Wall clock time and date at job start Tue Mar 31 2020 10:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 110.43270 * 2 1 4 4 C 1.54268 * 110.59832 * 237.38663 * 2 1 3 5 5 C 1.54087 * 106.62308 * 217.54404 * 4 2 1 6 6 C 1.54274 * 106.48993 * 0.17118 * 5 4 2 7 7 H 1.08995 * 110.48286 * 264.70240 * 6 5 4 8 8 C 1.52998 * 110.48251 * 142.19599 * 6 5 4 9 9 C 1.50705 * 109.47129 * 68.24397 * 8 6 5 10 10 O 1.21278 * 120.00031 * 359.97438 * 9 8 6 11 11 N 1.34780 * 120.00025 * 179.97438 * 9 8 6 12 12 C 1.46498 * 120.00026 * 179.97438 * 11 9 8 13 13 H 1.08996 * 109.46956 * 34.99996 * 12 11 9 14 14 C 1.53001 * 109.47080 * 155.00227 * 12 11 9 15 15 C 1.50699 * 109.46766 * 294.99754 * 14 12 11 16 16 H 1.08002 * 120.00341 * 0.02562 * 15 14 12 17 17 C 1.37876 * 119.99732 * 179.97438 * 15 14 12 18 18 N 1.31516 * 120.00190 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00341 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47077 * 89.99277 * 19 17 15 21 21 H 1.48496 * 109.47393 * 209.99921 * 19 17 15 22 22 H 1.48507 * 109.46811 * 330.00098 * 19 17 15 23 23 C 1.50701 * 109.47139 * 275.00165 * 12 11 9 24 24 C 1.38234 * 120.00243 * 139.99942 * 23 12 11 25 25 C 1.38234 * 120.00240 * 180.02562 * 24 23 12 26 26 C 1.38233 * 120.00037 * 0.26327 * 25 24 23 27 27 C 1.38238 * 119.99752 * 359.47832 * 26 25 24 28 28 C 1.38234 * 120.00005 * 0.52168 * 27 26 25 29 29 C 1.54885 * 104.31356 * 23.45548 * 6 5 4 30 30 H 1.08997 * 109.46640 * 297.45293 * 1 2 3 31 31 H 1.08999 * 109.47238 * 57.45466 * 1 2 3 32 32 H 1.09004 * 109.46710 * 177.45729 * 1 2 3 33 33 H 1.08999 * 110.03020 * 336.93623 * 4 2 1 34 34 H 1.09002 * 110.03446 * 98.32185 * 4 2 1 35 35 H 1.08998 * 110.16278 * 240.88114 * 5 4 2 36 36 H 1.08995 * 110.00737 * 119.37726 * 5 4 2 37 37 H 1.08997 * 109.47510 * 308.24051 * 8 6 5 38 38 H 1.09003 * 109.47280 * 188.23744 * 8 6 5 39 39 H 0.97007 * 119.99845 * 359.97438 * 11 9 8 40 40 H 1.08993 * 109.47392 * 54.99966 * 14 12 11 41 41 H 1.09001 * 109.46866 * 175.00052 * 14 12 11 42 42 H 0.96999 * 120.00724 * 180.02562 * 18 17 15 43 43 H 1.07999 * 119.99751 * 359.97438 * 24 23 12 44 44 H 1.08002 * 119.99744 * 179.97438 * 25 24 23 45 45 H 1.07998 * 120.00395 * 179.72811 * 26 25 24 46 46 H 1.07999 * 119.99924 * 180.23487 * 27 26 25 47 47 H 1.08001 * 120.00310 * 179.72165 * 28 27 26 48 48 H 1.08997 * 110.76168 * 80.43762 * 29 6 5 49 49 H 1.08997 * 110.75544 * 203.62849 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0215 0.0000 4 6 2.0728 -0.7783 -1.2164 5 6 3.3237 -1.5366 -0.7321 6 6 3.4921 -1.1940 0.7627 7 1 4.1900 -0.3663 0.8880 8 6 3.9719 -2.4200 1.5422 9 6 5.3828 -2.7553 1.1323 10 8 5.9487 -2.0804 0.2985 11 7 6.0158 -3.8051 1.6924 12 6 7.3872 -4.1314 1.2935 13 1 7.9330 -3.2116 1.0835 14 6 8.0814 -4.8890 2.4271 15 6 8.2190 -3.9849 3.6249 16 1 7.8480 -2.9715 3.5821 17 6 8.8176 -4.4518 4.7759 18 7 8.9381 -3.6628 5.8211 19 14 9.4587 -6.2048 4.8503 20 1 10.8732 -6.2341 4.3990 21 1 9.3739 -6.7041 6.2462 22 1 8.6386 -7.0698 3.9644 23 6 7.3594 -4.9925 0.0571 24 6 8.2853 -4.7879 -0.9487 25 6 8.2594 -5.5774 -2.0831 26 6 7.3042 -6.5680 -2.2141 27 6 6.3816 -6.7762 -1.2059 28 6 6.4075 -5.9867 -0.0715 29 6 2.0722 -0.7806 1.2231 30 1 -0.3632 0.4738 0.9119 31 1 -0.3634 0.5528 -0.8663 32 1 -0.3633 -1.0267 -0.0456 33 1 1.3221 -1.4832 -1.5737 34 1 2.3429 -0.0851 -2.0130 35 1 4.2007 -1.2102 -1.2910 36 1 3.1800 -2.6100 -0.8552 37 1 3.3199 -3.2662 1.3258 38 1 3.9454 -2.2047 2.6104 39 1 5.5633 -4.3447 2.3596 40 1 7.4880 -5.7623 2.6973 41 1 9.0701 -5.2091 2.0981 42 1 9.3596 -3.9911 6.6307 43 1 9.0284 -4.0106 -0.8486 44 1 8.9826 -5.4172 -2.8691 45 1 7.2812 -7.1820 -3.1023 46 1 5.6378 -7.5527 -1.3066 47 1 5.6839 -6.1463 0.7142 48 1 1.4595 -1.6596 1.4228 49 1 2.1229 -0.1389 2.1027 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153748436.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:15 Heat of formation + Delta-G solvation = -48.473277 kcal Electronic energy + Delta-G solvation = -26450.694756 eV Core-core repulsion = 22954.817650 eV Total energy + Delta-G solvation = -3495.877106 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.84305 -38.89899 -37.86229 -35.24615 -32.69784 -32.54717 -31.20761 -30.55553 -29.57675 -29.24000 -27.19948 -25.07239 -23.94934 -22.33227 -21.77201 -20.68051 -20.09426 -19.74239 -19.20763 -17.14974 -16.59669 -16.35452 -16.11290 -15.50110 -15.01288 -14.56216 -14.41246 -14.25213 -14.03230 -13.68891 -13.41138 -13.16262 -13.06593 -12.96950 -12.84295 -12.57879 -12.40964 -12.09091 -11.89109 -11.72890 -11.34652 -11.11098 -10.99881 -10.85990 -10.74419 -10.71217 -10.62677 -10.60695 -10.51016 -10.29668 -10.15676 -9.85716 -9.35850 -9.21547 -8.64564 -8.61000 -8.43440 -8.29092 -6.12230 -4.11970 1.68061 1.70604 3.20749 3.25021 3.33131 3.35251 3.75509 4.15618 4.36985 4.55127 4.60005 4.71051 5.13046 5.16832 5.18462 5.20523 5.25649 5.26443 5.32236 5.38650 5.43584 5.48733 5.54716 5.61002 5.65532 5.75773 5.79873 5.81719 5.83869 5.89541 5.90364 6.04142 6.08125 6.14612 6.16246 6.24727 6.31076 6.32749 6.43637 6.48982 6.56907 6.73684 6.76134 6.83737 6.93521 7.06866 7.30605 7.36522 7.64351 8.15670 8.43131 8.83275 8.93585 9.48667 11.00533 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.010599 B = 0.004016 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2641.146119 B = 6969.596294 C = 9006.377470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.072 0.928 4 C -0.121 4.121 5 C -0.112 4.112 6 C -0.073 4.073 7 H 0.082 0.918 8 C -0.135 4.135 9 C 0.512 3.488 10 O -0.547 6.547 11 N -0.704 5.704 12 C 0.194 3.806 13 H 0.091 0.909 14 C -0.014 4.014 15 C -0.520 4.520 16 H 0.076 0.924 17 C 0.071 3.929 18 N -0.898 5.898 19 Si 0.875 3.125 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.265 1.265 23 C -0.074 4.074 24 C -0.108 4.108 25 C -0.122 4.122 26 C -0.134 4.134 27 C -0.125 4.125 28 C -0.109 4.109 29 C -0.117 4.117 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.400 0.600 40 H 0.023 0.977 41 H 0.028 0.972 42 H 0.264 0.736 43 H 0.121 0.879 44 H 0.117 0.883 45 H 0.114 0.886 46 H 0.115 0.885 47 H 0.117 0.883 48 H 0.067 0.933 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.551 -0.360 -12.933 18.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.090 0.910 4 C -0.159 4.159 5 C -0.150 4.150 6 C -0.092 4.092 7 H 0.100 0.900 8 C -0.175 4.175 9 C 0.298 3.702 10 O -0.425 6.425 11 N -0.353 5.353 12 C 0.090 3.910 13 H 0.109 0.891 14 C -0.051 4.051 15 C -0.558 4.558 16 H 0.094 0.906 17 C -0.131 4.131 18 N -0.536 5.536 19 Si 0.702 3.298 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.190 1.190 23 C -0.075 4.075 24 C -0.126 4.126 25 C -0.140 4.140 26 C -0.152 4.152 27 C -0.143 4.143 28 C -0.128 4.128 29 C -0.154 4.154 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.105 0.895 38 H 0.111 0.889 39 H 0.234 0.766 40 H 0.041 0.959 41 H 0.046 0.954 42 H 0.074 0.926 43 H 0.139 0.861 44 H 0.135 0.865 45 H 0.132 0.868 46 H 0.133 0.867 47 H 0.135 0.865 48 H 0.086 0.914 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.068 0.132 -13.330 18.668 hybrid contribution 0.288 -1.279 0.582 1.434 sum -12.780 -1.147 -12.748 18.087 Atomic orbital electron populations 1.21802 0.95302 1.01611 1.01333 1.21947 0.95086 0.99356 0.95260 0.90957 1.22278 0.97481 0.98733 0.97358 1.22161 0.97509 0.99606 0.95698 1.21701 0.96034 0.96949 0.94532 0.90008 1.21751 0.94068 0.99504 1.02188 1.20561 0.88189 0.80156 0.81286 1.90640 1.67998 1.50587 1.33296 1.45931 1.15467 1.31051 1.42842 1.19918 0.82702 0.97440 0.90980 0.89134 1.19864 0.95764 0.96179 0.93317 1.21015 1.39330 0.99972 0.95465 0.90622 1.24986 0.95315 0.97242 0.95571 1.69904 1.44066 1.36020 1.03651 0.86857 0.79938 0.85669 0.77297 1.20217 1.21351 1.18985 1.20590 0.94737 0.96013 0.96208 1.21047 0.98915 0.99392 0.93295 1.21059 0.98855 0.96303 0.97823 1.21011 0.96392 0.98898 0.98923 1.21049 0.99206 0.99674 0.94403 1.20922 0.98767 0.95430 0.97634 1.22645 0.95759 0.99719 0.97313 0.92807 0.92989 0.92730 0.92168 0.92309 0.91017 0.92462 0.89461 0.88891 0.76572 0.95909 0.95385 0.92637 0.86074 0.86541 0.86795 0.86714 0.86541 0.91420 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.15 37.16 0.34 -0.81 16 2 C -0.10 -0.94 3.45 -88.96 -0.31 -1.25 16 3 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 4 C -0.12 -1.25 6.38 -25.50 -0.16 -1.41 16 5 C -0.11 -1.41 5.50 -25.50 -0.14 -1.55 16 6 C -0.07 -0.92 2.46 -88.96 -0.22 -1.14 16 7 H 0.08 1.19 7.96 -51.93 -0.41 0.77 16 8 C -0.14 -1.76 5.09 -27.88 -0.14 -1.90 16 9 C 0.51 8.80 7.58 -10.98 -0.08 8.72 16 10 O -0.55 -11.14 14.55 5.56 0.08 -11.06 16 11 N -0.70 -12.36 4.03 -54.93 -0.22 -12.58 16 12 C 0.19 3.82 2.12 -69.08 -0.15 3.68 16 13 H 0.09 2.00 7.44 -51.93 -0.39 1.61 16 14 C -0.01 -0.30 3.56 -27.88 -0.10 -0.40 16 15 C -0.52 -13.89 9.39 -34.44 -0.32 -14.22 16 16 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 17 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 18 N -0.90 -26.71 13.96 55.43 0.77 -25.94 16 19 Si 0.88 20.84 27.47 -169.99 -4.67 16.17 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 23 C -0.07 -1.31 4.91 -104.62 -0.51 -1.83 16 24 C -0.11 -1.80 9.67 -39.58 -0.38 -2.18 16 25 C -0.12 -1.75 10.05 -39.58 -0.40 -2.15 16 26 C -0.13 -1.81 10.05 -39.58 -0.40 -2.20 16 27 C -0.13 -1.75 10.05 -39.58 -0.40 -2.15 16 28 C -0.11 -1.73 9.32 -39.58 -0.37 -2.10 16 29 C -0.12 -1.19 5.75 -24.74 -0.14 -1.33 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.43 8.08 -51.93 -0.42 0.01 16 33 H 0.06 0.58 7.80 -51.93 -0.41 0.17 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 1.06 7.68 -51.93 -0.40 0.66 16 36 H 0.06 0.73 7.74 -51.93 -0.40 0.33 16 37 H 0.09 0.96 8.01 -51.93 -0.42 0.54 16 38 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.40 6.38 8.60 -40.82 -0.35 6.03 16 40 H 0.02 0.50 7.20 -51.93 -0.37 0.12 16 41 H 0.03 0.64 7.57 -51.93 -0.39 0.25 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.12 1.94 8.04 -52.49 -0.42 1.52 16 44 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 45 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 46 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 47 H 0.12 1.70 7.72 -52.49 -0.41 1.30 16 48 H 0.07 0.64 7.98 -51.93 -0.41 0.23 16 49 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 391.85 15.07 5.91 5.91 Total: -1.00 -31.07 391.85 -10.70 -41.77 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -8.59 Total: 8.08 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: -3.98 Total: -22.36 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.55 Total: -38.52 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.08 Total: -11.06 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.67 Total: 16.17 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.07 -10.70 -41.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153748436.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.703 kcal (2) G-P(sol) polarization free energy of solvation -31.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds