Wall clock time and date at job start Tue Mar 31 2020 10:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 110.43614 * 2 1 4 4 C 1.54269 * 110.48850 * 122.54493 * 2 1 3 5 5 C 1.53881 * 106.59554 * 142.28650 * 4 2 1 6 6 C 1.54263 * 106.60085 * 359.97438 * 5 4 2 7 7 H 1.09002 * 110.47940 * 95.19969 * 6 5 4 8 8 C 1.52999 * 110.48889 * 217.71040 * 6 5 4 9 9 C 1.50702 * 109.47098 * 293.55246 * 8 6 5 10 10 O 1.21285 * 120.00167 * 359.97438 * 9 8 6 11 11 N 1.34775 * 119.99953 * 179.97438 * 9 8 6 12 12 C 1.46500 * 119.99924 * 175.11079 * 11 9 8 13 13 H 1.09002 * 109.46958 * 328.53787 * 12 11 9 14 14 C 1.53001 * 109.47316 * 88.54238 * 12 11 9 15 15 C 1.50700 * 109.47137 * 185.78603 * 14 12 11 16 16 H 1.08000 * 119.99925 * 5.06599 * 15 14 12 17 17 C 1.37874 * 119.99937 * 185.05848 * 15 14 12 18 18 N 1.31512 * 119.99942 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00154 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46929 * 60.00618 * 19 17 15 21 21 H 1.48494 * 109.47405 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47268 * 300.00967 * 19 17 15 23 23 C 1.50703 * 109.47058 * 208.54310 * 12 11 9 24 24 C 1.38238 * 119.99561 * 319.72230 * 23 12 11 25 25 C 1.38243 * 119.99673 * 179.78948 * 24 23 12 26 26 C 1.38229 * 119.99916 * 0.46312 * 25 24 23 27 27 C 1.38236 * 120.00298 * 359.77544 * 26 25 24 28 28 C 1.38233 * 120.00391 * 140.00218 * 23 12 11 29 29 C 1.54887 * 104.19711 * 336.39282 * 6 5 4 30 30 H 1.09003 * 109.46446 * 298.90819 * 1 2 3 31 31 H 1.08998 * 109.47125 * 58.90720 * 1 2 3 32 32 H 1.08997 * 109.47013 * 178.91035 * 1 2 3 33 33 H 1.08993 * 110.03166 * 23.00246 * 4 2 1 34 34 H 1.08993 * 110.07185 * 261.59271 * 4 2 1 35 35 H 1.08997 * 110.02995 * 240.71195 * 5 4 2 36 36 H 1.08997 * 110.06827 * 119.30899 * 5 4 2 37 37 H 1.08993 * 109.47400 * 173.54669 * 8 6 5 38 38 H 1.09001 * 109.46599 * 53.54824 * 8 6 5 39 39 H 0.96999 * 119.99970 * 355.11051 * 11 9 8 40 40 H 1.09000 * 109.47002 * 305.78645 * 14 12 11 41 41 H 1.08997 * 109.46935 * 65.78109 * 14 12 11 42 42 H 0.96999 * 119.99830 * 179.97438 * 18 17 15 43 43 H 1.07996 * 120.00094 * 0.02562 * 24 23 12 44 44 H 1.08000 * 119.99953 * 180.25235 * 25 24 23 45 45 H 1.08003 * 119.99886 * 179.78414 * 26 25 24 46 46 H 1.08003 * 120.00451 * 180.02562 * 27 26 25 47 47 H 1.08000 * 119.99847 * 359.97249 * 28 23 12 48 48 H 1.09002 * 110.75729 * 156.25581 * 29 6 5 49 49 H 1.08997 * 110.75516 * 279.62380 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0215 0.0000 4 6 2.0700 -0.7774 1.2182 5 6 3.3166 -1.5397 0.7357 6 6 3.4903 -1.1994 -0.7588 7 1 4.1910 -0.3737 -0.8831 8 6 3.9688 -2.4276 -1.5356 9 6 5.3611 -2.7931 -1.0896 10 8 5.9163 -2.1356 -0.2349 11 7 5.9894 -3.8506 -1.6405 12 6 7.3806 -4.1422 -1.2859 13 1 7.9023 -3.2109 -1.0658 14 6 7.4136 -5.0489 -0.0539 15 6 8.8400 -5.2335 0.3958 16 1 9.6348 -4.6883 -0.0916 17 6 9.1305 -6.0984 1.4295 18 7 8.1628 -6.7626 2.0227 19 14 10.8987 -6.3279 1.9865 20 1 11.4465 -5.0256 2.4438 21 1 10.9427 -7.3040 3.1047 22 1 11.7126 -6.8367 0.8534 23 6 8.0578 -4.8369 -2.4392 24 6 7.3768 -5.7973 -3.1637 25 6 7.9966 -6.4314 -4.2243 26 6 9.3003 -6.1120 -4.5543 27 6 9.9829 -5.1552 -3.8267 28 6 9.3618 -4.5179 -2.7688 29 6 2.0716 -0.7843 -1.2213 30 1 -0.3632 0.4968 0.8997 31 1 -0.3633 0.5307 -0.8800 32 1 -0.3633 -1.0275 -0.0195 33 1 1.3177 -1.4803 1.5758 34 1 2.3411 -0.0840 2.0142 35 1 3.1693 -2.6125 0.8594 36 1 4.1932 -1.2163 1.2970 37 1 3.9761 -2.2029 -2.6021 38 1 3.2951 -3.2631 -1.3450 39 1 5.5204 -4.4185 -2.2717 40 1 6.8357 -4.5917 0.7492 41 1 6.9832 -6.0184 -0.3047 42 1 8.3672 -7.3714 2.7497 43 1 6.3594 -6.0494 -2.9035 44 1 7.4632 -7.1788 -4.7929 45 1 9.7857 -6.6099 -5.3807 46 1 11.0015 -4.9053 -4.0847 47 1 9.8951 -3.7705 -2.2002 48 1 2.1243 -0.1418 -2.1002 49 1 1.4576 -1.6627 -1.4199 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153748725.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:23 Heat of formation + Delta-G solvation = -48.262739 kcal Electronic energy + Delta-G solvation = -26226.888263 eV Core-core repulsion = 22731.020287 eV Total energy + Delta-G solvation = -3495.867976 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.82019 -38.87201 -37.87659 -35.06127 -32.84542 -32.54035 -31.08061 -30.42469 -29.52711 -28.59282 -27.19574 -24.92072 -23.85360 -22.35783 -22.06408 -20.67085 -20.10666 -19.54480 -19.28084 -17.15610 -16.49826 -16.18170 -15.83795 -15.23238 -14.82811 -14.68798 -14.46583 -14.24953 -13.92567 -13.65651 -13.38470 -13.11457 -13.04022 -12.91677 -12.69819 -12.51294 -12.18795 -12.04998 -11.81038 -11.47358 -11.11679 -11.01390 -10.86191 -10.83199 -10.75333 -10.71621 -10.62460 -10.60417 -10.51619 -10.25384 -9.95142 -9.94623 -9.39251 -9.03818 -8.47264 -8.46162 -8.32269 -8.00402 -5.97638 -3.98836 1.83727 1.86793 3.17160 3.35963 3.39638 3.42052 3.70120 4.29147 4.48939 4.55234 4.59260 4.71070 5.11468 5.19598 5.25026 5.28500 5.29637 5.38322 5.40587 5.40996 5.46780 5.53437 5.54213 5.57407 5.62439 5.71760 5.79452 5.88473 5.91025 5.93343 6.00410 6.05730 6.08715 6.20024 6.23414 6.35464 6.40630 6.51990 6.53588 6.60635 6.76776 6.86149 6.91171 6.93154 7.18855 7.44884 7.64888 7.72775 8.00304 8.09025 8.38729 8.78651 9.05063 9.63891 11.14005 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012172 B = 0.003493 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.770837 B = 8013.405326 C = 9747.405802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.072 0.928 4 C -0.122 4.122 5 C -0.115 4.115 6 C -0.073 4.073 7 H 0.080 0.920 8 C -0.134 4.134 9 C 0.508 3.492 10 O -0.533 6.533 11 N -0.726 5.726 12 C 0.180 3.820 13 H 0.086 0.914 14 C 0.026 3.974 15 C -0.512 4.512 16 H 0.056 0.944 17 C 0.060 3.940 18 N -0.895 5.895 19 Si 0.890 3.110 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.047 4.047 24 C -0.119 4.119 25 C -0.122 4.122 26 C -0.136 4.136 27 C -0.121 4.121 28 C -0.099 4.099 29 C -0.116 4.116 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.391 0.609 40 H 0.024 0.976 41 H 0.021 0.979 42 H 0.260 0.740 43 H 0.114 0.886 44 H 0.114 0.886 45 H 0.113 0.887 46 H 0.115 0.885 47 H 0.121 0.879 48 H 0.063 0.937 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.306 8.119 -11.621 18.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.090 0.910 4 C -0.159 4.159 5 C -0.153 4.153 6 C -0.092 4.092 7 H 0.099 0.901 8 C -0.174 4.174 9 C 0.293 3.707 10 O -0.409 6.409 11 N -0.377 5.377 12 C 0.077 3.923 13 H 0.104 0.896 14 C -0.012 4.012 15 C -0.550 4.550 16 H 0.075 0.925 17 C -0.141 4.141 18 N -0.534 5.534 19 Si 0.717 3.283 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.047 4.047 24 C -0.137 4.137 25 C -0.140 4.140 26 C -0.154 4.154 27 C -0.139 4.139 28 C -0.118 4.118 29 C -0.153 4.153 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.224 0.776 40 H 0.042 0.958 41 H 0.040 0.960 42 H 0.070 0.930 43 H 0.132 0.868 44 H 0.133 0.867 45 H 0.131 0.869 46 H 0.133 0.867 47 H 0.139 0.861 48 H 0.082 0.918 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.927 8.479 -10.852 17.580 hybrid contribution 0.845 -0.783 0.152 1.162 sum -10.082 7.696 -10.700 16.594 Atomic orbital electron populations 1.21806 0.95320 1.01669 1.01278 1.21958 0.95098 0.99280 0.95307 0.90990 1.22247 0.97593 0.98779 0.97299 1.22148 0.97743 0.99991 0.95384 1.21704 0.95936 0.96641 0.94947 0.90149 1.21767 0.94552 0.99725 1.01402 1.20549 0.87883 0.80381 0.81851 1.90706 1.67444 1.52237 1.30559 1.46303 1.14727 1.29752 1.46917 1.20299 0.79111 0.99412 0.93454 0.89558 1.19400 0.97751 0.93696 0.90313 1.21023 0.92461 1.24681 1.16885 0.92531 1.24938 0.96971 0.95767 0.96427 1.69951 1.31586 1.27815 1.24022 0.86691 0.85359 0.77967 0.78246 1.20175 1.21339 1.20238 1.19959 0.94606 0.95811 0.94341 1.20825 0.99971 0.96875 0.96058 1.20974 0.95329 0.99851 0.97843 1.20971 0.95080 0.98871 1.00455 1.21041 0.99406 0.97229 0.96246 1.20977 0.94443 1.00134 0.96201 1.22649 0.95822 0.99622 0.97250 0.92909 0.92949 0.92672 0.92073 0.92199 0.92138 0.90698 0.89420 0.89256 0.77554 0.95773 0.96019 0.93018 0.86769 0.86747 0.86902 0.86653 0.86127 0.91829 0.91367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.11 37.16 0.34 -0.81 16 2 C -0.10 -0.93 3.46 -88.94 -0.31 -1.24 16 3 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 4 C -0.12 -1.34 6.37 -25.61 -0.16 -1.50 16 5 C -0.12 -1.56 5.39 -25.61 -0.14 -1.70 16 6 C -0.07 -0.89 2.48 -88.96 -0.22 -1.11 16 7 H 0.08 1.08 8.02 -51.93 -0.42 0.67 16 8 C -0.13 -1.62 5.09 -27.88 -0.14 -1.76 16 9 C 0.51 8.64 7.60 -10.99 -0.08 8.56 16 10 O -0.53 -11.34 14.45 5.55 0.08 -11.26 16 11 N -0.73 -12.28 5.00 -54.93 -0.27 -12.56 16 12 C 0.18 3.73 2.21 -69.08 -0.15 3.58 16 13 H 0.09 1.94 7.40 -51.93 -0.38 1.56 16 14 C 0.03 0.68 4.74 -27.88 -0.13 0.55 16 15 C -0.51 -14.35 8.53 -34.44 -0.29 -14.64 16 16 H 0.06 1.53 6.79 -52.49 -0.36 1.17 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 18 N -0.89 -27.08 13.29 55.43 0.74 -26.34 16 19 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 C -0.05 -0.87 4.50 -104.62 -0.47 -1.34 16 24 C -0.12 -1.97 9.08 -39.58 -0.36 -2.33 16 25 C -0.12 -1.80 10.05 -39.58 -0.40 -2.20 16 26 C -0.14 -1.97 10.05 -39.59 -0.40 -2.37 16 27 C -0.12 -1.90 10.05 -39.58 -0.40 -2.29 16 28 C -0.10 -1.79 8.83 -39.58 -0.35 -2.14 16 29 C -0.12 -1.10 5.75 -24.72 -0.14 -1.24 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.64 7.84 -51.93 -0.41 0.23 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.87 7.77 -51.93 -0.40 0.46 16 36 H 0.07 1.21 7.60 -51.93 -0.39 0.81 16 37 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.09 0.95 8.05 -51.93 -0.42 0.54 16 39 H 0.39 5.39 6.90 -40.82 -0.28 5.11 16 40 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.02 0.59 8.13 -51.93 -0.42 0.17 16 42 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 43 H 0.11 1.69 6.89 -52.49 -0.36 1.33 16 44 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 45 H 0.11 1.33 8.06 -52.48 -0.42 0.90 16 46 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 47 H 0.12 2.14 7.85 -52.49 -0.41 1.73 16 48 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.07 0.60 7.97 -51.93 -0.41 0.19 16 LS Contribution 391.14 15.07 5.89 5.89 Total: -1.00 -32.68 391.14 -10.95 -43.62 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -8.46 Total: 5.98 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: -3.91 Total: -22.34 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.46 Total: -38.90 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.08 Total: -11.26 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.68 -10.95 -43.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153748725.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.639 kcal (2) G-P(sol) polarization free energy of solvation -32.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds