Wall clock time and date at job start Tue Mar 31 2020 11:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47219 * 2 1 4 4 C 1.37090 * 119.99804 * 269.21960 * 3 2 1 5 5 H 1.08005 * 119.99965 * 191.26320 * 4 3 2 6 6 C 1.38956 * 120.00237 * 11.26078 * 4 3 2 7 7 N 1.31410 * 119.99786 * 8.92232 * 6 4 3 8 8 Si 1.86799 * 120.00062 * 188.91892 * 6 4 3 9 9 H 1.48501 * 109.47055 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47014 * 120.00072 * 8 6 4 11 11 H 1.48494 * 109.47312 * 240.00021 * 8 6 4 12 12 C 1.34777 * 119.99780 * 89.49135 * 3 2 1 13 13 O 1.21298 * 119.99509 * 184.95493 * 12 3 2 14 14 C 1.50693 * 120.00394 * 4.95941 * 12 3 2 15 15 C 1.50696 * 115.55272 * 271.33957 * 14 12 3 16 16 C 1.38231 * 119.99985 * 150.12732 * 15 14 12 17 17 C 1.38241 * 119.99995 * 179.76366 * 16 15 14 18 18 C 1.38236 * 119.99488 * 0.49517 * 17 16 15 19 19 C 1.50704 * 119.99772 * 179.76568 * 18 17 16 20 20 C 1.52995 * 109.46896 * 240.01485 * 19 18 17 21 21 C 1.53004 * 109.47153 * 0.02562 * 19 18 17 22 22 C 1.53005 * 109.47146 * 120.01217 * 19 18 17 23 23 C 1.38231 * 120.00427 * 359.77876 * 18 17 16 24 24 C 1.38235 * 119.99955 * 359.96287 * 23 18 17 25 25 C 1.53002 * 117.49853 * 125.62628 * 14 12 3 26 26 C 1.52996 * 60.00517 * 252.51276 * 25 14 12 27 27 H 1.09005 * 109.47013 * 300.00356 * 1 2 3 28 28 H 1.09001 * 109.47039 * 60.00372 * 1 2 3 29 29 H 1.08997 * 109.46825 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47488 * 239.99818 * 2 1 3 31 31 H 1.09001 * 109.47039 * 119.99628 * 2 1 3 32 32 H 0.96993 * 119.99585 * 179.97438 * 7 6 4 33 33 H 1.07997 * 120.00436 * 359.97438 * 16 15 14 34 34 H 1.08003 * 120.00103 * 180.24744 * 17 16 15 35 35 H 1.08997 * 109.47204 * 60.00570 * 20 19 18 36 36 H 1.09006 * 109.46829 * 180.02562 * 20 19 18 37 37 H 1.08995 * 109.47123 * 299.99544 * 20 19 18 38 38 H 1.09001 * 109.46887 * 59.99952 * 21 19 18 39 39 H 1.08998 * 109.47309 * 180.02562 * 21 19 18 40 40 H 1.08999 * 109.46697 * 300.00297 * 21 19 18 41 41 H 1.09003 * 109.46678 * 60.00080 * 22 19 18 42 42 H 1.08996 * 109.47010 * 179.97438 * 22 19 18 43 43 H 1.08993 * 109.47335 * 300.00107 * 22 19 18 44 44 H 1.07999 * 120.00274 * 179.97438 * 23 18 17 45 45 H 1.07996 * 120.00494 * 179.97438 * 24 23 18 46 46 H 1.09000 * 117.49851 * 0.02562 * 25 14 12 47 47 H 1.09006 * 117.49866 * 145.02281 * 25 14 12 48 48 H 1.08990 * 117.50031 * 252.51162 * 26 25 14 49 49 H 1.09005 * 117.49456 * 107.48686 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2621 2.0220 -1.1871 5 1 2.7893 2.9647 -1.1937 6 6 1.8309 1.4588 -2.3820 7 7 1.0414 0.4085 -2.3661 8 14 2.3736 2.1948 -4.0109 9 1 3.2544 3.3632 -3.7572 10 1 3.1184 1.1744 -4.7915 11 1 1.1801 2.6315 -4.7789 12 6 2.2332 2.0200 1.1672 13 8 2.5509 3.1906 1.1683 14 6 2.0789 1.2799 2.4708 15 6 0.6936 1.2898 3.0639 16 6 0.2652 0.2271 3.8371 17 6 -1.0039 0.2385 4.3852 18 6 -1.8480 1.3079 4.1516 19 6 -3.2334 1.3180 4.7447 20 6 -4.2688 1.3917 3.6208 21 6 -3.4504 0.0385 5.5553 22 6 -3.3872 2.5339 5.6607 23 6 -1.4216 2.3681 3.3737 24 6 -0.1507 2.3591 2.8300 25 6 3.2629 1.3011 3.4396 26 6 2.9249 0.0210 2.6729 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.7402 0.0156 -3.2002 33 1 0.9230 -0.6105 4.0158 34 1 -1.3372 -0.5900 4.9926 35 1 -4.1592 0.5255 2.9684 36 1 -5.2708 1.3994 4.0499 37 1 -4.1141 2.3033 3.0436 38 1 -2.7126 -0.0138 6.3560 39 1 -4.4525 0.0455 5.9839 40 1 -3.3406 -0.8278 4.9029 41 1 -3.2325 3.4454 5.0833 42 1 -4.3893 2.5413 6.0893 43 1 -2.6496 2.4813 6.4613 44 1 -2.0812 3.2034 3.1909 45 1 0.1824 3.1872 2.2219 46 1 4.1533 1.8508 3.1343 47 1 3.0400 1.3226 4.5064 48 1 2.4796 -0.7996 3.2351 49 1 3.5931 -0.2717 1.8629 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154978126.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:22 Heat of formation + Delta-G solvation = 8.830288 kcal Electronic energy + Delta-G solvation = -27718.521210 eV Core-core repulsion = 24225.128973 eV Total energy + Delta-G solvation = -3493.392237 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.58007 -40.26754 -38.14947 -37.02080 -36.31719 -33.57133 -31.99525 -31.22015 -30.61789 -28.19937 -28.07306 -27.41676 -25.29717 -24.05895 -23.48638 -23.29364 -22.45684 -20.37372 -19.86052 -18.85675 -18.06857 -17.40169 -16.69862 -16.16019 -15.98332 -15.88324 -15.55471 -15.12936 -15.08623 -14.91622 -14.56407 -14.50575 -14.22688 -13.95729 -13.78367 -13.54494 -13.15238 -13.10249 -12.96442 -12.86563 -12.70307 -12.54195 -12.50568 -12.42246 -12.24212 -12.20604 -12.00067 -11.89990 -11.80701 -11.56749 -11.41364 -11.30850 -11.19738 -10.79436 -10.22820 -9.76558 -9.64664 -9.22939 -8.20409 -5.90122 0.44413 0.55080 1.33238 1.39287 1.52280 1.99343 2.24802 2.62721 2.94684 3.10282 3.19986 3.56959 3.74784 3.84901 3.90687 4.04938 4.10644 4.16713 4.19491 4.33211 4.42486 4.51155 4.61813 4.68844 4.71097 4.79967 4.80998 4.86069 4.93199 4.94697 5.00414 5.03394 5.05280 5.07894 5.08828 5.17076 5.18457 5.21421 5.23741 5.31493 5.39988 5.43884 5.47690 5.60584 5.65024 5.78173 5.80421 5.97594 6.10116 6.16627 6.57477 7.18642 7.52758 8.07651 8.67466 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.016044 B = 0.004211 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.742527 B = 6647.417714 C = 7364.698779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.124 3.876 3 N -0.443 5.443 4 C -0.342 4.342 5 H 0.068 0.932 6 C -0.001 4.001 7 N -0.875 5.875 8 Si 0.988 3.012 9 H -0.281 1.281 10 H -0.264 1.264 11 H -0.275 1.275 12 C 0.468 3.532 13 O -0.644 6.644 14 C -0.120 4.120 15 C -0.035 4.035 16 C -0.115 4.115 17 C -0.113 4.113 18 C -0.076 4.076 19 C -0.027 4.027 20 C -0.139 4.139 21 C -0.141 4.141 22 C -0.137 4.137 23 C -0.118 4.118 24 C -0.129 4.129 25 C -0.137 4.137 26 C -0.144 4.144 27 H 0.023 0.977 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.270 0.730 33 H 0.149 0.851 34 H 0.157 0.843 35 H 0.049 0.951 36 H 0.075 0.925 37 H 0.044 0.956 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.060 0.940 41 H 0.046 0.954 42 H 0.074 0.926 43 H 0.055 0.945 44 H 0.119 0.881 45 H 0.077 0.923 46 H 0.082 0.918 47 H 0.125 0.875 48 H 0.139 0.861 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.639 -7.407 15.324 19.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.002 3.998 3 N -0.159 5.159 4 C -0.470 4.470 5 H 0.086 0.914 6 C -0.203 4.203 7 N -0.515 5.515 8 Si 0.812 3.188 9 H -0.206 1.206 10 H -0.189 1.189 11 H -0.200 1.200 12 C 0.257 3.743 13 O -0.534 6.534 14 C -0.123 4.123 15 C -0.036 4.036 16 C -0.133 4.133 17 C -0.131 4.131 18 C -0.076 4.076 19 C -0.027 4.027 20 C -0.197 4.197 21 C -0.198 4.198 22 C -0.194 4.194 23 C -0.136 4.136 24 C -0.147 4.147 25 C -0.174 4.174 26 C -0.180 4.180 27 H 0.042 0.958 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.104 0.896 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.166 0.834 34 H 0.174 0.826 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.093 0.907 43 H 0.075 0.925 44 H 0.137 0.863 45 H 0.096 0.904 46 H 0.100 0.900 47 H 0.143 0.857 48 H 0.157 0.843 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.591 -7.006 15.119 18.748 hybrid contribution 0.495 1.166 -1.597 2.038 sum -8.096 -5.840 13.522 16.808 Atomic orbital electron populations 1.21969 0.96272 1.00195 1.00124 1.21670 0.94975 0.81899 1.01262 1.43961 1.55003 1.12868 1.04049 1.19718 1.36153 1.06658 0.84430 0.91418 1.25928 0.95385 0.97150 1.01799 1.70248 1.31189 1.22233 1.27833 0.84956 0.78102 0.78153 0.77560 1.20585 1.18903 1.20046 1.19667 0.83289 0.86413 0.84939 1.90446 1.56211 1.18827 1.87869 1.19897 0.92650 1.04537 0.95259 1.18728 0.92014 0.95123 0.97739 1.21212 0.97287 0.97427 0.97355 1.21412 0.92848 0.98773 1.00063 1.20040 0.96564 0.93856 0.97164 1.19534 0.90076 0.97630 0.95458 1.21899 0.98717 1.01411 0.97626 1.21945 1.02648 0.95547 0.99623 1.21879 1.02470 0.96213 0.98824 1.20935 0.94711 0.99472 0.98440 1.20899 0.95352 0.98154 1.00289 1.23094 0.96164 1.00192 0.97976 1.23292 1.00838 0.91334 1.02579 0.95751 0.92481 0.92712 0.89561 0.91437 0.91904 0.83370 0.82589 0.93187 0.90588 0.93686 0.91566 0.91063 0.92076 0.93523 0.90721 0.92539 0.86314 0.90417 0.89985 0.85671 0.84324 0.89010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.72 9.60 71.98 0.69 -5.02 16 2 C 0.12 5.75 5.17 86.38 0.45 6.19 16 3 N -0.44 -23.82 2.62 -635.53 -1.67 -25.49 16 4 C -0.34 -20.08 9.49 84.04 0.80 -19.29 16 5 H 0.07 4.32 7.27 -2.91 -0.02 4.30 16 6 C 0.00 -0.07 5.25 84.93 0.45 0.37 16 7 N -0.88 -45.21 7.57 21.66 0.16 -45.04 16 8 Si 0.99 43.32 29.56 68.60 2.03 45.34 16 9 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 10 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 11 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 12 C 0.47 24.61 5.68 87.65 0.50 25.10 16 13 O -0.64 -39.63 16.44 -3.09 -0.05 -39.68 16 14 C -0.12 -4.73 1.50 -53.67 -0.08 -4.81 16 15 C -0.04 -1.27 4.14 -19.87 -0.08 -1.36 16 16 C -0.12 -3.13 9.36 22.27 0.21 -2.92 16 17 C -0.11 -2.68 8.98 22.27 0.20 -2.48 16 18 C -0.08 -1.95 4.76 -19.87 -0.09 -2.04 16 19 C -0.03 -0.51 0.85 -52.93 -0.05 -0.56 16 20 C -0.14 -2.71 8.29 71.98 0.60 -2.11 16 21 C -0.14 -2.00 7.13 71.98 0.51 -1.49 16 22 C -0.14 -2.39 8.29 71.98 0.60 -1.79 16 23 C -0.12 -3.78 8.71 22.27 0.19 -3.59 16 24 C -0.13 -5.11 8.75 22.27 0.19 -4.91 16 25 C -0.14 -4.44 9.90 30.59 0.30 -4.14 16 26 C -0.14 -4.34 7.31 30.60 0.22 -4.12 16 27 H 0.02 1.06 6.06 -2.38 -0.01 1.05 16 28 H 0.06 2.94 6.08 -2.39 -0.01 2.92 16 29 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.09 4.31 5.88 -2.39 -0.01 4.29 16 31 H 0.07 2.68 4.47 -2.39 -0.01 2.67 16 32 H 0.27 13.06 8.31 -92.71 -0.77 12.29 16 33 H 0.15 3.12 5.95 -2.91 -0.02 3.10 16 34 H 0.16 2.63 5.90 -2.91 -0.02 2.62 16 35 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.04 0.98 7.39 -2.39 -0.02 0.96 16 38 H 0.07 0.86 7.51 -2.39 -0.02 0.84 16 39 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.06 0.87 7.51 -2.39 -0.02 0.85 16 41 H 0.05 0.91 7.39 -2.39 -0.02 0.89 16 42 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.12 3.58 7.10 -2.91 -0.02 3.56 16 45 H 0.08 3.76 7.12 -2.91 -0.02 3.74 16 46 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 47 H 0.13 3.27 8.14 -2.38 -0.02 3.25 16 48 H 0.14 3.05 6.10 -2.39 -0.01 3.04 16 49 H 0.09 2.97 7.71 -2.38 -0.02 2.95 16 Total: -1.00 -70.80 373.54 7.02 -63.78 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: 0.94 Total: 30.04 kcal Atomic # 6 Polarization: -34.56 SS G_CDS: 5.61 Total: -28.96 kcal Atomic # 7 Polarization: -69.03 SS G_CDS: -1.50 Total: -70.53 kcal Atomic # 8 Polarization: -39.63 SS G_CDS: -0.05 Total: -39.68 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -70.80 7.02 -63.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154978126.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.609 kcal (2) G-P(sol) polarization free energy of solvation -70.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds