Wall clock time and date at job start Tue Mar 31 2020 11:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46907 * 2 1 4 4 N 1.46903 * 109.47232 * 239.99474 * 2 1 3 5 5 C 1.46900 * 110.99811 * 85.00114 * 4 2 1 6 6 C 1.52997 * 109.46987 * 185.01900 * 5 4 2 7 7 C 1.53001 * 112.84522 * 55.01828 * 6 5 4 8 8 C 1.53003 * 117.49871 * 118.95100 * 7 6 5 9 9 C 1.53001 * 60.00063 * 252.50914 * 8 7 6 10 10 C 1.53777 * 113.61337 * 186.20647 * 6 5 4 11 11 C 1.53957 * 87.01948 * 89.23397 * 10 6 5 12 12 C 1.53772 * 113.61627 * 283.81810 * 6 5 4 13 13 C 1.50704 * 109.47023 * 119.99524 * 2 1 3 14 14 C 1.38298 * 119.92765 * 79.72497 * 13 2 1 15 15 C 1.38109 * 120.06460 * 179.72578 * 14 13 2 16 16 C 1.38872 * 119.92920 * 0.52933 * 15 14 13 17 17 O 1.35758 * 120.06775 * 179.72525 * 16 15 14 18 18 C 1.34824 * 116.99886 * 185.55364 * 17 16 15 19 19 H 1.08001 * 120.00529 * 354.94841 * 18 17 16 20 20 C 1.38660 * 119.99883 * 174.94238 * 18 17 16 21 21 N 1.31560 * 119.99924 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00119 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47344 * 90.00090 * 22 20 18 24 24 H 1.48507 * 109.47001 * 210.00255 * 22 20 18 25 25 H 1.48498 * 109.47216 * 330.00119 * 22 20 18 26 26 C 1.38875 * 119.86364 * 359.74433 * 16 15 14 27 27 C 1.38098 * 119.93293 * 0.02562 * 26 16 15 28 28 H 1.08997 * 109.46746 * 300.00538 * 1 2 3 29 29 H 1.08995 * 109.46723 * 60.00496 * 1 2 3 30 30 H 1.09000 * 109.46907 * 180.02562 * 1 2 3 31 31 H 1.00898 * 110.99298 * 208.95226 * 4 2 1 32 32 H 1.09007 * 109.46869 * 65.02426 * 5 4 2 33 33 H 1.08997 * 109.47260 * 305.02777 * 5 4 2 34 34 H 1.08997 * 115.55979 * 264.64095 * 7 6 5 35 35 H 1.08997 * 117.50197 * 359.97438 * 8 7 6 36 36 H 1.09007 * 117.49370 * 145.01785 * 8 7 6 37 37 H 1.09000 * 117.49663 * 252.51263 * 9 8 7 38 38 H 1.08998 * 117.49983 * 107.48973 * 9 8 7 39 39 H 1.09007 * 113.61829 * 203.75132 * 10 6 5 40 40 H 1.09002 * 113.61885 * 334.65612 * 10 6 5 41 41 H 1.08994 * 113.53755 * 270.81618 * 11 10 6 42 42 H 1.08995 * 113.66837 * 139.92666 * 11 10 6 43 43 H 1.08997 * 113.62023 * 25.35226 * 12 6 5 44 44 H 1.09009 * 113.61231 * 156.25453 * 12 6 5 45 45 H 1.07999 * 119.96747 * 359.97438 * 14 13 2 46 46 H 1.07998 * 120.02921 * 180.27883 * 15 14 13 47 47 H 0.96993 * 120.00060 * 179.97438 * 21 20 18 48 48 H 1.08010 * 120.03213 * 179.97438 * 26 16 15 49 49 H 1.08000 * 119.96726 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0826 0.2224 -2.3469 6 6 2.4753 -0.5596 -3.6018 7 6 1.5492 -1.7462 -3.8765 8 6 0.7707 -1.7446 -5.1936 9 6 0.0423 -1.4815 -3.8741 10 6 2.7169 0.3308 -4.8321 11 6 4.1830 0.4295 -4.3727 12 6 3.9696 -0.9176 -3.6621 13 6 2.0324 -0.7103 1.2306 14 6 2.0608 -2.0926 1.2661 15 6 2.5259 -2.7464 2.3902 16 6 2.9549 -2.0145 3.4896 17 8 3.4074 -2.6544 4.5982 18 6 3.6996 -1.8900 5.6697 19 1 3.6484 -0.8138 5.5955 20 6 4.0657 -2.4857 6.8671 21 7 4.1284 -3.7967 6.9574 22 14 4.4699 -1.4268 8.3519 23 1 3.2335 -1.1834 9.1377 24 1 5.4670 -2.1259 9.2018 25 1 5.0305 -0.1292 7.8967 26 6 2.9198 -0.6267 3.4529 27 6 2.4581 0.0213 2.3242 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 2.9174 -1.1205 -1.0285 32 1 2.8253 0.9966 -2.1540 33 1 1.1068 0.6844 -2.4971 34 1 1.8919 -2.7082 -3.4955 35 1 0.9179 -0.8981 -5.8643 36 1 0.6012 -2.7058 -5.6791 37 1 -0.6065 -2.2695 -3.4915 38 1 -0.2894 -0.4621 -3.6768 39 1 2.5908 -0.1913 -5.7806 40 1 2.1822 1.2800 -4.7960 41 1 4.3704 1.2582 -3.6900 42 1 4.9020 0.3826 -5.1906 43 1 4.4448 -0.9749 -2.6829 44 1 4.1866 -1.7817 -4.2903 45 1 1.7227 -2.6612 0.4124 46 1 2.5520 -3.8257 2.4156 47 1 4.3848 -4.2134 7.7949 48 1 3.2525 -0.0547 4.3067 49 1 2.4302 1.1006 2.2952 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182059077.