Wall clock time and date at job start Tue Mar 31 2020 10:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 110.43270 * 2 1 4 4 C 1.54268 * 110.59832 * 237.38663 * 2 1 3 5 5 C 1.54087 * 106.62308 * 217.54404 * 4 2 1 6 6 C 1.54274 * 106.48993 * 0.17118 * 5 4 2 7 7 H 1.08995 * 110.48286 * 264.70240 * 6 5 4 8 8 C 1.52998 * 110.48251 * 142.19599 * 6 5 4 9 9 C 1.50705 * 109.47129 * 68.24397 * 8 6 5 10 10 O 1.21278 * 120.00031 * 359.97438 * 9 8 6 11 11 N 1.34780 * 120.00025 * 179.97438 * 9 8 6 12 12 C 1.46498 * 120.00026 * 179.97438 * 11 9 8 13 13 H 1.08996 * 109.46956 * 34.99996 * 12 11 9 14 14 C 1.53001 * 109.47080 * 155.00227 * 12 11 9 15 15 C 1.50699 * 109.46766 * 294.99754 * 14 12 11 16 16 H 1.08002 * 120.00341 * 0.02562 * 15 14 12 17 17 C 1.37876 * 119.99732 * 179.97438 * 15 14 12 18 18 N 1.31516 * 120.00190 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00341 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47077 * 89.99277 * 19 17 15 21 21 H 1.48496 * 109.47393 * 209.99921 * 19 17 15 22 22 H 1.48507 * 109.46811 * 330.00098 * 19 17 15 23 23 C 1.50701 * 109.47139 * 275.00165 * 12 11 9 24 24 C 1.38234 * 120.00243 * 139.99942 * 23 12 11 25 25 C 1.38234 * 120.00240 * 180.02562 * 24 23 12 26 26 C 1.38233 * 120.00037 * 0.26327 * 25 24 23 27 27 C 1.38238 * 119.99752 * 359.47832 * 26 25 24 28 28 C 1.38234 * 120.00005 * 0.52168 * 27 26 25 29 29 C 1.54885 * 104.31356 * 23.45548 * 6 5 4 30 30 H 1.08997 * 109.46640 * 297.45293 * 1 2 3 31 31 H 1.08999 * 109.47238 * 57.45466 * 1 2 3 32 32 H 1.09004 * 109.46710 * 177.45729 * 1 2 3 33 33 H 1.08999 * 110.03020 * 336.93623 * 4 2 1 34 34 H 1.09002 * 110.03446 * 98.32185 * 4 2 1 35 35 H 1.08998 * 110.16278 * 240.88114 * 5 4 2 36 36 H 1.08995 * 110.00737 * 119.37726 * 5 4 2 37 37 H 1.08997 * 109.47510 * 308.24051 * 8 6 5 38 38 H 1.09003 * 109.47280 * 188.23744 * 8 6 5 39 39 H 0.97007 * 119.99845 * 359.97438 * 11 9 8 40 40 H 1.08993 * 109.47392 * 54.99966 * 14 12 11 41 41 H 1.09001 * 109.46866 * 175.00052 * 14 12 11 42 42 H 0.96999 * 120.00724 * 180.02562 * 18 17 15 43 43 H 1.07999 * 119.99751 * 359.97438 * 24 23 12 44 44 H 1.08002 * 119.99744 * 179.97438 * 25 24 23 45 45 H 1.07998 * 120.00395 * 179.72811 * 26 25 24 46 46 H 1.07999 * 119.99924 * 180.23487 * 27 26 25 47 47 H 1.08001 * 120.00310 * 179.72165 * 28 27 26 48 48 H 1.08997 * 110.76168 * 80.43762 * 29 6 5 49 49 H 1.08997 * 110.75544 * 203.62849 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0215 0.0000 4 6 2.0728 -0.7783 -1.2164 5 6 3.3237 -1.5366 -0.7321 6 6 3.4921 -1.1940 0.7627 7 1 4.1900 -0.3663 0.8880 8 6 3.9719 -2.4200 1.5422 9 6 5.3828 -2.7553 1.1323 10 8 5.9487 -2.0804 0.2985 11 7 6.0158 -3.8051 1.6924 12 6 7.3872 -4.1314 1.2935 13 1 7.9330 -3.2116 1.0835 14 6 8.0814 -4.8890 2.4271 15 6 8.2190 -3.9849 3.6249 16 1 7.8480 -2.9715 3.5821 17 6 8.8176 -4.4518 4.7759 18 7 8.9381 -3.6628 5.8211 19 14 9.4587 -6.2048 4.8503 20 1 10.8732 -6.2341 4.3990 21 1 9.3739 -6.7041 6.2462 22 1 8.6386 -7.0698 3.9644 23 6 7.3594 -4.9925 0.0571 24 6 8.2853 -4.7879 -0.9487 25 6 8.2594 -5.5774 -2.0831 26 6 7.3042 -6.5680 -2.2141 27 6 6.3816 -6.7762 -1.2059 28 6 6.4075 -5.9867 -0.0715 29 6 2.0722 -0.7806 1.2231 30 1 -0.3632 0.4738 0.9119 31 1 -0.3634 0.5528 -0.8663 32 1 -0.3633 -1.0267 -0.0456 33 1 1.3221 -1.4832 -1.5737 34 1 2.3429 -0.0851 -2.0130 35 1 4.2007 -1.2102 -1.2910 36 1 3.1800 -2.6100 -0.8552 37 1 3.3199 -3.2662 1.3258 38 1 3.9454 -2.2047 2.6104 39 1 5.5633 -4.3447 2.3596 40 1 7.4880 -5.7623 2.6973 41 1 9.0701 -5.2091 2.0981 42 1 9.3596 -3.9911 6.6307 43 1 9.0284 -4.0106 -0.8486 44 1 8.9826 -5.4172 -2.8691 45 1 7.2812 -7.1820 -3.1023 46 1 5.6378 -7.5527 -1.3066 47 1 5.6839 -6.1463 0.7142 48 1 1.4595 -1.6596 1.4228 49 1 2.1229 -0.1389 2.1027 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153748436.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:14 Heat of formation + Delta-G solvation = -64.389329 kcal Electronic energy + Delta-G solvation = -26451.384928 eV Core-core repulsion = 22954.817650 eV Total energy + Delta-G solvation = -3496.567278 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.18032 -40.02012 -38.95498 -36.78676 -34.68062 -33.63941 -32.52914 -31.70758 -30.98557 -30.42092 -28.22654 -26.58854 -24.94653 -23.60134 -23.27495 -22.02369 -21.16049 -20.95280 -20.28647 -19.06128 -17.96037 -17.67371 -17.23028 -16.79447 -16.34871 -16.14811 -15.71889 -15.45808 -15.09725 -15.00539 -14.61480 -14.39623 -14.21357 -14.18835 -14.06667 -13.83153 -13.76775 -13.53109 -13.11762 -12.94050 -12.71719 -12.55248 -12.41560 -11.96152 -11.91896 -11.74261 -11.72943 -11.72196 -11.58066 -11.48077 -11.42976 -11.40020 -11.25241 -10.81041 -10.62327 -9.94232 -9.76381 -9.54011 -8.28689 -6.33503 0.49376 0.54919 1.36672 1.37850 1.48853 1.82282 2.34991 2.41205 2.96114 3.07150 3.64818 3.68202 3.81718 3.92612 4.02268 4.10499 4.19930 4.27379 4.31837 4.37034 4.41859 4.49067 4.58869 4.62188 4.70730 4.72698 4.75581 4.76936 4.78950 4.86570 4.90871 5.02207 5.05597 5.14170 5.16509 5.17777 5.19347 5.24410 5.28613 5.39143 5.45101 5.54127 5.54739 5.60148 5.63121 5.63763 5.65281 5.88929 6.17219 6.25507 6.71848 6.77741 7.30521 7.44666 8.87608 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.010599 B = 0.004016 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2641.146119 B = 6969.596294 C = 9006.377470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.097 4.097 3 H 0.066 0.934 4 C -0.116 4.116 5 C -0.110 4.110 6 C -0.075 4.075 7 H 0.052 0.948 8 C -0.126 4.126 9 C 0.505 3.495 10 O -0.585 6.585 11 N -0.702 5.702 12 C 0.204 3.796 13 H 0.051 0.949 14 C -0.004 4.004 15 C -0.519 4.519 16 H 0.031 0.969 17 C 0.012 3.988 18 N -0.947 5.947 19 Si 0.945 3.055 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.242 1.242 23 C -0.097 4.097 24 C -0.133 4.133 25 C -0.124 4.124 26 C -0.128 4.128 27 C -0.123 4.123 28 C -0.119 4.119 29 C -0.109 4.109 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.039 0.961 36 H 0.057 0.943 37 H 0.118 0.882 38 H 0.102 0.898 39 H 0.408 0.592 40 H 0.037 0.963 41 H 0.025 0.975 42 H 0.266 0.734 43 H 0.110 0.890 44 H 0.141 0.859 45 H 0.150 0.850 46 H 0.148 0.852 47 H 0.126 0.874 48 H 0.084 0.916 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.702 -3.322 -14.425 21.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.116 4.116 3 H 0.085 0.915 4 C -0.154 4.154 5 C -0.147 4.147 6 C -0.094 4.094 7 H 0.071 0.929 8 C -0.166 4.166 9 C 0.293 3.707 10 O -0.466 6.466 11 N -0.352 5.352 12 C 0.099 3.901 13 H 0.069 0.931 14 C -0.041 4.041 15 C -0.557 4.557 16 H 0.049 0.951 17 C -0.185 4.185 18 N -0.588 5.588 19 Si 0.768 3.232 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.165 1.165 23 C -0.099 4.099 24 C -0.152 4.152 25 C -0.142 4.142 26 C -0.146 4.146 27 C -0.140 4.140 28 C -0.137 4.137 29 C -0.146 4.146 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.136 0.864 38 H 0.120 0.880 39 H 0.244 0.756 40 H 0.056 0.944 41 H 0.044 0.956 42 H 0.075 0.925 43 H 0.128 0.872 44 H 0.159 0.841 45 H 0.168 0.832 46 H 0.166 0.834 47 H 0.144 0.856 48 H 0.102 0.898 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.241 -2.837 -14.829 21.454 hybrid contribution 0.994 -0.267 0.978 1.420 sum -14.247 -3.104 -13.851 20.112 Atomic orbital electron populations 1.21766 0.93594 1.02250 1.02010 1.21948 0.96434 0.98785 0.94418 0.91538 1.22255 0.96582 0.98851 0.97699 1.22098 0.97440 0.99841 0.95366 1.21680 0.97141 0.95795 0.94816 0.92942 1.21794 0.91394 1.00782 1.02611 1.21363 0.89644 0.79224 0.80477 1.90622 1.69258 1.51644 1.35078 1.45912 1.14699 1.31474 1.43074 1.19495 0.83237 0.95869 0.91504 0.93119 1.19716 0.96208 0.95843 0.92361 1.21192 1.38488 0.98802 0.97258 0.95058 1.25892 0.95629 1.01999 0.95021 1.70059 1.45655 1.38493 1.04551 0.85746 0.79452 0.80191 0.77771 1.19960 1.20973 1.16506 1.20388 0.96678 0.97114 0.95674 1.21171 0.99131 1.00302 0.94608 1.21370 0.99654 0.95856 0.97290 1.21475 0.95073 0.98213 0.99840 1.21449 0.99660 0.99565 0.93364 1.21098 0.98388 0.95260 0.98972 1.22619 0.93862 1.00499 0.97666 0.92177 0.92346 0.92076 0.90703 0.92385 0.94203 0.92385 0.86415 0.87955 0.75586 0.94430 0.95649 0.92514 0.87223 0.84099 0.83225 0.83438 0.85615 0.89771 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.15 71.98 0.66 -1.22 16 2 C -0.10 -1.72 3.45 -9.72 -0.03 -1.76 16 3 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 4 C -0.12 -2.28 6.38 31.39 0.20 -2.08 16 5 C -0.11 -2.79 5.50 31.39 0.17 -2.62 16 6 C -0.08 -1.92 2.46 -9.72 -0.02 -1.94 16 7 H 0.05 1.63 7.96 -2.39 -0.02 1.61 16 8 C -0.13 -3.25 5.09 29.85 0.15 -3.09 16 9 C 0.50 18.08 7.58 87.66 0.66 18.75 16 10 O -0.59 -25.50 14.55 -3.02 -0.04 -25.55 16 11 N -0.70 -25.45 4.03 -446.10 -1.80 -27.24 16 12 C 0.20 8.41 2.12 44.25 0.09 8.51 16 13 H 0.05 2.45 7.44 -2.39 -0.02 2.43 16 14 C 0.00 -0.16 3.56 29.85 0.11 -0.06 16 15 C -0.52 -28.87 9.39 25.60 0.24 -28.63 16 16 H 0.03 1.97 7.99 -2.91 -0.02 1.94 16 17 C 0.01 0.68 5.47 84.65 0.46 1.14 16 18 N -0.95 -58.20 13.96 21.45 0.30 -57.90 16 19 Si 0.94 42.91 27.47 68.60 1.88 44.80 16 20 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.24 -9.99 6.54 99.48 0.65 -9.34 16 23 C -0.10 -3.46 4.91 -19.86 -0.10 -3.56 16 24 C -0.13 -4.51 9.67 22.27 0.22 -4.29 16 25 C -0.12 -3.31 10.05 22.27 0.22 -3.09 16 26 C -0.13 -2.97 10.05 22.27 0.22 -2.75 16 27 C -0.12 -2.98 10.05 22.27 0.22 -2.76 16 28 C -0.12 -3.55 9.32 22.27 0.21 -3.34 16 29 C -0.11 -2.05 5.75 31.88 0.18 -1.87 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 0.76 8.08 -2.39 -0.02 0.74 16 33 H 0.07 1.26 7.80 -2.39 -0.02 1.24 16 34 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.04 1.25 7.68 -2.39 -0.02 1.23 16 36 H 0.06 1.44 7.74 -2.39 -0.02 1.42 16 37 H 0.12 2.33 8.01 -2.39 -0.02 2.31 16 38 H 0.10 2.46 8.14 -2.39 -0.02 2.45 16 39 H 0.41 13.10 8.60 -92.70 -0.80 12.30 16 40 H 0.04 1.60 7.20 -2.39 -0.02 1.58 16 41 H 0.03 1.16 7.57 -2.39 -0.02 1.14 16 42 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 43 H 0.11 3.78 8.04 -2.91 -0.02 3.76 16 44 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 45 H 0.15 2.42 8.06 -2.91 -0.02 2.39 16 46 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 47 H 0.13 3.41 7.72 -2.91 -0.02 3.38 16 48 H 0.08 1.34 7.98 -2.39 -0.02 1.32 16 49 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -71.41 391.85 4.27 -67.14 By element: Atomic # 1 Polarization: 33.36 SS G_CDS: 0.06 Total: 33.42 kcal Atomic # 6 Polarization: -38.54 SS G_CDS: 3.87 Total: -34.67 kcal Atomic # 7 Polarization: -83.65 SS G_CDS: -1.50 Total: -85.14 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.04 Total: -25.55 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.88 Total: 44.80 kcal Total: -71.41 4.27 -67.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153748436.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.751 kcal (2) G-P(sol) polarization free energy of solvation -71.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds