Wall clock time and date at job start Tue Mar 31 2020 11:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34774 * 120.00195 * 2 1 4 4 O 1.21588 * 119.99807 * 185.98367 * 3 2 1 5 5 C 1.47633 * 120.00144 * 5.98809 * 3 2 1 6 6 C 1.40018 * 119.89563 * 317.37382 * 5 3 2 7 7 C 1.36313 * 120.10842 * 180.02562 * 6 5 3 8 8 C 1.40886 * 119.89414 * 359.97321 * 7 6 5 9 9 C 1.41103 * 120.10487 * 179.97438 * 8 7 6 10 10 H 1.07998 * 120.00625 * 336.61645 * 9 8 7 11 11 C 1.40237 * 120.00037 * 156.89232 * 9 8 7 12 12 N 1.30647 * 119.99580 * 335.47292 * 11 9 8 13 13 Si 1.86795 * 120.00205 * 155.48038 * 11 9 8 14 14 H 1.48490 * 109.47369 * 94.98539 * 13 11 9 15 15 H 1.48504 * 109.46727 * 214.98830 * 13 11 9 16 16 H 1.48504 * 109.47070 * 334.98258 * 13 11 9 17 17 C 1.40891 * 119.79222 * 0.25806 * 8 7 6 18 18 C 1.36319 * 119.89089 * 359.50533 * 17 8 7 19 19 C 1.46504 * 119.99576 * 179.97438 * 2 1 3 20 20 C 1.53017 * 109.46980 * 60.00469 * 19 2 1 21 21 C 1.52985 * 109.45952 * 164.04605 * 20 19 2 22 22 C 1.52987 * 109.51261 * 315.98443 * 21 20 19 23 23 C 1.53006 * 109.47051 * 112.93469 * 22 21 20 24 24 C 1.53004 * 109.43083 * 284.04743 * 23 22 21 25 25 C 1.52982 * 109.48533 * 75.96253 * 24 23 22 26 26 C 1.52994 * 109.50412 * 247.05931 * 25 24 23 27 27 H 1.08998 * 109.46884 * 84.65069 * 1 2 3 28 28 H 1.08994 * 109.47170 * 204.65249 * 1 2 3 29 29 H 1.09000 * 109.46568 * 324.65287 * 1 2 3 30 30 H 1.07998 * 119.94616 * 359.97400 * 6 5 3 31 31 H 1.08002 * 120.05640 * 179.97438 * 7 6 5 32 32 H 0.97001 * 119.99912 * 179.97438 * 12 11 9 33 33 H 1.07996 * 120.05823 * 179.74721 * 17 8 7 34 34 H 1.07997 * 119.94688 * 180.25762 * 18 17 8 35 35 H 1.09002 * 109.46985 * 179.97438 * 19 2 1 36 36 H 1.09005 * 109.46900 * 284.03808 * 20 19 2 37 37 H 1.08998 * 109.47365 * 44.04434 * 20 19 2 38 38 H 1.09008 * 109.46277 * 195.97312 * 21 20 19 39 39 H 1.09002 * 109.46201 * 75.99254 * 21 20 19 40 40 H 1.09003 * 109.46722 * 352.94022 * 22 21 20 41 41 H 1.08999 * 109.47156 * 232.93936 * 22 21 20 42 42 H 1.08994 * 109.47630 * 164.05644 * 23 22 21 43 43 H 1.08996 * 109.48384 * 44.03911 * 23 22 21 44 44 H 1.08990 * 109.47105 * 315.95517 * 24 23 22 45 45 H 1.09001 * 109.46338 * 195.96278 * 24 23 22 46 46 H 1.09001 * 109.46536 * 127.05063 * 25 24 23 47 47 H 1.09003 * 109.46421 * 7.07090 * 25 24 23 48 48 H 1.08993 * 109.47629 * 284.01329 * 26 25 24 49 49 H 1.09003 * 109.47268 * 164.00874 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3499 1.1699 -0.1098 5 6 1.4069 2.4422 0.1334 6 6 0.2152 2.6401 -0.5745 7 6 -0.4640 3.8160 -0.4550 8 6 0.0347 4.8328 0.3830 9 6 -0.6645 6.0519 0.5096 10 1 -1.3372 6.3724 -0.2721 11 6 -0.4814 6.8503 1.6479 12 7 -0.0823 6.3090 2.7680 13 14 -0.8084 8.6874 1.5627 14 1 -2.1919 8.9659 2.0246 15 1 0.1580 9.4030 2.4341 16 1 -0.6510 9.1538 0.1616 17 6 1.2368 4.6310 1.0895 18 6 1.9065 3.4499 0.9674 19 6 2.1975 -1.2688 0.0006 20 6 1.8278 -2.0717 -1.2485 21 6 2.8559 -3.1842 -1.4620 22 6 4.2643 -2.6264 -1.2481 23 6 4.8796 -3.2604 0.0011 24 6 4.2642 -2.6256 1.2499 25 6 2.8558 -3.1832 1.4644 26 6 1.8278 -2.0706 1.2502 27 1 -0.3633 0.0958 -1.0232 28 1 -0.3633 -0.9339 0.4286 29 1 -0.3632 0.8383 0.5946 30 1 -0.1661 1.8602 -1.2170 31 1 -1.3829 3.9679 -1.0018 32 1 0.0447 6.8613 3.5553 33 1 1.6251 5.4091 1.7299 34 1 2.8258 3.2926 1.5118 35 1 3.2692 -1.0697 0.0000 36 1 0.8387 -2.5110 -1.1185 37 1 1.8211 -1.4116 -2.1159 38 1 2.7684 -3.5696 -2.4779 39 1 2.6724 -3.9897 -0.7509 40 1 4.2111 -1.5455 -1.1183 41 1 4.8826 -2.8583 -2.1153 42 1 5.9566 -3.0923 0.0011 43 1 4.6790 -4.3317 0.0015 44 1 4.2110 -1.5449 1.1194 45 1 4.8825 -2.8569 2.1172 46 1 2.7684 -3.5678 2.4806 47 1 2.6722 -3.9892 0.7539 48 1 1.8213 -1.4100 2.1171 49 1 0.8386 -2.5098 1.1207 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270240301.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:14 Heat of formation + Delta-G solvation = -34.727703 kcal Electronic energy + Delta-G solvation = -27009.503388 eV Core-core repulsion = 23514.222334 eV Total energy + Delta-G solvation = -3495.281053 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -41.52037 -39.90088 -38.69253 -36.44800 -35.66835 -33.74297 -33.10674 -31.84034 -31.27659 -28.18002 -27.94540 -26.88410 -26.45807 -23.60897 -22.87815 -22.55784 -21.64836 -20.98828 -19.74564 -19.37560 -18.15250 -17.64534 -17.15324 -16.32760 -16.21959 -15.80100 -15.61800 -15.13001 -15.09038 -15.01109 -14.88851 -14.47711 -14.16790 -14.14509 -13.91010 -13.74530 -13.55508 -13.33839 -12.98641 -12.84170 -12.73261 -12.65369 -12.54501 -12.30349 -12.18552 -12.15796 -11.98481 -11.81140 -11.70776 -11.35059 -11.32297 -11.04434 -10.83100 -10.60659 -10.59756 -9.62828 -9.48042 -9.38159 -8.82987 -6.43858 0.57209 1.13815 1.36296 1.42080 1.53992 1.97406 2.14712 2.22542 2.68077 3.60048 3.66028 3.90912 3.92126 4.04990 4.13542 4.17691 4.23321 4.27413 4.33943 4.34909 4.36268 4.38283 4.49152 4.71180 4.74200 4.79703 4.92836 4.95558 4.96075 4.98522 5.01700 5.02989 5.11545 5.14109 5.18024 5.21923 5.24616 5.27228 5.30997 5.36987 5.45845 5.59291 5.62789 5.65846 5.76771 5.81501 5.98932 6.02748 6.21246 6.53087 6.56175 6.78342 6.90853 7.37060 8.14117 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.029734 B = 0.002834 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.456324 B = 9879.394163 C =10094.249288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.608 5.608 3 C 0.571 3.429 4 O -0.603 6.603 5 C -0.287 4.287 6 C -0.040 4.040 7 C -0.247 4.247 8 C 0.102 3.898 9 C -0.480 4.480 10 H 0.090 0.910 11 C 0.041 3.959 12 N -0.798 5.798 13 Si 0.982 3.018 14 H -0.256 1.256 15 H -0.267 1.267 16 H -0.256 1.256 17 C -0.204 4.204 18 C -0.054 4.054 19 C 0.109 3.891 20 C -0.120 4.120 21 C -0.116 4.116 22 C -0.136 4.136 23 C -0.112 4.112 24 C -0.136 4.136 25 C -0.115 4.115 26 C -0.123 4.123 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.063 0.937 30 H 0.131 0.869 31 H 0.113 0.887 32 H 0.296 0.704 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.045 0.955 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.044 0.956 41 H 0.064 0.936 42 H 0.056 0.944 43 H 0.085 0.915 44 H 0.042 0.958 45 H 0.064 0.936 46 H 0.071 0.929 47 H 0.094 0.906 48 H 0.042 0.958 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.474 -17.522 -3.179 17.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.339 5.339 3 C 0.364 3.636 4 O -0.487 6.487 5 C -0.291 4.291 6 C -0.059 4.059 7 C -0.267 4.267 8 C 0.098 3.902 9 C -0.507 4.507 10 H 0.108 0.892 11 C -0.179 4.179 12 N -0.420 5.420 13 Si 0.801 3.199 14 H -0.180 1.180 15 H -0.191 1.191 16 H -0.180 1.180 17 C -0.223 4.223 18 C -0.074 4.074 19 C 0.007 3.993 20 C -0.158 4.158 21 C -0.153 4.153 22 C -0.173 4.173 23 C -0.149 4.149 24 C -0.173 4.173 25 C -0.153 4.153 26 C -0.161 4.161 27 H 0.085 0.915 28 H 0.111 0.889 29 H 0.081 0.919 30 H 0.149 0.851 31 H 0.131 0.869 32 H 0.107 0.893 33 H 0.115 0.885 34 H 0.104 0.896 35 H 0.123 0.877 36 H 0.102 0.898 37 H 0.064 0.936 38 H 0.091 0.909 39 H 0.110 0.890 40 H 0.063 0.937 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.103 0.897 44 H 0.061 0.939 45 H 0.082 0.918 46 H 0.090 0.910 47 H 0.112 0.888 48 H 0.060 0.940 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.112 -17.518 -2.972 17.803 hybrid contribution 0.092 1.404 0.370 1.455 sum 1.203 -16.113 -2.602 16.366 Atomic orbital electron populations 1.22089 0.78597 1.03729 1.02202 1.47900 1.07761 1.05130 1.73068 1.18627 0.86190 0.84607 0.74129 1.90600 1.16236 1.88295 1.53570 1.19078 1.01986 0.95970 1.12070 1.20823 0.92023 0.96885 0.96151 1.20890 1.02434 0.94858 1.08491 1.18049 0.90368 0.92417 0.89316 1.20057 1.23156 1.03338 1.04103 0.89215 1.26957 0.91656 1.05835 0.93475 1.69814 1.30557 1.40387 1.01290 0.85196 0.79448 0.75297 0.79929 1.18030 1.19123 1.17971 1.20762 0.97485 0.97449 1.06604 1.20406 0.97047 0.93358 0.96547 1.21967 0.98982 0.82227 0.96129 1.21928 1.00539 0.97355 0.96017 1.21799 0.92989 0.97739 1.02817 1.21861 0.97182 0.99832 0.98460 1.21668 0.99313 1.00475 0.93429 1.21858 0.97165 0.99721 0.98576 1.21795 0.92966 0.97723 1.02801 1.21950 1.00645 0.97453 0.96082 0.91517 0.88911 0.91859 0.85093 0.86873 0.89333 0.88485 0.89635 0.87742 0.89832 0.93572 0.90857 0.89030 0.93741 0.91685 0.92492 0.89657 0.93909 0.91766 0.91009 0.88829 0.93953 0.89747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.05 8.27 127.77 1.06 3.11 16 2 N -0.61 -20.33 2.76 -826.18 -2.28 -22.62 16 3 C 0.57 25.11 7.29 86.72 0.63 25.74 16 4 O -0.60 -30.20 16.30 -3.99 -0.07 -30.26 16 5 C -0.29 -13.50 5.17 -19.93 -0.10 -13.60 16 6 C -0.04 -1.73 7.53 22.25 0.17 -1.56 16 7 C -0.25 -11.57 9.73 22.47 0.22 -11.35 16 8 C 0.10 5.35 5.57 -21.28 -0.12 5.23 16 9 C -0.48 -24.55 9.01 23.46 0.21 -24.33 16 10 H 0.09 4.33 7.96 -2.91 -0.02 4.31 16 11 C 0.04 1.94 4.98 85.35 0.43 2.37 16 12 N -0.80 -40.05 11.30 21.87 0.25 -39.81 16 13 Si 0.98 35.87 29.62 68.60 2.03 37.91 16 14 H -0.26 -8.82 7.11 99.48 0.71 -8.12 16 15 H -0.27 -9.42 7.11 99.48 0.71 -8.71 16 16 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 17 C -0.20 -11.00 8.67 22.47 0.19 -10.80 16 18 C -0.05 -2.80 9.59 22.25 0.21 -2.59 16 19 C 0.11 2.98 1.91 45.00 0.09 3.07 16 20 C -0.12 -2.56 4.80 30.59 0.15 -2.42 16 21 C -0.12 -1.98 5.48 30.58 0.17 -1.81 16 22 C -0.14 -2.84 5.47 30.59 0.17 -2.67 16 23 C -0.11 -2.03 5.59 30.60 0.17 -1.86 16 24 C -0.14 -2.90 5.47 30.59 0.17 -2.73 16 25 C -0.12 -2.04 5.48 30.59 0.17 -1.88 16 26 C -0.12 -2.74 4.64 30.59 0.14 -2.60 16 27 H 0.07 1.59 6.90 -2.39 -0.02 1.58 16 28 H 0.09 1.89 6.80 -2.39 -0.02 1.87 16 29 H 0.06 2.02 5.94 -2.39 -0.01 2.00 16 30 H 0.13 4.61 5.56 -2.91 -0.02 4.60 16 31 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 32 H 0.30 13.27 8.29 -92.71 -0.77 12.50 16 33 H 0.10 5.42 6.32 -2.91 -0.02 5.40 16 34 H 0.09 4.39 8.06 -2.91 -0.02 4.36 16 35 H 0.11 3.42 1.60 -2.39 0.00 3.42 16 36 H 0.08 1.42 7.82 -2.38 -0.02 1.40 16 37 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.09 1.23 4.69 -2.39 -0.01 1.21 16 40 H 0.04 1.28 5.47 -2.39 -0.01 1.27 16 41 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.08 1.16 7.47 -2.39 -0.02 1.14 16 44 H 0.04 1.25 5.47 -2.39 -0.01 1.23 16 45 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.09 1.28 4.69 -2.39 -0.01 1.27 16 48 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.08 1.50 7.04 -2.39 -0.02 1.48 16 Total: -1.00 -64.13 361.08 5.01 -59.13 By element: Atomic # 1 Polarization: 35.38 SS G_CDS: 0.96 Total: 36.34 kcal Atomic # 6 Polarization: -44.80 SS G_CDS: 4.11 Total: -40.69 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: -2.03 Total: -62.42 kcal Atomic # 8 Polarization: -30.20 SS G_CDS: -0.07 Total: -30.26 kcal Atomic # 14 Polarization: 35.87 SS G_CDS: 2.03 Total: 37.91 kcal Total: -64.13 5.01 -59.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270240301.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.398 kcal (2) G-P(sol) polarization free energy of solvation -64.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds