Wall clock time and date at job start Tue Mar 31 2020 10:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 110.43614 * 2 1 4 4 C 1.54269 * 110.48850 * 122.54493 * 2 1 3 5 5 C 1.53881 * 106.59554 * 142.28650 * 4 2 1 6 6 C 1.54263 * 106.60085 * 359.97438 * 5 4 2 7 7 H 1.09002 * 110.47940 * 95.19969 * 6 5 4 8 8 C 1.52999 * 110.48889 * 217.71040 * 6 5 4 9 9 C 1.50702 * 109.47098 * 293.55246 * 8 6 5 10 10 O 1.21285 * 120.00167 * 359.97438 * 9 8 6 11 11 N 1.34775 * 119.99953 * 179.97438 * 9 8 6 12 12 C 1.46500 * 119.99924 * 175.11079 * 11 9 8 13 13 H 1.09002 * 109.46958 * 328.53787 * 12 11 9 14 14 C 1.53001 * 109.47316 * 88.54238 * 12 11 9 15 15 C 1.50700 * 109.47137 * 185.78603 * 14 12 11 16 16 H 1.08000 * 119.99925 * 5.06599 * 15 14 12 17 17 C 1.37874 * 119.99937 * 185.05848 * 15 14 12 18 18 N 1.31512 * 119.99942 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00154 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46929 * 60.00618 * 19 17 15 21 21 H 1.48494 * 109.47405 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47268 * 300.00967 * 19 17 15 23 23 C 1.50703 * 109.47058 * 208.54310 * 12 11 9 24 24 C 1.38238 * 119.99561 * 319.72230 * 23 12 11 25 25 C 1.38243 * 119.99673 * 179.78948 * 24 23 12 26 26 C 1.38229 * 119.99916 * 0.46312 * 25 24 23 27 27 C 1.38236 * 120.00298 * 359.77544 * 26 25 24 28 28 C 1.38233 * 120.00391 * 140.00218 * 23 12 11 29 29 C 1.54887 * 104.19711 * 336.39282 * 6 5 4 30 30 H 1.09003 * 109.46446 * 298.90819 * 1 2 3 31 31 H 1.08998 * 109.47125 * 58.90720 * 1 2 3 32 32 H 1.08997 * 109.47013 * 178.91035 * 1 2 3 33 33 H 1.08993 * 110.03166 * 23.00246 * 4 2 1 34 34 H 1.08993 * 110.07185 * 261.59271 * 4 2 1 35 35 H 1.08997 * 110.02995 * 240.71195 * 5 4 2 36 36 H 1.08997 * 110.06827 * 119.30899 * 5 4 2 37 37 H 1.08993 * 109.47400 * 173.54669 * 8 6 5 38 38 H 1.09001 * 109.46599 * 53.54824 * 8 6 5 39 39 H 0.96999 * 119.99970 * 355.11051 * 11 9 8 40 40 H 1.09000 * 109.47002 * 305.78645 * 14 12 11 41 41 H 1.08997 * 109.46935 * 65.78109 * 14 12 11 42 42 H 0.96999 * 119.99830 * 179.97438 * 18 17 15 43 43 H 1.07996 * 120.00094 * 0.02562 * 24 23 12 44 44 H 1.08000 * 119.99953 * 180.25235 * 25 24 23 45 45 H 1.08003 * 119.99886 * 179.78414 * 26 25 24 46 46 H 1.08003 * 120.00451 * 180.02562 * 27 26 25 47 47 H 1.08000 * 119.99847 * 359.97249 * 28 23 12 48 48 H 1.09002 * 110.75729 * 156.25581 * 29 6 5 49 49 H 1.08997 * 110.75516 * 279.62380 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0215 0.0000 4 6 2.0700 -0.7774 1.2182 5 6 3.3166 -1.5397 0.7357 6 6 3.4903 -1.1994 -0.7588 7 1 4.1910 -0.3737 -0.8831 8 6 3.9688 -2.4276 -1.5356 9 6 5.3611 -2.7931 -1.0896 10 8 5.9163 -2.1356 -0.2349 11 7 5.9894 -3.8506 -1.6405 12 6 7.3806 -4.1422 -1.2859 13 1 7.9023 -3.2109 -1.0658 14 6 7.4136 -5.0489 -0.0539 15 6 8.8400 -5.2335 0.3958 16 1 9.6348 -4.6883 -0.0916 17 6 9.1305 -6.0984 1.4295 18 7 8.1628 -6.7626 2.0227 19 14 10.8987 -6.3279 1.9865 20 1 11.4465 -5.0256 2.4438 21 1 10.9427 -7.3040 3.1047 22 1 11.7126 -6.8367 0.8534 23 6 8.0578 -4.8369 -2.4392 24 6 7.3768 -5.7973 -3.1637 25 6 7.9966 -6.4314 -4.2243 26 6 9.3003 -6.1120 -4.5543 27 6 9.9829 -5.1552 -3.8267 28 6 9.3618 -4.5179 -2.7688 29 6 2.0716 -0.7843 -1.2213 30 1 -0.3632 0.4968 0.8997 31 1 -0.3633 0.5307 -0.8800 32 1 -0.3633 -1.0275 -0.0195 33 1 1.3177 -1.4803 1.5758 34 1 2.3411 -0.0840 2.0142 35 1 3.1693 -2.6125 0.8594 36 1 4.1932 -1.2163 1.2970 37 1 3.9761 -2.2029 -2.6021 38 1 3.2951 -3.2631 -1.3450 39 1 5.5204 -4.4185 -2.2717 40 1 6.8357 -4.5917 0.7492 41 1 6.9832 -6.0184 -0.3047 42 1 8.3672 -7.3714 2.7497 43 1 6.3594 -6.0494 -2.9035 44 1 7.4632 -7.1788 -4.7929 45 1 9.7857 -6.6099 -5.3807 46 1 11.0015 -4.9053 -4.0847 47 1 9.8951 -3.7705 -2.2002 48 1 2.1243 -0.1418 -2.1002 49 1 1.4576 -1.6627 -1.4199 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153748725.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:22 Heat of formation + Delta-G solvation = -66.026816 kcal Electronic energy + Delta-G solvation = -26227.658571 eV Core-core repulsion = 22731.020287 eV Total energy + Delta-G solvation = -3496.638285 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.19502 -40.07084 -38.98818 -36.65475 -34.86042 -33.63277 -32.50588 -31.66545 -30.53861 -30.30061 -28.24207 -26.53618 -24.95383 -23.93894 -23.49928 -21.96473 -21.08626 -20.94413 -20.35939 -18.71612 -18.26514 -17.28523 -17.15053 -16.69607 -16.56271 -15.95508 -15.90710 -15.43546 -15.08432 -14.90897 -14.61860 -14.31762 -14.21361 -14.17796 -14.14896 -13.83464 -13.76287 -13.14746 -13.03278 -12.90744 -12.71869 -12.67583 -12.53184 -11.97271 -11.96024 -11.86712 -11.73737 -11.65289 -11.56227 -11.48444 -11.43277 -11.36897 -11.25942 -10.65255 -10.57197 -9.97015 -9.70334 -9.44236 -8.21109 -6.29915 0.56050 0.61022 1.35375 1.39001 1.45958 1.78726 2.29972 2.44691 3.00949 3.13376 3.63757 3.67680 3.81222 3.88827 4.02248 4.09239 4.24797 4.27009 4.35040 4.38169 4.47245 4.49845 4.62073 4.70121 4.73354 4.77462 4.78762 4.82515 4.84786 4.85685 4.91544 5.05753 5.14994 5.16706 5.18705 5.22920 5.24834 5.33988 5.40000 5.44867 5.46949 5.53977 5.56809 5.63424 5.66315 5.69302 5.74146 5.91165 6.20483 6.23282 6.70329 6.82076 7.36991 7.42904 8.91053 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012172 B = 0.003493 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.770837 B = 8013.405326 C = 9747.405802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.096 4.096 3 H 0.071 0.929 4 C -0.119 4.119 5 C -0.118 4.118 6 C -0.074 4.074 7 H 0.061 0.939 8 C -0.122 4.122 9 C 0.498 3.502 10 O -0.585 6.585 11 N -0.717 5.717 12 C 0.197 3.803 13 H 0.057 0.943 14 C 0.041 3.959 15 C -0.525 4.525 16 H 0.060 0.940 17 C 0.003 3.997 18 N -0.932 5.932 19 Si 0.957 3.043 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.263 1.263 23 C -0.072 4.072 24 C -0.128 4.128 25 C -0.119 4.119 26 C -0.129 4.129 27 C -0.124 4.124 28 C -0.124 4.124 29 C -0.104 4.104 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.047 0.953 36 H 0.034 0.966 37 H 0.124 0.876 38 H 0.111 0.889 39 H 0.408 0.592 40 H -0.024 1.024 41 H 0.002 0.998 42 H 0.262 0.738 43 H 0.126 0.874 44 H 0.150 0.850 45 H 0.150 0.850 46 H 0.140 0.860 47 H 0.108 0.892 48 H 0.082 0.918 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.866 7.375 -14.738 20.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.115 4.115 3 H 0.089 0.911 4 C -0.157 4.157 5 C -0.156 4.156 6 C -0.093 4.093 7 H 0.080 0.920 8 C -0.162 4.162 9 C 0.287 3.713 10 O -0.464 6.464 11 N -0.369 5.369 12 C 0.093 3.907 13 H 0.075 0.925 14 C 0.003 3.997 15 C -0.564 4.564 16 H 0.078 0.922 17 C -0.194 4.194 18 N -0.573 5.573 19 Si 0.782 3.218 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.188 1.188 23 C -0.073 4.073 24 C -0.147 4.147 25 C -0.137 4.137 26 C -0.147 4.147 27 C -0.142 4.142 28 C -0.143 4.143 29 C -0.142 4.142 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.142 0.858 38 H 0.129 0.871 39 H 0.246 0.754 40 H -0.006 1.006 41 H 0.020 0.980 42 H 0.071 0.929 43 H 0.144 0.856 44 H 0.167 0.833 45 H 0.168 0.832 46 H 0.158 0.842 47 H 0.126 0.874 48 H 0.100 0.900 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.510 7.729 -14.008 19.709 hybrid contribution 1.041 -0.561 1.118 1.627 sum -10.469 7.168 -12.890 18.087 Atomic orbital electron populations 1.21771 0.93658 1.02155 1.02082 1.21963 0.96394 0.98887 0.94239 0.91058 1.22236 0.96464 0.98796 0.98183 1.22120 0.97454 0.99387 0.96628 1.21701 0.97655 0.96109 0.93862 0.92015 1.21815 0.90833 1.00328 1.03213 1.21613 0.89541 0.79448 0.80727 1.90688 1.69073 1.53829 1.32845 1.46170 1.13511 1.30215 1.47039 1.19675 0.81293 0.96961 0.92796 0.92522 1.19142 0.96008 0.93218 0.91315 1.21408 0.93542 1.24436 1.16981 0.92152 1.25864 1.01550 0.95502 0.96521 1.70090 1.33915 1.28617 1.24647 0.85612 0.79951 0.78087 0.78151 1.19643 1.20749 1.18790 1.19812 0.95307 0.97512 0.94677 1.21048 1.00683 0.96429 0.96513 1.21403 0.95666 0.99652 0.96938 1.21453 0.94919 0.97732 1.00615 1.21362 1.00608 0.96977 0.95250 1.21078 0.94486 1.01041 0.97704 1.22614 0.93404 1.00461 0.97685 0.92678 0.91620 0.92349 0.91290 0.92661 0.93455 0.94725 0.85824 0.87085 0.75445 1.00571 0.97991 0.92927 0.85614 0.83259 0.83207 0.84171 0.87404 0.89983 0.89868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.11 71.98 0.66 -1.22 16 2 C -0.10 -1.68 3.46 -9.71 -0.03 -1.72 16 3 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 4 C -0.12 -2.66 6.37 31.32 0.20 -2.46 16 5 C -0.12 -3.42 5.39 31.32 0.17 -3.25 16 6 C -0.07 -1.80 2.48 -9.72 -0.02 -1.83 16 7 H 0.06 1.73 8.02 -2.39 -0.02 1.71 16 8 C -0.12 -2.84 5.09 29.85 0.15 -2.68 16 9 C 0.50 17.80 7.60 87.66 0.67 18.46 16 10 O -0.58 -27.06 14.45 -3.05 -0.04 -27.11 16 11 N -0.72 -25.24 5.00 -446.08 -2.23 -27.47 16 12 C 0.20 8.68 2.21 44.25 0.10 8.78 16 13 H 0.06 2.79 7.40 -2.39 -0.02 2.77 16 14 C 0.04 2.27 4.74 29.85 0.14 2.42 16 15 C -0.53 -30.80 8.53 25.60 0.22 -30.58 16 16 H 0.06 3.41 6.79 -2.91 -0.02 3.39 16 17 C 0.00 0.20 5.46 84.65 0.46 0.66 16 18 N -0.93 -58.48 13.29 21.45 0.28 -58.20 16 19 Si 0.96 46.00 29.54 68.60 2.03 48.03 16 20 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 21 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 22 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 23 C -0.07 -2.76 4.50 -19.86 -0.09 -2.85 16 24 C -0.13 -4.10 9.08 22.27 0.20 -3.90 16 25 C -0.12 -3.12 10.05 22.27 0.22 -2.90 16 26 C -0.13 -3.28 10.05 22.27 0.22 -3.06 16 27 C -0.12 -3.63 10.05 22.27 0.22 -3.40 16 28 C -0.12 -4.53 8.83 22.27 0.20 -4.34 16 29 C -0.10 -1.73 5.75 31.89 0.18 -1.55 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.07 1.42 7.84 -2.39 -0.02 1.40 16 34 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.05 1.45 7.77 -2.39 -0.02 1.43 16 36 H 0.03 1.24 7.60 -2.39 -0.02 1.23 16 37 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.11 2.16 8.05 -2.39 -0.02 2.14 16 39 H 0.41 11.19 6.90 -92.71 -0.64 10.55 16 40 H -0.02 -1.53 8.14 -2.39 -0.02 -1.55 16 41 H 0.00 0.10 8.13 -2.39 -0.02 0.08 16 42 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 43 H 0.13 3.57 6.89 -2.91 -0.02 3.55 16 44 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 45 H 0.15 2.71 8.06 -2.91 -0.02 2.68 16 46 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 47 H 0.11 4.04 7.85 -2.91 -0.02 4.02 16 48 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.08 1.18 7.97 -2.39 -0.02 1.16 16 Total: -1.00 -77.00 391.14 4.18 -72.82 By element: Atomic # 1 Polarization: 27.08 SS G_CDS: 0.27 Total: 27.35 kcal Atomic # 6 Polarization: -39.29 SS G_CDS: 3.87 Total: -35.42 kcal Atomic # 7 Polarization: -83.72 SS G_CDS: -1.95 Total: -85.67 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.04 Total: -27.11 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -77.00 4.18 -72.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153748725.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.792 kcal (2) G-P(sol) polarization free energy of solvation -76.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds