Wall clock time and date at job start Tue Mar 31 2020 11:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47219 * 2 1 4 4 C 1.37090 * 119.99804 * 269.21960 * 3 2 1 5 5 H 1.08005 * 119.99965 * 191.26320 * 4 3 2 6 6 C 1.38956 * 120.00237 * 11.26078 * 4 3 2 7 7 N 1.31410 * 119.99786 * 8.92232 * 6 4 3 8 8 Si 1.86799 * 120.00062 * 188.91892 * 6 4 3 9 9 H 1.48501 * 109.47055 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47014 * 120.00072 * 8 6 4 11 11 H 1.48494 * 109.47312 * 240.00021 * 8 6 4 12 12 C 1.34777 * 119.99780 * 89.49135 * 3 2 1 13 13 O 1.21298 * 119.99509 * 184.95493 * 12 3 2 14 14 C 1.50693 * 120.00394 * 4.95941 * 12 3 2 15 15 C 1.50696 * 115.55272 * 271.33957 * 14 12 3 16 16 C 1.38231 * 119.99985 * 150.12732 * 15 14 12 17 17 C 1.38241 * 119.99995 * 179.76366 * 16 15 14 18 18 C 1.38236 * 119.99488 * 0.49517 * 17 16 15 19 19 C 1.50704 * 119.99772 * 179.76568 * 18 17 16 20 20 C 1.52995 * 109.46896 * 240.01485 * 19 18 17 21 21 C 1.53004 * 109.47153 * 0.02562 * 19 18 17 22 22 C 1.53005 * 109.47146 * 120.01217 * 19 18 17 23 23 C 1.38231 * 120.00427 * 359.77876 * 18 17 16 24 24 C 1.38235 * 119.99955 * 359.96287 * 23 18 17 25 25 C 1.53002 * 117.49853 * 125.62628 * 14 12 3 26 26 C 1.52996 * 60.00517 * 252.51276 * 25 14 12 27 27 H 1.09005 * 109.47013 * 300.00356 * 1 2 3 28 28 H 1.09001 * 109.47039 * 60.00372 * 1 2 3 29 29 H 1.08997 * 109.46825 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47488 * 239.99818 * 2 1 3 31 31 H 1.09001 * 109.47039 * 119.99628 * 2 1 3 32 32 H 0.96993 * 119.99585 * 179.97438 * 7 6 4 33 33 H 1.07997 * 120.00436 * 359.97438 * 16 15 14 34 34 H 1.08003 * 120.00103 * 180.24744 * 17 16 15 35 35 H 1.08997 * 109.47204 * 60.00570 * 20 19 18 36 36 H 1.09006 * 109.46829 * 180.02562 * 20 19 18 37 37 H 1.08995 * 109.47123 * 299.99544 * 20 19 18 38 38 H 1.09001 * 109.46887 * 59.99952 * 21 19 18 39 39 H 1.08998 * 109.47309 * 180.02562 * 21 19 18 40 40 H 1.08999 * 109.46697 * 300.00297 * 21 19 18 41 41 H 1.09003 * 109.46678 * 60.00080 * 22 19 18 42 42 H 1.08996 * 109.47010 * 179.97438 * 22 19 18 43 43 H 1.08993 * 109.47335 * 300.00107 * 22 19 18 44 44 H 1.07999 * 120.00274 * 179.97438 * 23 18 17 45 45 H 1.07996 * 120.00494 * 179.97438 * 24 23 18 46 46 H 1.09000 * 117.49851 * 0.02562 * 25 14 12 47 47 H 1.09006 * 117.49866 * 145.02281 * 25 14 12 48 48 H 1.08990 * 117.50031 * 252.51162 * 26 25 14 49 49 H 1.09005 * 117.49456 * 107.48686 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2621 2.0220 -1.1871 5 1 2.7893 2.9647 -1.1937 6 6 1.8309 1.4588 -2.3820 7 7 1.0414 0.4085 -2.3661 8 14 2.3736 2.1948 -4.0109 9 1 3.2544 3.3632 -3.7572 10 1 3.1184 1.1744 -4.7915 11 1 1.1801 2.6315 -4.7789 12 6 2.2332 2.0200 1.1672 13 8 2.5509 3.1906 1.1683 14 6 2.0789 1.2799 2.4708 15 6 0.6936 1.2898 3.0639 16 6 0.2652 0.2271 3.8371 17 6 -1.0039 0.2385 4.3852 18 6 -1.8480 1.3079 4.1516 19 6 -3.2334 1.3180 4.7447 20 6 -4.2688 1.3917 3.6208 21 6 -3.4504 0.0385 5.5553 22 6 -3.3872 2.5339 5.6607 23 6 -1.4216 2.3681 3.3737 24 6 -0.1507 2.3591 2.8300 25 6 3.2629 1.3011 3.4396 26 6 2.9249 0.0210 2.6729 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.7402 0.0156 -3.2002 33 1 0.9230 -0.6105 4.0158 34 1 -1.3372 -0.5900 4.9926 35 1 -4.1592 0.5255 2.9684 36 1 -5.2708 1.3994 4.0499 37 1 -4.1141 2.3033 3.0436 38 1 -2.7126 -0.0138 6.3560 39 1 -4.4525 0.0455 5.9839 40 1 -3.3406 -0.8278 4.9029 41 1 -3.2325 3.4454 5.0833 42 1 -4.3893 2.5413 6.0893 43 1 -2.6496 2.4813 6.4613 44 1 -2.0812 3.2034 3.1909 45 1 0.1824 3.1872 2.2219 46 1 4.1533 1.8508 3.1343 47 1 3.0400 1.3226 4.5064 48 1 2.4796 -0.7996 3.2351 49 1 3.5931 -0.2717 1.8629 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154978126.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:25 Heat of formation + Delta-G solvation = 22.672558 kcal Electronic energy + Delta-G solvation = -27717.920964 eV Core-core repulsion = 24225.128973 eV Total energy + Delta-G solvation = -3492.791991 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.16653 -38.84850 -36.72243 -35.25505 -34.87421 -31.54788 -30.80602 -29.52876 -29.22891 -27.40274 -27.26978 -25.52017 -23.82047 -22.62206 -21.92244 -21.85379 -21.05909 -19.16436 -18.41517 -16.98520 -16.51600 -15.77878 -15.08397 -14.97158 -14.55366 -14.32982 -14.25620 -14.05704 -13.53389 -13.43958 -13.35168 -12.90029 -12.77227 -12.61812 -12.56345 -12.09884 -12.02620 -11.73533 -11.65745 -11.56895 -11.36708 -11.16326 -11.12313 -11.01187 -10.93722 -10.60257 -10.58191 -10.41966 -10.31057 -10.18822 -10.11545 -9.92066 -9.59882 -8.83160 -8.53556 -8.29926 -7.98198 -7.65190 -6.19357 -3.80104 1.65550 1.78437 3.14510 3.25858 3.32622 3.85735 3.90175 4.10942 4.38451 4.62688 4.76071 4.85106 4.96975 4.98142 5.11005 5.27489 5.32407 5.32875 5.38085 5.49961 5.56688 5.57384 5.69591 5.70789 5.75484 5.81512 5.83076 5.93719 5.96354 6.01044 6.02683 6.18069 6.20157 6.27524 6.29310 6.39920 6.44026 6.46196 6.49665 6.80303 6.83971 6.90900 6.93305 6.99511 7.08119 7.36380 7.45048 7.60298 7.90977 8.13810 8.57941 9.21538 9.49597 10.04279 10.71167 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.016044 B = 0.004211 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.742527 B = 6647.417714 C = 7364.698779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.118 3.882 3 N -0.432 5.432 4 C -0.296 4.296 5 H 0.101 0.899 6 C 0.024 3.976 7 N -0.875 5.875 8 Si 0.927 3.073 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.282 1.282 12 C 0.478 3.522 13 O -0.592 6.592 14 C -0.095 4.095 15 C -0.022 4.022 16 C -0.119 4.119 17 C -0.122 4.122 18 C -0.082 4.082 19 C -0.027 4.027 20 C -0.139 4.139 21 C -0.142 4.142 22 C -0.137 4.137 23 C -0.113 4.113 24 C -0.096 4.096 25 C -0.145 4.145 26 C -0.167 4.167 27 H 0.024 0.976 28 H 0.089 0.911 29 H 0.029 0.971 30 H 0.105 0.895 31 H 0.038 0.962 32 H 0.263 0.737 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.116 0.884 45 H 0.126 0.874 46 H 0.098 0.902 47 H 0.095 0.905 48 H 0.098 0.902 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.132 -4.237 13.296 15.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.005 4.005 3 N -0.149 5.149 4 C -0.424 4.424 5 H 0.119 0.881 6 C -0.177 4.177 7 N -0.516 5.516 8 Si 0.754 3.246 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.208 1.208 12 C 0.265 3.735 13 O -0.477 6.477 14 C -0.099 4.099 15 C -0.023 4.023 16 C -0.137 4.137 17 C -0.140 4.140 18 C -0.082 4.082 19 C -0.027 4.027 20 C -0.196 4.196 21 C -0.199 4.199 22 C -0.195 4.195 23 C -0.131 4.131 24 C -0.114 4.114 25 C -0.183 4.183 26 C -0.204 4.204 27 H 0.043 0.957 28 H 0.108 0.892 29 H 0.048 0.952 30 H 0.123 0.877 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.134 0.866 45 H 0.144 0.856 46 H 0.117 0.883 47 H 0.113 0.887 48 H 0.117 0.883 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.068 -3.792 13.092 15.354 hybrid contribution 0.094 0.133 -0.960 0.973 sum -6.974 -3.659 12.133 14.465 Atomic orbital electron populations 1.22153 0.96724 0.99244 1.01781 1.21674 0.94751 0.83241 1.00839 1.43753 1.54959 1.11941 1.04227 1.19851 1.33678 1.06458 0.82368 0.88089 1.25271 0.95981 0.96881 0.99597 1.70152 1.32240 1.22466 1.26754 0.85833 0.78460 0.78917 0.81347 1.19390 1.20746 1.20820 1.18716 0.84939 0.86622 0.83247 1.90509 1.54235 1.16254 1.86727 1.20075 0.90411 1.02135 0.97231 1.18782 0.92992 0.94212 0.96269 1.20955 0.96282 0.98022 0.98470 1.20983 0.93762 0.98295 1.00969 1.19673 0.94995 0.94905 0.98602 1.19449 0.92113 0.95968 0.95178 1.21889 0.97497 1.02455 0.97750 1.21945 1.01281 0.96960 0.99728 1.21883 1.01244 0.97168 0.99168 1.20871 0.95851 0.98264 0.98089 1.21108 0.93282 0.98392 0.98610 1.22994 0.98198 1.00282 0.96810 1.23149 1.02857 0.91297 1.03104 0.95748 0.89238 0.95208 0.87739 0.94387 0.92568 0.86243 0.86105 0.92372 0.92707 0.92361 0.92381 0.92711 0.92249 0.92406 0.92688 0.92597 0.86587 0.85583 0.88310 0.88708 0.88345 0.88073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 9.60 37.16 0.36 -2.81 16 2 C 0.12 2.72 5.17 -4.04 -0.02 2.69 16 3 N -0.43 -11.08 2.62 -114.81 -0.30 -11.38 16 4 C -0.30 -8.19 9.49 -14.93 -0.14 -8.33 16 5 H 0.10 2.96 7.27 -52.48 -0.38 2.57 16 6 C 0.02 0.62 5.25 -17.47 -0.09 0.53 16 7 N -0.87 -22.37 7.57 55.50 0.42 -21.95 16 8 Si 0.93 20.65 29.56 -169.99 -5.03 15.63 16 9 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 C 0.48 11.85 5.68 -10.99 -0.06 11.79 16 13 O -0.59 -16.73 16.44 5.54 0.09 -16.64 16 14 C -0.10 -1.86 1.50 -156.81 -0.24 -2.10 16 15 C -0.02 -0.40 4.14 -104.63 -0.43 -0.83 16 16 C -0.12 -1.82 9.36 -39.58 -0.37 -2.19 16 17 C -0.12 -1.68 8.98 -39.58 -0.36 -2.03 16 18 C -0.08 -1.13 4.76 -104.62 -0.50 -1.63 16 19 C -0.03 -0.30 0.85 -155.66 -0.13 -0.43 16 20 C -0.14 -1.49 8.29 37.15 0.31 -1.18 16 21 C -0.14 -1.33 7.13 37.16 0.27 -1.06 16 22 C -0.14 -1.37 8.29 37.16 0.31 -1.06 16 23 C -0.11 -1.78 8.71 -39.59 -0.34 -2.12 16 24 C -0.10 -1.81 8.75 -39.58 -0.35 -2.15 16 25 C -0.15 -2.42 9.90 -26.73 -0.26 -2.69 16 26 C -0.17 -2.71 7.31 -26.73 -0.20 -2.91 16 27 H 0.02 0.53 6.06 -51.93 -0.31 0.21 16 28 H 0.09 2.27 6.08 -51.93 -0.32 1.95 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.10 2.60 5.88 -51.93 -0.31 2.29 16 31 H 0.04 0.78 4.47 -51.93 -0.23 0.55 16 32 H 0.26 6.42 8.31 -40.82 -0.34 6.08 16 33 H 0.12 1.59 5.95 -52.49 -0.31 1.28 16 34 H 0.12 1.37 5.90 -52.48 -0.31 1.06 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.65 7.39 -51.93 -0.38 0.27 16 38 H 0.06 0.52 7.51 -51.93 -0.39 0.13 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.56 7.51 -51.93 -0.39 0.17 16 41 H 0.06 0.59 7.39 -51.93 -0.38 0.21 16 42 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.12 1.65 7.10 -52.49 -0.37 1.28 16 45 H 0.13 2.72 7.12 -52.49 -0.37 2.34 16 46 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 47 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 48 H 0.10 1.33 6.10 -51.93 -0.32 1.02 16 49 H 0.10 1.71 7.71 -51.93 -0.40 1.31 16 LS Contribution 373.54 15.07 5.63 5.63 Total: -1.00 -29.72 373.54 -9.14 -38.86 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -7.70 Total: 8.36 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: -2.26 Total: -18.51 kcal Atomic # 7 Polarization: -33.45 SS G_CDS: 0.12 Total: -33.33 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: 0.09 Total: -16.64 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.72 -9.14 -38.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154978126.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.537 kcal (2) G-P(sol) polarization free energy of solvation -29.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds