4.148 24 C -0.149 4.149 25 C -0.154 4.154 26 C -0.146 4.146 27 C -0.149 4.149 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.126 0.874 34 H 0.141 0.859 35 H 0.033 0.967 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.120 0.880 39 H 0.087 0.913 40 H 0.119 0.881 41 H 0.106 0.894 42 H 0.115 0.885 43 H 0.131 0.869 44 H 0.125 0.875 45 H 0.138 0.862 46 H 0.152 0.848 47 H 0.157 0.843 48 H 0.158 0.842 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.225 3.931 18.567 24.968 hybrid contribution 0.714 -0.846 -0.971 1.473 sum -15.510 3.085 17.596 23.658 Atomic orbital electron populations 1.21889 0.92813 1.02305 1.02894 1.20159 0.97125 0.99081 0.89942 0.89048 1.21276 1.00045 0.98719 0.92414 1.21769 1.04179 1.00285 0.90059 1.21577 0.78989 0.85118 0.85898 1.90631 1.43168 1.27046 1.87173 1.47985 1.53553 1.25198 1.06020 1.19224 0.93105 0.92740 0.84361 1.21569 1.01488 1.22775 1.11488 0.95294 1.25829 0.95236 0.98729 0.98841 1.70049 1.14295 1.45176 1.28975 0.85740 0.78854 0.79313 0.79256 1.17435 1.20646 1.18276 1.21287 0.88729 0.84805 1.03552 1.22700 0.92962 1.00967 1.03436 1.23103 1.03480 1.04495 0.91777 1.23022 0.99984 0.95596 0.99624 1.20071 0.97629 0.94552 0.96290 1.21204 1.00829 0.94792 0.97993 1.21420 0.98227 1.00649 0.94636 1.21443 0.98675 0.95174 1.00116 1.21453 0.99987 0.95269 0.97864 1.21361 0.98064 1.00814 0.94697 0.91756 0.90586 0.92893 0.92596 0.94237 0.87369 0.85871 0.96703 0.93935 0.92274 0.88013 0.91297 0.88136 0.89406 0.88462 0.86879 0.87492 0.86176 0.84828 0.84305 0.84208 0.84795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 8.76 71.98 0.63 -1.58 16 2 C -0.04 -0.88 2.56 -11.54 -0.03 -0.91 16 3 H 0.09 1.57 7.88 -2.39 -0.02 1.55 16 4 C -0.09 -2.35 3.71 30.59 0.11 -2.24 16 5 C -0.12 -3.29 4.01 29.85 0.12 -3.18 16 6 C 0.49 20.19 7.67 87.66 0.67 20.86 16 7 O -0.60 -30.97 15.56 -3.03 -0.05 -31.02 16 8 N -0.60 -24.48 2.46 -826.13 -2.03 -26.51 16 9 C 0.23 11.46 4.23 85.63 0.36 11.82 16 10 C -0.53 -32.16 9.94 25.60 0.25 -31.91 16 11 H 0.03 1.94 8.06 -2.91 -0.02 1.91 16 12 C 0.01 0.70 5.47 84.65 0.46 1.16 16 13 N -0.94 -60.61 13.96 21.44 0.30 -60.31 16 14 Si 0.95 45.51 27.47 68.60 1.88 47.39 16 15 H -0.25 -10.99 7.11 99.48 0.71 -10.28 16 16 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 17 H -0.26 -12.14 6.54 99.48 0.65 -11.49 16 18 C 0.14 4.11 5.49 86.38 0.47 4.59 16 19 C -0.18 -4.21 5.92 -10.79 -0.06 -4.28 16 20 C -0.19 -4.13 10.18 30.59 0.31 -3.82 16 21 C -0.14 -2.36 10.25 30.59 0.31 -2.04 16 22 C -0.09 -1.86 4.78 -19.86 -0.09 -1.96 16 23 C -0.13 -2.90 8.76 22.27 0.20 -2.70 16 24 C -0.13 -2.63 10.05 22.27 0.22 -2.40 16 25 C -0.14 -2.48 10.05 22.27 0.22 -2.26 16 26 C -0.13 -2.34 10.05 22.27 0.22 -2.11 16 27 C -0.13 -2.63 9.67 22.27 0.22 -2.41 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.08 0.98 6.56 -2.39 -0.02 0.96 16 30 H 0.05 0.87 7.37 -2.39 -0.02 0.86 16 31 H 0.06 1.66 7.54 -2.39 -0.02 1.64 16 32 H 0.04 1.31 8.10 -2.39 -0.02 1.29 16 33 H 0.11 2.48 7.41 -2.39 -0.02 2.46 16 34 H 0.12 2.46 6.44 -2.39 -0.02 2.45 16 35 H 0.01 0.82 6.47 -2.39 -0.02 0.80 16 36 H 0.04 1.97 7.50 -2.39 -0.02 1.96 16 37 H 0.27 15.97 8.31 -92.70 -0.77 15.20 16 38 H 0.10 2.39 6.45 -2.39 -0.02 2.38 16 39 H 0.07 2.25 7.81 -2.38 -0.02 2.23 16 40 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.09 2.06 8.03 -2.38 -0.02 2.04 16 42 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.12 2.58 7.16 -2.91 -0.02 2.56 16 46 H 0.13 2.14 8.06 -2.91 -0.02 2.12 16 47 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 48 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 49 H 0.13 2.19 7.95 -2.91 -0.02 2.17 16 Total: -1.00 -79.43 395.67 5.57 -73.86 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: 0.85 Total: 21.96 kcal Atomic # 6 Polarization: -29.99 SS G_CDS: 4.61 Total: -25.38 kcal Atomic # 7 Polarization: -85.09 SS G_CDS: -1.73 Total: -86.82 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -0.05 Total: -31.02 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.88 Total: 47.39 kcal Total: -79.43 5.57 -73.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132793553.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.208 kcal (2) G-P(sol) polarization free energy of solvation -79.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds