Wall clock time and date at job start Tue Mar 31 2020 11:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46500 * 109.47149 * 2 1 4 4 C 1.46498 * 120.00371 * 274.08833 * 3 2 1 5 5 C 1.50700 * 109.47202 * 278.38229 * 4 3 2 6 6 H 1.08006 * 119.99984 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00296 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99578 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99990 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47060 * 60.00333 * 9 7 5 11 11 H 1.48506 * 109.46829 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47523 * 299.99768 * 9 7 5 13 13 C 1.34774 * 119.99690 * 94.08854 * 3 2 1 14 14 O 1.21282 * 120.00033 * 357.18461 * 13 3 2 15 15 C 1.50708 * 120.00080 * 177.46783 * 13 3 2 16 16 C 1.50700 * 110.01707 * 63.35228 * 15 13 3 17 17 C 1.38253 * 119.99863 * 187.27698 * 16 15 13 18 18 C 1.38212 * 119.99911 * 179.80690 * 17 16 15 19 19 C 1.38253 * 119.99973 * 0.42382 * 18 17 16 20 20 C 1.38211 * 120.00123 * 359.80352 * 19 18 17 21 21 C 1.50702 * 120.00434 * 179.97438 * 20 19 18 22 22 C 1.38210 * 119.99855 * 7.54343 * 16 15 13 23 23 C 1.53873 * 110.02874 * 301.96226 * 15 13 3 24 24 C 1.54374 * 106.54368 * 240.73234 * 23 15 13 25 25 C 1.54889 * 104.21740 * 23.56986 * 24 23 15 26 26 C 1.54266 * 110.02959 * 184.74254 * 15 13 3 27 27 H 1.08997 * 109.47792 * 64.88092 * 1 2 3 28 28 H 1.09001 * 109.47208 * 184.88505 * 1 2 3 29 29 H 1.09001 * 109.47084 * 304.88155 * 1 2 3 30 30 H 1.09005 * 109.47195 * 240.00777 * 2 1 3 31 31 H 1.08993 * 109.47476 * 120.00525 * 2 1 3 32 32 H 1.08999 * 109.46864 * 38.37895 * 4 3 2 33 33 H 1.08995 * 109.47140 * 158.37750 * 4 3 2 34 34 H 0.96997 * 119.99700 * 180.02562 * 8 7 5 35 35 H 1.08001 * 119.99938 * 359.97438 * 17 16 15 36 36 H 1.08006 * 119.99964 * 180.20190 * 18 17 16 37 37 H 1.08004 * 119.99882 * 179.79151 * 19 18 17 38 38 H 1.08998 * 109.46954 * 270.02479 * 21 20 19 39 39 H 1.08996 * 109.47015 * 30.02203 * 21 20 19 40 40 H 1.08999 * 109.47500 * 150.02416 * 21 20 19 41 41 H 1.08005 * 120.00242 * 359.97438 * 22 16 15 42 42 H 1.09003 * 110.03137 * 359.97438 * 23 15 13 43 43 H 1.08996 * 110.03694 * 121.43078 * 23 15 13 44 44 H 1.09008 * 110.45838 * 264.89923 * 24 23 15 45 45 H 1.09000 * 110.60622 * 142.32559 * 24 23 15 46 46 H 1.09002 * 110.76051 * 203.76291 * 25 24 23 47 47 H 1.09002 * 110.90944 * 80.46900 * 25 24 23 48 48 H 1.08996 * 110.48543 * 214.34687 * 26 15 13 49 49 H 1.08997 * 110.48861 * 336.86183 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1772 2.1020 -1.2654 5 6 3.4868 1.7152 -1.9029 6 1 4.1360 1.0039 -1.4140 7 6 3.8567 2.2702 -3.1096 8 7 3.0663 3.1367 -3.7046 9 14 5.4803 1.7912 -3.8993 10 1 5.4925 0.3290 -4.1582 11 1 5.6414 2.5218 -5.1822 12 1 6.5975 2.1416 -2.9860 13 6 2.3213 1.9887 1.1642 14 8 2.1416 1.4102 2.2149 15 6 2.8776 3.3894 1.1609 16 6 1.8637 4.3457 0.5877 17 6 2.2132 5.6617 0.3478 18 6 1.2845 6.5378 -0.1816 19 6 0.0035 6.1004 -0.4631 20 6 -0.3472 4.7860 -0.2189 21 6 -1.7436 4.3093 -0.5252 22 6 0.5830 3.9086 0.3070 23 6 4.1750 3.4392 0.3350 24 6 5.2927 3.8910 1.2992 25 6 4.7648 3.5022 2.7025 26 6 3.2511 3.8130 2.5964 27 1 -0.3634 0.4362 -0.9304 28 1 -0.3634 -1.0239 0.0875 29 1 -0.3633 0.5877 0.8430 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.3569 1.8448 -1.9356 33 1 2.1684 3.1753 -1.0758 34 1 3.3264 3.5268 -4.5538 35 1 3.2126 6.0044 0.5715 36 1 1.5584 7.5650 -0.3721 37 1 -0.7231 6.7858 -0.8737 38 1 -2.3761 4.4503 0.3513 39 1 -2.1477 4.8811 -1.3605 40 1 -1.7172 3.2517 -0.7878 41 1 0.3089 2.8815 0.4981 42 1 4.4024 2.4502 -0.0630 43 1 4.0717 4.1557 -0.4799 44 1 5.4408 4.9689 1.2325 45 1 6.2224 3.3649 1.0821 46 1 5.2317 4.1143 3.4741 47 1 4.9287 2.4429 2.9001 48 1 3.0696 4.8783 2.7392 49 1 2.6879 3.2300 3.3250 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270968921.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:01 Heat of formation + Delta-G solvation = -22.801325 kcal Electronic energy + Delta-G solvation = -28979.200470 eV Core-core repulsion = 25484.436584 eV Total energy + Delta-G solvation = -3494.763887 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 5.66 seconds Orbital eigenvalues (eV) -40.70894 -38.30868 -36.69746 -35.24452 -32.73932 -32.46551 -31.59294 -30.11316 -28.07740 -27.56954 -26.98508 -26.46771 -23.35329 -22.93365 -21.84329 -21.26162 -20.24733 -19.56453 -17.73966 -16.82331 -16.40675 -15.85519 -15.64140 -14.86664 -14.73388 -14.43299 -14.26789 -14.10808 -13.57070 -13.44509 -13.06896 -12.84628 -12.78754 -12.57915 -12.37054 -11.95442 -11.93280 -11.78707 -11.65102 -11.46438 -11.30648 -11.03583 -10.88067 -10.78063 -10.71798 -10.64237 -10.52313 -10.37466 -10.30166 -10.20978 -10.11530 -9.91922 -9.65346 -8.85467 -8.54375 -8.18564 -7.98442 -7.65728 -6.13149 -4.17753 1.81696 1.87995 3.24061 3.29650 3.30935 3.41393 3.95600 4.18434 4.35171 4.99277 5.03745 5.18146 5.19402 5.24887 5.34198 5.40572 5.56097 5.56961 5.70675 5.71547 5.82877 5.84537 5.90138 5.91903 5.99271 6.01088 6.04829 6.11117 6.12375 6.19187 6.29318 6.34946 6.39360 6.43506 6.48949 6.56175 6.59598 6.66743 6.68254 6.86224 6.88603 6.96005 7.04940 7.09191 7.24442 7.34758 7.47424 7.62648 7.78000 8.10842 8.40893 8.81593 9.04449 9.45617 10.92792 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.009434 B = 0.006880 C = 0.006537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2967.187876 B = 4068.640504 C = 4282.375767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.113 3.887 3 N -0.592 5.592 4 C 0.224 3.776 5 C -0.532 4.532 6 H 0.059 0.941 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.528 3.472 14 O -0.572 6.572 15 C -0.035 4.035 16 C -0.043 4.043 17 C -0.114 4.114 18 C -0.115 4.115 19 C -0.127 4.127 20 C -0.085 4.085 21 C -0.110 4.110 22 C -0.109 4.109 23 C -0.112 4.112 24 C -0.127 4.127 25 C -0.121 4.121 26 C -0.104 4.104 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.027 0.973 33 H 0.065 0.935 34 H 0.264 0.736 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.121 0.879 42 H 0.104 0.896 43 H 0.080 0.920 44 H 0.058 0.942 45 H 0.061 0.939 46 H 0.060 0.940 47 H 0.066 0.934 48 H 0.067 0.933 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.639 4.146 6.882 8.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.011 4.011 3 N -0.322 5.322 4 C 0.105 3.895 5 C -0.571 4.571 6 H 0.077 0.923 7 C -0.135 4.135 8 N -0.522 5.522 9 Si 0.715 3.285 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.200 1.200 13 C 0.316 3.684 14 O -0.454 6.454 15 C -0.038 4.038 16 C -0.043 4.043 17 C -0.132 4.132 18 C -0.133 4.133 19 C -0.145 4.145 20 C -0.085 4.085 21 C -0.167 4.167 22 C -0.127 4.127 23 C -0.149 4.149 24 C -0.165 4.165 25 C -0.159 4.159 26 C -0.142 4.142 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.045 0.955 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.137 0.863 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.139 0.861 42 H 0.122 0.878 43 H 0.099 0.901 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.084 0.916 48 H 0.085 0.915 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.768 3.948 7.201 9.035 hybrid contribution 0.943 -0.236 -0.942 1.354 sum -2.825 3.711 6.259 7.805 Atomic orbital electron populations 1.22110 0.97037 1.01186 1.01785 1.21234 0.93357 0.84076 1.02403 1.48258 1.62406 1.13333 1.08155 1.19833 0.96719 0.94072 0.78894 1.21350 1.04308 1.26114 1.05307 0.92276 1.24857 0.96966 0.94902 0.96747 1.69924 1.36644 1.28513 1.17120 0.86718 0.84258 0.78715 0.78783 1.20281 1.21229 1.20028 1.20209 0.76905 0.87883 0.83413 1.90555 1.56043 1.67154 1.31606 1.20294 0.95650 0.90978 0.96835 1.19433 0.93590 0.93741 0.97549 1.20804 0.99303 0.92866 1.00262 1.20953 0.93578 0.99226 0.99592 1.20864 0.96557 0.95256 1.01824 1.19759 0.95937 0.93752 0.99066 1.20736 0.93081 1.01720 1.01150 1.21093 0.92800 0.99521 0.99284 1.22663 0.89927 1.05878 0.96460 1.22474 0.98716 1.00264 0.95023 1.22463 0.95300 1.01178 0.96928 1.22390 0.96417 1.00758 0.94605 0.92550 0.92476 0.92987 0.90482 0.91150 0.95460 0.91741 0.92623 0.86297 0.86582 0.86795 0.91789 0.91793 0.91658 0.86103 0.87771 0.90144 0.92301 0.92005 0.92102 0.91571 0.91453 0.90007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 10.24 37.15 0.38 -2.25 16 2 C 0.11 2.11 6.15 -4.05 -0.02 2.09 16 3 N -0.59 -12.37 1.66 -175.07 -0.29 -12.66 16 4 C 0.22 5.22 3.58 -5.20 -0.02 5.20 16 5 C -0.53 -13.33 6.64 -34.44 -0.23 -13.55 16 6 H 0.06 1.51 7.38 -52.48 -0.39 1.12 16 7 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.88 -23.91 13.29 55.43 0.74 -23.17 16 9 Si 0.89 20.25 29.54 -169.99 -5.02 15.23 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 13 C 0.53 11.03 4.85 -10.98 -0.05 10.98 16 14 O -0.57 -12.84 14.91 5.56 0.08 -12.76 16 15 C -0.03 -0.65 0.47 -155.69 -0.07 -0.72 16 16 C -0.04 -0.79 2.97 -104.63 -0.31 -1.10 16 17 C -0.11 -1.93 8.09 -39.59 -0.32 -2.25 16 18 C -0.12 -1.80 10.05 -39.59 -0.40 -2.19 16 19 C -0.13 -1.97 9.70 -39.59 -0.38 -2.36 16 20 C -0.09 -1.42 5.88 -104.62 -0.62 -2.04 16 21 C -0.11 -1.51 10.01 36.01 0.36 -1.15 16 22 C -0.11 -2.03 6.89 -39.58 -0.27 -2.31 16 23 C -0.11 -2.17 3.75 -25.56 -0.10 -2.26 16 24 C -0.13 -2.03 6.83 -25.01 -0.17 -2.20 16 25 C -0.12 -1.85 6.91 -24.74 -0.17 -2.02 16 26 C -0.10 -1.73 5.68 -25.07 -0.14 -1.87 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.08 1.44 8.10 -51.93 -0.42 1.02 16 31 H 0.07 1.32 7.34 -51.93 -0.38 0.94 16 32 H 0.03 0.69 8.13 -51.93 -0.42 0.27 16 33 H 0.06 1.55 3.43 -51.93 -0.18 1.37 16 34 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 35 H 0.12 1.83 7.77 -52.49 -0.41 1.43 16 36 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 37 H 0.11 1.48 8.06 -52.48 -0.42 1.05 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.79 8.09 -51.93 -0.42 0.37 16 40 H 0.06 0.92 8.09 -51.93 -0.42 0.50 16 41 H 0.12 2.37 5.92 -52.48 -0.31 2.06 16 42 H 0.10 2.29 4.74 -51.93 -0.25 2.05 16 43 H 0.08 1.69 6.75 -51.93 -0.35 1.34 16 44 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 48 H 0.07 1.02 7.38 -51.93 -0.38 0.63 16 49 H 0.08 1.46 6.78 -51.93 -0.35 1.11 16 LS Contribution 374.29 15.07 5.64 5.64 Total: -1.00 -27.96 374.29 -9.53 -37.49 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -8.04 Total: 8.58 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: -2.63 Total: -18.34 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.45 Total: -35.84 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: 0.08 Total: -12.76 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -27.96 -9.53 -37.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270968921.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.684 kcal (2) G-P(sol) polarization free energy of solvation -27.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.66 seconds