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:35 Heat of formation + Delta-G solvation = 23.235292 kcal Electronic energy + Delta-G solvation = -26059.235147 eV Core-core repulsion = 22566.467558 eV Total energy + Delta-G solvation = -3492.767589 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.13679 -40.74234 -38.87864 -36.61886 -36.36445 -34.26968 -32.11890 -31.70958 -29.36571 -27.72176 -27.34118 -26.63289 -25.01206 -23.80370 -23.28801 -22.82811 -21.76777 -21.27611 -19.75412 -18.96636 -18.70923 -17.46073 -16.76064 -16.60463 -16.27305 -15.97839 -15.63328 -15.61799 -15.49183 -15.28138 -14.84313 -14.47155 -14.22806 -13.99402 -13.86168 -13.50959 -13.50178 -13.26850 -13.10310 -12.99530 -12.77729 -12.48881 -12.30598 -12.29092 -12.21273 -12.13717 -12.02966 -11.61188 -11.45232 -11.34231 -11.17698 -11.06343 -10.78968 -10.72318 -10.41396 -9.76498 -9.21099 -8.90135 -8.47379 -6.15479 0.61050 0.69775 1.34271 1.43735 1.51728 2.17363 2.81621 3.09772 3.12720 3.22691 3.53464 3.68241 3.86542 3.91761 3.93689 4.02278 4.09386 4.15449 4.23405 4.28635 4.38179 4.43276 4.57992 4.62185 4.71652 4.75530 4.76717 4.76857 4.88384 4.91208 4.97721 4.99276 5.00929 5.06208 5.11670 5.13542 5.14974 5.18306 5.26225 5.31047 5.41743 5.46587 5.48800 5.53418 5.59738 5.62930 5.72056 5.76103 6.03079 6.22345 6.31086 6.55043 6.97432 7.79085 8.76063 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.024573 B = 0.002455 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.176563 B =11401.033985 C =11523.203311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.148 3.852 3 H 0.050 0.950 4 N -0.674 5.674 5 C 0.089 3.911 6 C -0.044 4.044 7 C -0.117 4.117 8 C -0.186 4.186 9 C -0.169 4.169 10 C -0.127 4.127 11 C -0.141 4.141 12 C -0.133 4.133 13 C -0.162 4.162 14 C -0.043 4.043 15 C -0.206 4.206 16 C 0.114 3.886 17 O -0.234 6.234 18 C -0.413 4.413 19 H 0.101 0.899 20 C -0.024 4.024 21 N -0.922 5.922 22 Si 1.018 2.982 23 H -0.263 1.263 24 H -0.271 1.271 25 H -0.253 1.253 26 C -0.242 4.242 27 C -0.065 4.065 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.339 0.661 32 H 0.029 0.971 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.055 0.945 44 H 0.082 0.918 45 H 0.145 0.855 46 H 0.110 0.890 47 H 0.272 0.728 48 H 0.117 0.883 49 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.025 10.878 -23.974 26.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.039 3.961 3 H 0.068 0.932 4 N -0.305 5.305 5 C -0.040 4.040 6 C -0.044 4.044 7 C -0.135 4.135 8 C -0.222 4.222 9 C -0.206 4.206 10 C -0.164 4.164 11 C -0.179 4.179 12 C -0.171 4.171 13 C -0.163 4.163 14 C -0.061 4.061 15 C -0.225 4.225 16 C 0.064 3.936 17 O -0.140 6.140 18 C -0.489 4.489 19 H 0.118 0.882 20 C -0.221 4.221 21 N -0.560 5.560 22 Si 0.838 3.162 23 H -0.188 1.188 24 H -0.196 1.196 25 H -0.176 1.176 26 C -0.262 4.262 27 C -0.083 4.083 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.158 0.842 32 H 0.047 0.953 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.121 0.879 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.101 0.899 45 H 0.162 0.838 46 H 0.128 0.872 47 H 0.081 0.919 48 H 0.135 0.865 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.560 10.247 -23.958 26.644 hybrid contribution 1.085 0.334 1.469 1.857 sum -4.474 10.581 -22.489 25.253 Atomic orbital electron populations 1.21711 0.93583 1.01979 1.01156 1.20122 0.95735 0.94424 0.85839 0.93225 1.60495 1.33373 1.32979 1.03659 1.21716 1.00380 0.92800 0.89100 1.21305 0.93894 0.94505 0.94691 1.21846 0.92692 0.98525 1.00441 1.23182 1.04854 1.03182 0.91014 1.22740 0.94908 1.02117 1.00848 1.23112 0.96198 0.99577 0.97560 1.22843 0.97307 0.97368 1.00343 1.22971 0.95519 0.98095 1.00490 1.19752 1.06288 0.93440 0.96791 1.20742 0.95536 0.94158 0.95705 1.20480 1.08622 0.99439 0.93984 1.19938 0.92913 0.92442 0.88305 1.83945 1.73731 1.36771 1.19583 1.21810 1.47640 0.91411 0.88051 0.88175 1.26593 0.96441 0.97781 1.01284 1.70185 1.46920 1.10931 1.27958 0.84592 0.78681 0.77470 0.75501 1.18821 1.19561 1.17648 1.21207 1.10309 0.93474 1.01171 1.20933 0.95803 0.99875 0.91686 0.92978 0.91683 0.92892 0.84224 0.95304 0.90640 0.89226 0.87900 0.89138 0.89923 0.89214 0.88853 0.91220 0.90559 0.90961 0.92632 0.89892 0.83781 0.87230 0.91850 0.86507 0.84510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.39 71.98 0.68 -2.03 16 2 C 0.15 3.38 2.81 44.17 0.12 3.51 16 3 H 0.05 1.07 7.72 -2.39 -0.02 1.06 16 4 N -0.67 -13.72 5.26 -495.43 -2.61 -16.33 16 5 C 0.09 1.50 4.40 86.30 0.38 1.88 16 6 C -0.04 -0.66 0.92 -51.66 -0.05 -0.71 16 7 C -0.12 -1.92 5.13 -10.79 -0.06 -1.97 16 8 C -0.19 -2.59 9.55 30.60 0.29 -2.30 16 9 C -0.17 -2.73 9.83 30.60 0.30 -2.43 16 10 C -0.13 -1.59 6.38 31.18 0.20 -1.39 16 11 C -0.14 -1.89 7.74 31.18 0.24 -1.65 16 12 C -0.13 -2.09 7.13 31.12 0.22 -1.87 16 13 C -0.16 -4.94 4.71 -19.83 -0.09 -5.03 16 14 C -0.04 -1.46 9.00 22.25 0.20 -1.26 16 15 C -0.21 -8.89 9.99 22.39 0.22 -8.67 16 16 C 0.11 5.75 6.65 22.57 0.15 5.90 16 17 O -0.23 -14.25 9.76 -22.77 -0.22 -14.47 16 18 C -0.41 -24.31 9.49 67.92 0.64 -23.67 16 19 H 0.10 5.41 5.20 -2.91 -0.02 5.40 16 20 C -0.02 -1.36 5.49 84.83 0.47 -0.89 16 21 N -0.92 -57.18 13.67 21.62 0.30 -56.89 16 22 Si 1.02 43.18 29.55 68.60 2.03 45.21 16 23 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 24 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 25 H -0.25 -9.93 7.11 99.48 0.71 -9.23 16 26 C -0.24 -10.59 9.17 22.39 0.21 -10.38 16 27 C -0.06 -2.20 9.66 22.25 0.21 -1.99 16 28 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.06 1.17 7.39 -2.39 -0.02 1.15 16 30 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.34 7.61 7.43 -89.70 -0.67 6.95 16 32 H 0.03 0.50 7.31 -2.38 -0.02 0.48 16 33 H 0.08 1.24 6.48 -2.39 -0.02 1.22 16 34 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.10 1.24 6.14 -2.39 -0.01 1.22 16 36 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.08 1.42 8.14 -2.39 -0.02 1.41 16 38 H 0.09 1.42 7.33 -2.39 -0.02 1.40 16 39 H 0.09 1.07 6.37 -2.38 -0.02 1.05 16 40 H 0.07 0.82 8.10 -2.39 -0.02 0.80 16 41 H 0.08 1.05 7.61 -2.39 -0.02 1.03 16 42 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.05 0.99 7.59 -2.39 -0.02 0.97 16 44 H 0.08 1.28 8.10 -2.38 -0.02 1.26 16 45 H 0.14 4.19 7.72 -2.91 -0.02 4.17 16 46 H 0.11 4.75 8.06 -2.91 -0.02 4.72 16 47 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 48 H 0.12 5.21 5.64 -2.91 -0.02 5.20 16 49 H 0.14 3.78 8.03 -2.91 -0.02 3.76 16 Total: -1.00 -67.02 386.40 4.11 -62.91 By element: Atomic # 1 Polarization: 34.26 SS G_CDS: 0.27 Total: 34.53 kcal Atomic # 6 Polarization: -59.31 SS G_CDS: 4.34 Total: -54.96 kcal Atomic # 7 Polarization: -70.90 SS G_CDS: -2.31 Total: -73.21 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.22 Total: -14.47 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -67.02 4.11 -62.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182059077.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.142 kcal (2) G-P(sol) polarization free energy of solvation -67.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds