Wall clock time and date at job start Tue Mar 31 2020 11:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46500 * 109.47149 * 2 1 4 4 C 1.46498 * 120.00371 * 274.08833 * 3 2 1 5 5 C 1.50700 * 109.47202 * 278.38229 * 4 3 2 6 6 H 1.08006 * 119.99984 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00296 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99578 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99990 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47060 * 60.00333 * 9 7 5 11 11 H 1.48506 * 109.46829 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47523 * 299.99768 * 9 7 5 13 13 C 1.34774 * 119.99690 * 94.08854 * 3 2 1 14 14 O 1.21282 * 120.00033 * 357.18461 * 13 3 2 15 15 C 1.50708 * 120.00080 * 177.46783 * 13 3 2 16 16 C 1.50700 * 110.01707 * 63.35228 * 15 13 3 17 17 C 1.38253 * 119.99863 * 187.27698 * 16 15 13 18 18 C 1.38212 * 119.99911 * 179.80690 * 17 16 15 19 19 C 1.38253 * 119.99973 * 0.42382 * 18 17 16 20 20 C 1.38211 * 120.00123 * 359.80352 * 19 18 17 21 21 C 1.50702 * 120.00434 * 179.97438 * 20 19 18 22 22 C 1.38210 * 119.99855 * 7.54343 * 16 15 13 23 23 C 1.53873 * 110.02874 * 301.96226 * 15 13 3 24 24 C 1.54374 * 106.54368 * 240.73234 * 23 15 13 25 25 C 1.54889 * 104.21740 * 23.56986 * 24 23 15 26 26 C 1.54266 * 110.02959 * 184.74254 * 15 13 3 27 27 H 1.08997 * 109.47792 * 64.88092 * 1 2 3 28 28 H 1.09001 * 109.47208 * 184.88505 * 1 2 3 29 29 H 1.09001 * 109.47084 * 304.88155 * 1 2 3 30 30 H 1.09005 * 109.47195 * 240.00777 * 2 1 3 31 31 H 1.08993 * 109.47476 * 120.00525 * 2 1 3 32 32 H 1.08999 * 109.46864 * 38.37895 * 4 3 2 33 33 H 1.08995 * 109.47140 * 158.37750 * 4 3 2 34 34 H 0.96997 * 119.99700 * 180.02562 * 8 7 5 35 35 H 1.08001 * 119.99938 * 359.97438 * 17 16 15 36 36 H 1.08006 * 119.99964 * 180.20190 * 18 17 16 37 37 H 1.08004 * 119.99882 * 179.79151 * 19 18 17 38 38 H 1.08998 * 109.46954 * 270.02479 * 21 20 19 39 39 H 1.08996 * 109.47015 * 30.02203 * 21 20 19 40 40 H 1.08999 * 109.47500 * 150.02416 * 21 20 19 41 41 H 1.08005 * 120.00242 * 359.97438 * 22 16 15 42 42 H 1.09003 * 110.03137 * 359.97438 * 23 15 13 43 43 H 1.08996 * 110.03694 * 121.43078 * 23 15 13 44 44 H 1.09008 * 110.45838 * 264.89923 * 24 23 15 45 45 H 1.09000 * 110.60622 * 142.32559 * 24 23 15 46 46 H 1.09002 * 110.76051 * 203.76291 * 25 24 23 47 47 H 1.09002 * 110.90944 * 80.46900 * 25 24 23 48 48 H 1.08996 * 110.48543 * 214.34687 * 26 15 13 49 49 H 1.08997 * 110.48861 * 336.86183 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1772 2.1020 -1.2654 5 6 3.4868 1.7152 -1.9029 6 1 4.1360 1.0039 -1.4140 7 6 3.8567 2.2702 -3.1096 8 7 3.0663 3.1367 -3.7046 9 14 5.4803 1.7912 -3.8993 10 1 5.4925 0.3290 -4.1582 11 1 5.6414 2.5218 -5.1822 12 1 6.5975 2.1416 -2.9860 13 6 2.3213 1.9887 1.1642 14 8 2.1416 1.4102 2.2149 15 6 2.8776 3.3894 1.1609 16 6 1.8637 4.3457 0.5877 17 6 2.2132 5.6617 0.3478 18 6 1.2845 6.5378 -0.1816 19 6 0.0035 6.1004 -0.4631 20 6 -0.3472 4.7860 -0.2189 21 6 -1.7436 4.3093 -0.5252 22 6 0.5830 3.9086 0.3070 23 6 4.1750 3.4392 0.3350 24 6 5.2927 3.8910 1.2992 25 6 4.7648 3.5022 2.7025 26 6 3.2511 3.8130 2.5964 27 1 -0.3634 0.4362 -0.9304 28 1 -0.3634 -1.0239 0.0875 29 1 -0.3633 0.5877 0.8430 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.3569 1.8448 -1.9356 33 1 2.1684 3.1753 -1.0758 34 1 3.3264 3.5268 -4.5538 35 1 3.2126 6.0044 0.5715 36 1 1.5584 7.5650 -0.3721 37 1 -0.7231 6.7858 -0.8737 38 1 -2.3761 4.4503 0.3513 39 1 -2.1477 4.8811 -1.3605 40 1 -1.7172 3.2517 -0.7878 41 1 0.3089 2.8815 0.4981 42 1 4.4024 2.4502 -0.0630 43 1 4.0717 4.1557 -0.4799 44 1 5.4408 4.9689 1.2325 45 1 6.2224 3.3649 1.0821 46 1 5.2317 4.1143 3.4741 47 1 4.9287 2.4429 2.9001 48 1 3.0696 4.8783 2.7392 49 1 2.6879 3.2300 3.3250 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270968921.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:00 Heat of formation + Delta-G solvation = -34.093700 kcal Electronic energy + Delta-G solvation = -28979.690145 eV Core-core repulsion = 25484.436584 eV Total energy + Delta-G solvation = -3495.253561 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.21186 -39.72178 -38.11946 -36.98342 -34.65198 -33.72334 -32.94481 -31.61886 -29.50927 -29.04798 -28.71390 -27.68287 -24.96532 -24.70045 -23.16105 -22.61025 -21.57974 -21.02804 -19.35987 -18.51023 -18.11009 -17.30992 -17.29084 -16.41880 -16.20797 -15.96834 -15.64394 -15.53245 -15.05594 -14.71914 -14.51889 -14.28584 -14.19111 -14.15188 -13.85218 -13.53667 -13.30226 -13.13017 -13.05758 -12.98577 -12.88873 -12.66088 -12.53751 -12.34229 -12.16608 -12.00015 -11.94764 -11.83028 -11.77153 -11.73279 -11.59452 -11.50709 -11.30749 -10.58702 -10.43838 -9.51566 -9.42051 -9.29635 -8.12697 -6.22600 0.52980 0.58246 1.41221 1.42696 1.48948 1.74867 2.31109 2.47062 2.89829 3.16504 3.57630 3.66241 3.81918 3.96093 4.06327 4.11689 4.20030 4.30708 4.33844 4.37792 4.50916 4.53325 4.61513 4.65043 4.67662 4.69727 4.80767 4.82109 4.85896 4.88645 4.94777 5.00202 5.06374 5.08628 5.14295 5.19608 5.20120 5.25856 5.34383 5.38754 5.39289 5.46721 5.63603 5.66836 5.73872 5.74374 5.78736 5.90473 6.13548 6.22001 6.62636 6.86637 7.32121 7.46015 8.92216 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.009434 B = 0.006880 C = 0.006537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2967.187876 B = 4068.640504 C = 4282.375767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.106 3.894 3 N -0.594 5.594 4 C 0.245 3.755 5 C -0.532 4.532 6 H 0.049 0.951 7 C 0.030 3.970 8 N -0.912 5.912 9 Si 0.941 3.059 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.269 1.269 13 C 0.524 3.476 14 O -0.593 6.593 15 C -0.035 4.035 16 C -0.061 4.061 17 C -0.125 4.125 18 C -0.115 4.115 19 C -0.130 4.130 20 C -0.096 4.096 21 C -0.108 4.108 22 C -0.135 4.135 23 C -0.106 4.106 24 C -0.121 4.121 25 C -0.114 4.114 26 C -0.100 4.100 27 H 0.050 0.950 28 H 0.087 0.913 29 H 0.043 0.957 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.000 1.000 33 H 0.062 0.938 34 H 0.264 0.736 35 H 0.133 0.867 36 H 0.148 0.852 37 H 0.144 0.856 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.052 0.948 41 H 0.101 0.899 42 H 0.071 0.929 43 H 0.060 0.940 44 H 0.082 0.918 45 H 0.065 0.935 46 H 0.094 0.906 47 H 0.050 0.950 48 H 0.086 0.914 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.267 5.741 7.204 9.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.017 4.017 3 N -0.324 5.324 4 C 0.125 3.875 5 C -0.570 4.570 6 H 0.068 0.932 7 C -0.171 4.171 8 N -0.551 5.551 9 Si 0.767 3.233 10 H -0.202 1.202 11 H -0.209 1.209 12 H -0.194 1.194 13 C 0.313 3.687 14 O -0.476 6.476 15 C -0.037 4.037 16 C -0.061 4.061 17 C -0.143 4.143 18 C -0.133 4.133 19 C -0.148 4.148 20 C -0.096 4.096 21 C -0.165 4.165 22 C -0.153 4.153 23 C -0.144 4.144 24 C -0.159 4.159 25 C -0.151 4.151 26 C -0.137 4.137 27 H 0.069 0.931 28 H 0.106 0.894 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.018 0.982 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.151 0.849 36 H 0.166 0.834 37 H 0.162 0.838 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.071 0.929 41 H 0.119 0.881 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.101 0.899 45 H 0.084 0.916 46 H 0.112 0.888 47 H 0.069 0.931 48 H 0.105 0.895 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.396 5.526 7.530 9.938 hybrid contribution 0.766 -0.758 -1.038 1.497 sum -2.629 4.768 6.492 8.473 Atomic orbital electron populations 1.21992 0.94888 1.02895 1.01050 1.21392 0.95190 0.83097 1.02054 1.48248 1.62554 1.13981 1.07583 1.19435 0.94848 0.94080 0.79126 1.21465 1.04657 1.25546 1.05351 0.93241 1.25445 0.99585 0.94896 0.97168 1.70019 1.38087 1.29553 1.17458 0.85867 0.81114 0.78301 0.78006 1.20185 1.20944 1.19447 1.20641 0.76382 0.88759 0.82887 1.90528 1.57041 1.67946 1.32036 1.20330 0.95430 0.89749 0.98237 1.19518 0.93474 0.94558 0.98576 1.21032 1.00383 0.92365 1.00510 1.21378 0.93244 1.00493 0.98153 1.21264 0.97350 0.95134 1.01068 1.20140 0.96842 0.94256 0.98390 1.20771 0.91953 1.01143 1.02604 1.21088 0.93827 0.99152 1.01256 1.22473 0.91702 1.03411 0.96813 1.22460 0.97430 1.01722 0.94248 1.22433 0.94332 1.00890 0.97460 1.22385 0.97182 1.01561 0.92608 0.93127 0.89430 0.93825 0.90873 0.91306 0.98193 0.91996 0.92661 0.84942 0.83439 0.83806 0.89924 0.90083 0.92857 0.88132 0.91023 0.92118 0.89938 0.91576 0.88776 0.93133 0.89499 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.93 10.24 71.98 0.74 -4.19 16 2 C 0.11 4.09 6.15 86.38 0.53 4.62 16 3 N -0.59 -25.91 1.66 -826.18 -1.38 -27.28 16 4 C 0.25 11.88 3.58 85.63 0.31 12.19 16 5 C -0.53 -27.34 6.64 25.60 0.17 -27.17 16 6 H 0.05 2.60 7.38 -2.91 -0.02 2.58 16 7 C 0.03 1.55 5.46 84.65 0.46 2.01 16 8 N -0.91 -49.92 13.29 21.45 0.28 -49.64 16 9 Si 0.94 41.65 29.54 68.60 2.03 43.68 16 10 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 12 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 13 C 0.52 22.66 4.85 87.66 0.42 23.08 16 14 O -0.59 -27.42 14.91 -3.03 -0.05 -27.46 16 15 C -0.03 -1.31 0.47 -52.95 -0.02 -1.34 16 16 C -0.06 -2.27 2.97 -19.87 -0.06 -2.33 16 17 C -0.12 -4.07 8.09 22.27 0.18 -3.89 16 18 C -0.11 -3.31 10.05 22.27 0.22 -3.09 16 19 C -0.13 -3.78 9.70 22.27 0.22 -3.56 16 20 C -0.10 -3.16 5.88 -19.86 -0.12 -3.28 16 21 C -0.11 -2.87 10.01 71.24 0.71 -2.16 16 22 C -0.13 -5.15 6.89 22.27 0.15 -5.00 16 23 C -0.11 -4.14 3.75 31.36 0.12 -4.02 16 24 C -0.12 -3.67 6.83 31.71 0.22 -3.45 16 25 C -0.11 -3.28 6.91 31.89 0.22 -3.06 16 26 C -0.10 -3.24 5.68 31.67 0.18 -3.06 16 27 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.07 2.84 8.10 -2.38 -0.02 2.82 16 31 H 0.07 2.67 7.34 -2.39 -0.02 2.65 16 32 H 0.00 0.00 8.13 -2.39 -0.02 -0.02 16 33 H 0.06 3.08 3.43 -2.39 -0.01 3.07 16 34 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 35 H 0.13 3.83 7.77 -2.91 -0.02 3.81 16 36 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 37 H 0.14 3.24 8.06 -2.91 -0.02 3.21 16 38 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.08 1.84 8.09 -2.39 -0.02 1.83 16 40 H 0.05 1.52 8.09 -2.39 -0.02 1.50 16 41 H 0.10 4.15 5.92 -2.91 -0.02 4.13 16 42 H 0.07 3.24 4.74 -2.39 -0.01 3.23 16 43 H 0.06 2.57 6.75 -2.39 -0.02 2.55 16 44 H 0.08 2.12 8.14 -2.38 -0.02 2.11 16 45 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 46 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 48 H 0.09 2.46 7.38 -2.39 -0.02 2.44 16 49 H 0.07 2.36 6.78 -2.39 -0.02 2.34 16 Total: -1.00 -61.42 374.29 6.47 -54.96 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: 0.92 Total: 33.47 kcal Atomic # 6 Polarization: -32.36 SS G_CDS: 4.65 Total: -27.71 kcal Atomic # 7 Polarization: -75.83 SS G_CDS: -1.09 Total: -76.92 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.05 Total: -27.46 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -61.42 6.47 -54.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270968921.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.862 kcal (2) G-P(sol) polarization free energy of solvation -61.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds