Wall clock time and date at job start Tue Mar 31 2020 11:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34774 * 120.00195 * 2 1 4 4 O 1.21588 * 119.99807 * 185.98367 * 3 2 1 5 5 C 1.47633 * 120.00144 * 5.98809 * 3 2 1 6 6 C 1.40018 * 119.89563 * 317.37382 * 5 3 2 7 7 C 1.36313 * 120.10842 * 180.02562 * 6 5 3 8 8 C 1.40886 * 119.89414 * 359.97321 * 7 6 5 9 9 C 1.41103 * 120.10487 * 179.97438 * 8 7 6 10 10 H 1.07998 * 120.00625 * 336.61645 * 9 8 7 11 11 C 1.40237 * 120.00037 * 156.89232 * 9 8 7 12 12 N 1.30647 * 119.99580 * 335.47292 * 11 9 8 13 13 Si 1.86795 * 120.00205 * 155.48038 * 11 9 8 14 14 H 1.48490 * 109.47369 * 94.98539 * 13 11 9 15 15 H 1.48504 * 109.46727 * 214.98830 * 13 11 9 16 16 H 1.48504 * 109.47070 * 334.98258 * 13 11 9 17 17 C 1.40891 * 119.79222 * 0.25806 * 8 7 6 18 18 C 1.36319 * 119.89089 * 359.50533 * 17 8 7 19 19 C 1.46504 * 119.99576 * 179.97438 * 2 1 3 20 20 C 1.53017 * 109.46980 * 60.00469 * 19 2 1 21 21 C 1.52985 * 109.45952 * 164.04605 * 20 19 2 22 22 C 1.52987 * 109.51261 * 315.98443 * 21 20 19 23 23 C 1.53006 * 109.47051 * 112.93469 * 22 21 20 24 24 C 1.53004 * 109.43083 * 284.04743 * 23 22 21 25 25 C 1.52982 * 109.48533 * 75.96253 * 24 23 22 26 26 C 1.52994 * 109.50412 * 247.05931 * 25 24 23 27 27 H 1.08998 * 109.46884 * 84.65069 * 1 2 3 28 28 H 1.08994 * 109.47170 * 204.65249 * 1 2 3 29 29 H 1.09000 * 109.46568 * 324.65287 * 1 2 3 30 30 H 1.07998 * 119.94616 * 359.97400 * 6 5 3 31 31 H 1.08002 * 120.05640 * 179.97438 * 7 6 5 32 32 H 0.97001 * 119.99912 * 179.97438 * 12 11 9 33 33 H 1.07996 * 120.05823 * 179.74721 * 17 8 7 34 34 H 1.07997 * 119.94688 * 180.25762 * 18 17 8 35 35 H 1.09002 * 109.46985 * 179.97438 * 19 2 1 36 36 H 1.09005 * 109.46900 * 284.03808 * 20 19 2 37 37 H 1.08998 * 109.47365 * 44.04434 * 20 19 2 38 38 H 1.09008 * 109.46277 * 195.97312 * 21 20 19 39 39 H 1.09002 * 109.46201 * 75.99254 * 21 20 19 40 40 H 1.09003 * 109.46722 * 352.94022 * 22 21 20 41 41 H 1.08999 * 109.47156 * 232.93936 * 22 21 20 42 42 H 1.08994 * 109.47630 * 164.05644 * 23 22 21 43 43 H 1.08996 * 109.48384 * 44.03911 * 23 22 21 44 44 H 1.08990 * 109.47105 * 315.95517 * 24 23 22 45 45 H 1.09001 * 109.46338 * 195.96278 * 24 23 22 46 46 H 1.09001 * 109.46536 * 127.05063 * 25 24 23 47 47 H 1.09003 * 109.46421 * 7.07090 * 25 24 23 48 48 H 1.08993 * 109.47629 * 284.01329 * 26 25 24 49 49 H 1.09003 * 109.47268 * 164.00874 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3499 1.1699 -0.1098 5 6 1.4069 2.4422 0.1334 6 6 0.2152 2.6401 -0.5745 7 6 -0.4640 3.8160 -0.4550 8 6 0.0347 4.8328 0.3830 9 6 -0.6645 6.0519 0.5096 10 1 -1.3372 6.3724 -0.2721 11 6 -0.4814 6.8503 1.6479 12 7 -0.0823 6.3090 2.7680 13 14 -0.8084 8.6874 1.5627 14 1 -2.1919 8.9659 2.0246 15 1 0.1580 9.4030 2.4341 16 1 -0.6510 9.1538 0.1616 17 6 1.2368 4.6310 1.0895 18 6 1.9065 3.4499 0.9674 19 6 2.1975 -1.2688 0.0006 20 6 1.8278 -2.0717 -1.2485 21 6 2.8559 -3.1842 -1.4620 22 6 4.2643 -2.6264 -1.2481 23 6 4.8796 -3.2604 0.0011 24 6 4.2642 -2.6256 1.2499 25 6 2.8558 -3.1832 1.4644 26 6 1.8278 -2.0706 1.2502 27 1 -0.3633 0.0958 -1.0232 28 1 -0.3633 -0.9339 0.4286 29 1 -0.3632 0.8383 0.5946 30 1 -0.1661 1.8602 -1.2170 31 1 -1.3829 3.9679 -1.0018 32 1 0.0447 6.8613 3.5553 33 1 1.6251 5.4091 1.7299 34 1 2.8258 3.2926 1.5118 35 1 3.2692 -1.0697 0.0000 36 1 0.8387 -2.5110 -1.1185 37 1 1.8211 -1.4116 -2.1159 38 1 2.7684 -3.5696 -2.4779 39 1 2.6724 -3.9897 -0.7509 40 1 4.2111 -1.5455 -1.1183 41 1 4.8826 -2.8583 -2.1153 42 1 5.9566 -3.0923 0.0011 43 1 4.6790 -4.3317 0.0015 44 1 4.2110 -1.5449 1.1194 45 1 4.8825 -2.8569 2.1172 46 1 2.7684 -3.5678 2.4806 47 1 2.6722 -3.9892 0.7539 48 1 1.8213 -1.4100 2.1171 49 1 0.8386 -2.5098 1.1207 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270240301.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:17 Heat of formation + Delta-G solvation = -22.401024 kcal Electronic energy + Delta-G solvation = -27008.968863 eV Core-core repulsion = 23514.222334 eV Total energy + Delta-G solvation = -3494.746528 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.23014 -38.49586 -36.97400 -35.05840 -33.88391 -32.87960 -31.92565 -30.03130 -29.50544 -26.95775 -26.34875 -25.96170 -25.09552 -22.12700 -21.41160 -21.03697 -20.77192 -19.54493 -18.55992 -17.53690 -16.64015 -16.29761 -15.43295 -15.11001 -14.74820 -14.46827 -14.22870 -14.15842 -14.11196 -13.64671 -13.32859 -13.26852 -12.89448 -12.69343 -12.42121 -12.14527 -12.06191 -11.81614 -11.75068 -11.61261 -11.36419 -11.24751 -11.21487 -11.16765 -11.10347 -10.95702 -10.79833 -10.58275 -10.43521 -10.06103 -9.86641 -9.76712 -9.50753 -9.24263 -8.89746 -8.15758 -7.65279 -7.53386 -7.03884 -4.53559 2.37744 2.92538 2.97434 3.03330 3.05213 3.52919 3.73903 3.78261 4.47133 4.53883 4.80691 4.81252 4.97121 5.08604 5.16798 5.18099 5.22104 5.32952 5.48093 5.56390 5.61416 5.66212 5.72626 5.76928 5.82872 5.89931 5.92158 5.95160 6.01797 6.09105 6.12170 6.16285 6.18599 6.21780 6.26825 6.28094 6.34422 6.50999 6.60725 6.82285 6.85209 7.05712 7.09259 7.16228 7.47029 7.65023 7.81914 7.89753 8.06606 8.14217 8.44582 8.67205 8.79586 9.00363 9.89877 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.029734 B = 0.002834 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.456324 B = 9879.394163 C =10094.249288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.618 5.618 3 C 0.577 3.423 4 O -0.568 6.568 5 C -0.279 4.279 6 C -0.054 4.054 7 C -0.238 4.238 8 C 0.128 3.872 9 C -0.450 4.450 10 H 0.084 0.916 11 C 0.080 3.920 12 N -0.765 5.765 13 Si 0.906 3.094 14 H -0.268 1.268 15 H -0.272 1.272 16 H -0.257 1.257 17 C -0.184 4.184 18 C -0.041 4.041 19 C 0.118 3.882 20 C -0.126 4.126 21 C -0.122 4.122 22 C -0.136 4.136 23 C -0.116 4.116 24 C -0.135 4.135 25 C -0.122 4.122 26 C -0.128 4.128 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.287 0.713 33 H 0.113 0.887 34 H 0.092 0.908 35 H 0.125 0.875 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.079 0.921 45 H 0.057 0.943 46 H 0.058 0.942 47 H 0.072 0.928 48 H 0.065 0.935 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.975 -15.238 -2.399 15.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.351 5.351 3 C 0.372 3.628 4 O -0.448 6.448 5 C -0.284 4.284 6 C -0.072 4.072 7 C -0.257 4.257 8 C 0.125 3.875 9 C -0.477 4.477 10 H 0.102 0.898 11 C -0.143 4.143 12 N -0.388 5.388 13 Si 0.729 3.271 14 H -0.193 1.193 15 H -0.197 1.197 16 H -0.180 1.180 17 C -0.203 4.203 18 C -0.060 4.060 19 C 0.015 3.985 20 C -0.165 4.165 21 C -0.160 4.160 22 C -0.173 4.173 23 C -0.153 4.153 24 C -0.172 4.172 25 C -0.159 4.159 26 C -0.166 4.166 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.098 0.902 33 H 0.131 0.869 34 H 0.110 0.890 35 H 0.142 0.858 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.097 0.903 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.091 0.909 48 H 0.084 0.916 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.642 -15.184 -2.193 15.568 hybrid contribution -0.409 0.793 0.111 0.900 sum 2.233 -14.391 -2.082 14.711 Atomic orbital electron populations 1.21927 0.80365 1.02708 1.01198 1.47869 1.06594 1.05395 1.75202 1.18783 0.86642 0.83676 0.73714 1.90622 1.14887 1.87682 1.51649 1.18806 1.01466 0.95413 1.12683 1.20566 0.93089 0.96699 0.96884 1.20640 1.01611 0.94854 1.08596 1.17707 0.90147 0.91209 0.88430 1.19761 1.22244 1.02564 1.03168 0.89782 1.26076 0.92411 1.01386 0.94390 1.69780 1.30186 1.38377 1.00444 0.86324 0.79112 0.81584 0.80030 1.19294 1.19717 1.18036 1.20844 0.96585 0.97281 1.05575 1.20320 0.97085 0.92828 0.95760 1.21677 1.00036 0.83105 0.93638 1.21975 0.98770 0.97414 0.98323 1.21804 0.94652 0.98194 1.01327 1.21890 0.95844 1.01974 0.97572 1.21675 0.99543 0.99405 0.94692 1.21881 0.95891 1.01850 0.97610 1.21800 0.94599 0.98165 1.01383 1.21983 0.98802 0.97508 0.98346 0.93318 0.92330 0.89771 0.88533 0.88622 0.90229 0.86873 0.88968 0.85833 0.92052 0.91766 0.92363 0.90938 0.90123 0.92419 0.92322 0.92111 0.90281 0.92373 0.92286 0.90940 0.91577 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.19 8.27 59.85 0.49 1.68 16 2 N -0.62 -10.49 2.76 -175.11 -0.48 -10.97 16 3 C 0.58 12.36 7.29 -12.43 -0.09 12.27 16 4 O -0.57 -13.53 16.30 5.29 0.09 -13.44 16 5 C -0.28 -6.40 5.17 -104.73 -0.54 -6.94 16 6 C -0.05 -1.16 7.53 -39.61 -0.30 -1.45 16 7 C -0.24 -5.53 9.73 -39.27 -0.38 -5.91 16 8 C 0.13 3.28 5.57 -106.80 -0.59 2.68 16 9 C -0.45 -11.28 9.01 -37.75 -0.34 -11.62 16 10 H 0.08 2.01 7.96 -52.49 -0.42 1.59 16 11 C 0.08 1.89 4.98 -17.30 -0.09 1.80 16 12 N -0.77 -18.70 11.30 55.56 0.63 -18.07 16 13 Si 0.91 17.49 29.62 -169.99 -5.04 12.45 16 14 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 15 H -0.27 -5.17 7.11 56.52 0.40 -4.76 16 16 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 17 C -0.18 -4.70 8.67 -39.27 -0.34 -5.04 16 18 C -0.04 -0.99 9.59 -39.61 -0.38 -1.37 16 19 C 0.12 1.68 1.91 -67.92 -0.13 1.55 16 20 C -0.13 -1.51 4.80 -26.73 -0.13 -1.64 16 21 C -0.12 -1.23 5.48 -26.75 -0.15 -1.38 16 22 C -0.14 -1.50 5.47 -26.73 -0.15 -1.64 16 23 C -0.12 -1.15 5.59 -26.73 -0.15 -1.30 16 24 C -0.14 -1.50 5.47 -26.74 -0.15 -1.65 16 25 C -0.12 -1.24 5.48 -26.74 -0.15 -1.39 16 26 C -0.13 -1.55 4.64 -26.73 -0.12 -1.68 16 27 H 0.05 0.66 6.90 -51.93 -0.36 0.30 16 28 H 0.06 0.70 6.80 -51.93 -0.35 0.35 16 29 H 0.08 1.40 5.94 -51.93 -0.31 1.09 16 30 H 0.10 1.80 5.56 -52.49 -0.29 1.50 16 31 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 32 H 0.29 6.30 8.29 -40.82 -0.34 5.96 16 33 H 0.11 2.96 6.32 -52.49 -0.33 2.63 16 34 H 0.09 2.19 8.06 -52.49 -0.42 1.77 16 35 H 0.12 1.97 1.60 -51.93 -0.08 1.89 16 36 H 0.06 0.66 7.82 -51.93 -0.41 0.25 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.54 8.14 -51.92 -0.42 0.11 16 39 H 0.07 0.66 4.69 -51.93 -0.24 0.41 16 40 H 0.08 1.13 5.47 -51.93 -0.28 0.84 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.53 7.47 -51.93 -0.39 0.14 16 44 H 0.08 1.10 5.47 -51.93 -0.28 0.82 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.07 0.66 4.69 -51.93 -0.24 0.42 16 48 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 49 H 0.06 0.67 7.04 -51.93 -0.37 0.31 16 LS Contribution 361.08 15.07 5.44 5.44 Total: -1.00 -27.74 361.08 -10.34 -38.08 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -7.30 Total: 9.56 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: -3.68 Total: -23.04 kcal Atomic # 7 Polarization: -29.19 SS G_CDS: 0.14 Total: -29.05 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.09 Total: -13.44 kcal Atomic # 14 Polarization: 17.49 SS G_CDS: -5.04 Total: 12.45 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -27.74 -10.34 -38.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270240301.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.677 kcal (2) G-P(sol) polarization free energy of solvation -27.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds