Wall clock time and date at job start Tue Mar 31 2020 10:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.23159 * 2 1 4 4 C 1.53933 * 110.25578 * 238.04353 * 2 1 3 5 5 N 1.48008 * 106.29999 * 223.54601 * 4 2 1 6 6 C 1.46906 * 110.99557 * 150.61774 * 5 4 2 7 7 C 1.50704 * 109.46728 * 72.78116 * 6 5 4 8 8 C 1.38295 * 119.92831 * 269.72227 * 7 6 5 9 9 C 1.38101 * 120.06421 * 179.73100 * 8 7 6 10 10 C 1.38879 * 119.93288 * 0.52458 * 9 8 7 11 11 O 1.35747 * 120.07000 * 179.72898 * 10 9 8 12 12 C 1.34830 * 117.00205 * 174.48763 * 11 10 9 13 13 H 1.08008 * 119.99834 * 5.05559 * 12 11 10 14 14 C 1.38653 * 120.00080 * 185.05657 * 12 11 10 15 15 N 1.31550 * 120.00312 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99654 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47623 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.47331 * 120.00199 * 16 14 12 19 19 H 1.48507 * 109.47403 * 239.99842 * 16 14 12 20 20 C 1.38882 * 119.85966 * 359.75032 * 10 9 8 21 21 C 1.38095 * 119.93135 * 359.97438 * 20 10 9 22 22 C 1.47042 * 105.67763 * 30.19516 * 5 4 2 23 23 H 1.09001 * 105.63725 * 81.20557 * 22 5 4 24 24 C 1.49993 * 113.27912 * 196.95673 * 22 5 4 25 25 C 1.50651 * 113.88076 * 87.63430 * 24 22 5 26 26 C 1.53281 * 107.95350 * 55.89894 * 25 24 22 27 27 C 1.52265 * 108.49942 * 293.97762 * 26 25 24 28 28 C 1.51269 * 107.67344 * 328.38860 * 22 5 4 29 29 H 1.09000 * 109.63034 * 137.76019 * 28 22 5 30 30 H 1.08998 * 109.47283 * 180.50557 * 1 2 3 31 31 H 1.09006 * 109.46868 * 300.50149 * 1 2 3 32 32 H 1.09003 * 109.47249 * 60.49959 * 1 2 3 33 33 H 1.08999 * 110.08865 * 104.33865 * 4 2 1 34 34 H 1.09003 * 110.13920 * 342.78267 * 4 2 1 35 35 H 1.09001 * 109.46653 * 192.77738 * 6 5 4 36 36 H 1.08994 * 109.47119 * 312.77738 * 6 5 4 37 37 H 1.08002 * 119.96619 * 359.97438 * 8 7 6 38 38 H 1.08007 * 120.03528 * 180.27100 * 9 8 7 39 39 H 0.96996 * 120.00372 * 179.97438 * 15 14 12 40 40 H 1.07998 * 120.03008 * 180.02562 * 20 10 9 41 41 H 1.07997 * 119.96539 * 180.02562 * 21 20 10 42 42 H 1.09005 * 108.81238 * 208.87251 * 24 22 5 43 43 H 1.09000 * 108.80918 * 327.15242 * 24 22 5 44 44 H 1.09000 * 109.61829 * 296.41956 * 25 24 22 45 45 H 1.08993 * 110.02580 * 175.62374 * 25 24 22 46 46 H 1.08999 * 109.63250 * 174.27627 * 26 25 24 47 47 H 1.09007 * 109.79699 * 53.78199 * 26 25 24 48 48 H 1.09002 * 108.89526 * 298.37771 * 27 26 25 49 49 H 1.08994 * 108.89559 * 179.88638 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9069 1.0228 0.0000 4 6 2.0629 -0.7643 -1.2253 5 7 3.1727 -1.6123 -0.7355 6 6 3.3015 -2.8307 -1.5461 7 6 3.8804 -2.4794 -2.8924 8 6 3.0398 -2.1542 -3.9413 9 6 3.5675 -1.8264 -5.1748 10 6 4.9433 -1.8341 -5.3641 11 8 5.4648 -1.5177 -6.5768 12 6 6.8077 -1.4330 -6.6625 13 1 7.4205 -1.6931 -5.8120 14 6 7.4019 -1.0121 -7.8424 15 7 6.6555 -0.6948 -8.8782 16 14 9.2624 -0.8941 -7.9608 17 1 9.8677 -1.3032 -6.6679 18 1 9.7477 -1.7915 -9.0399 19 1 9.6511 0.5057 -8.2690 20 6 5.7845 -2.1666 -4.3102 21 6 5.2509 -2.4879 -3.0777 22 6 2.8374 -1.9397 0.6583 23 1 2.1294 -2.7667 0.6036 24 6 4.0088 -2.4454 1.4467 25 6 4.8219 -1.3567 2.0973 26 6 3.8800 -0.5229 2.9732 27 6 2.8864 0.1932 2.0686 28 6 2.0664 -0.7714 1.2317 29 1 1.2299 -1.1405 1.8251 30 1 -0.3634 -1.0276 0.0091 31 1 -0.3633 0.5216 0.8855 32 1 -0.3634 0.5061 -0.8944 33 1 2.4303 -0.0623 -1.9737 34 1 1.2758 -1.3868 -1.6508 35 1 3.9608 -3.5358 -1.0398 36 1 2.3192 -3.2836 -1.6799 37 1 1.9698 -2.1528 -3.7947 38 1 2.9108 -1.5683 -5.9924 39 1 7.0711 -0.3999 -9.7035 40 1 6.8548 -2.1731 -4.4543 41 1 5.9046 -2.7462 -2.2577 42 1 3.6456 -3.1184 2.2235 43 1 4.6664 -3.0036 0.7803 44 1 5.2668 -0.7237 1.3295 45 1 5.6065 -1.7947 2.7140 46 1 4.4570 0.2105 3.5364 47 1 3.3436 -1.1748 3.6629 48 1 3.4330 0.8613 1.4030 49 1 2.2118 0.7868 2.6854 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272904812.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:06 Heat of formation + Delta-G solvation = -17.204846 kcal Electronic energy + Delta-G solvation = -26594.318410 eV Core-core repulsion = 23099.797205 eV Total energy + Delta-G solvation = -3494.521205 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.56173 -38.92813 -36.84322 -35.64831 -34.13196 -32.27266 -30.64021 -30.14243 -29.80114 -28.74404 -26.43547 -25.27385 -23.82793 -22.79249 -22.07141 -21.81332 -20.47558 -20.09399 -18.65392 -17.93578 -16.94860 -16.16079 -15.49268 -15.14153 -14.69755 -14.55067 -14.46782 -14.34086 -14.18857 -13.61939 -13.55753 -13.30844 -13.28808 -13.02318 -12.67661 -12.44330 -12.40185 -12.27986 -12.12974 -11.69121 -11.62166 -11.42944 -11.28380 -11.23017 -10.92822 -10.75378 -10.71092 -10.53674 -10.49964 -10.46338 -10.38099 -10.14130 -10.05878 -9.28231 -8.80468 -8.19375 -8.10656 -7.12539 -6.42242 -4.00785 2.27138 2.34458 3.13978 3.15847 3.21336 3.98737 4.01400 4.35735 4.43282 4.58205 4.76963 4.86636 4.88274 5.05997 5.12982 5.20184 5.21346 5.29471 5.30151 5.35992 5.38704 5.44909 5.48275 5.55011 5.58834 5.66753 5.74689 5.77289 5.79732 5.81744 5.87949 5.92374 5.92762 6.01304 6.09607 6.14650 6.21967 6.24704 6.25355 6.29994 6.36516 6.47353 6.75075 6.94671 7.07590 7.10400 7.24021 7.31784 7.46955 7.49613 7.88080 8.03407 9.03865 9.74802 10.76089 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.018944 B = 0.002886 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.703767 B = 9698.305405 C =10351.715938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.100 4.100 3 H 0.080 0.920 4 C 0.047 3.953 5 N -0.506 5.506 6 C 0.107 3.893 7 C -0.174 4.174 8 C -0.067 4.067 9 C -0.194 4.194 10 C 0.155 3.845 11 O -0.180 6.180 12 C -0.390 4.390 13 H 0.092 0.908 14 C 0.038 3.962 15 N -0.864 5.864 16 Si 0.940 3.060 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.276 1.276 20 C -0.235 4.235 21 C -0.050 4.050 22 C 0.084 3.916 23 H 0.023 0.977 24 C -0.101 4.101 25 C -0.114 4.114 26 C -0.118 4.118 27 C -0.107 4.107 28 C -0.076 4.076 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.042 0.958 35 H 0.072 0.928 36 H 0.032 0.968 37 H 0.105 0.895 38 H 0.115 0.885 39 H 0.269 0.731 40 H 0.126 0.874 41 H 0.105 0.895 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.071 0.929 45 H 0.059 0.941 46 H 0.059 0.941 47 H 0.057 0.943 48 H 0.065 0.935 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.696 -0.956 21.721 23.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 H 0.099 0.901 4 C -0.081 4.081 5 N -0.230 5.230 6 C -0.019 4.019 7 C -0.175 4.175 8 C -0.086 4.086 9 C -0.213 4.213 10 C 0.102 3.898 11 O -0.083 6.083 12 C -0.466 4.466 13 H 0.110 0.890 14 C -0.166 4.166 15 N -0.499 5.499 16 Si 0.765 3.235 17 H -0.191 1.191 18 H -0.202 1.202 19 H -0.202 1.202 20 C -0.254 4.254 21 C -0.069 4.069 22 C -0.024 4.024 23 H 0.041 0.959 24 C -0.139 4.139 25 C -0.151 4.151 26 C -0.156 4.156 27 C -0.144 4.144 28 C -0.095 4.095 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.060 0.940 35 H 0.090 0.910 36 H 0.051 0.949 37 H 0.123 0.877 38 H 0.133 0.867 39 H 0.079 0.921 40 H 0.143 0.857 41 H 0.123 0.877 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.084 0.916 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.277 -0.587 21.216 22.781 hybrid contribution 0.148 -0.413 -0.128 0.457 sum -8.129 -1.000 21.088 22.623 Atomic orbital electron populations 1.21874 0.94904 1.01578 1.01742 1.22258 0.95334 1.00027 0.94293 0.90126 1.22906 0.91909 0.96467 0.96778 1.64042 1.41789 1.16731 1.00474 1.20968 0.98627 0.90586 0.91767 1.19025 0.93523 1.11014 0.93964 1.20452 0.97807 0.98134 0.92212 1.20157 0.92641 1.10554 0.97937 1.19379 0.92449 0.92077 0.85928 1.83974 1.23955 1.75889 1.24527 1.21376 0.78663 1.46337 1.00267 0.89036 1.25279 1.00460 0.96259 0.94558 1.70045 1.35614 1.41604 1.02664 0.85659 0.80742 0.78316 0.78782 1.19084 1.20192 1.20150 1.21151 1.00373 1.10098 0.93762 1.20534 0.93889 0.96801 0.95675 1.20826 0.95457 0.96130 0.90002 0.95929 1.20382 0.96675 0.98202 0.98599 1.21098 0.97344 0.97791 0.98909 1.21448 0.97421 0.99085 0.97616 1.21188 0.97620 0.97711 0.97884 1.21131 0.97440 0.94982 0.95914 0.91140 0.92917 0.92665 0.92402 0.90023 0.93970 0.90981 0.94939 0.87701 0.86738 0.92128 0.85680 0.87663 0.92480 0.91486 0.91038 0.92269 0.92212 0.92401 0.91641 0.92595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.82 37.16 0.33 -0.90 16 2 C -0.10 -1.01 3.20 -89.12 -0.29 -1.30 16 3 H 0.08 0.84 7.29 -51.93 -0.38 0.46 16 4 C 0.05 0.59 5.28 -2.73 -0.01 0.58 16 5 N -0.51 -6.66 5.07 -229.27 -1.16 -7.83 16 6 C 0.11 1.50 4.70 -4.97 -0.02 1.48 16 7 C -0.17 -3.01 5.16 -104.57 -0.54 -3.55 16 8 C -0.07 -1.21 9.07 -39.61 -0.36 -1.57 16 9 C -0.19 -4.15 9.99 -39.39 -0.39 -4.54 16 10 C 0.16 3.81 6.65 -39.11 -0.26 3.55 16 11 O -0.18 -5.21 9.76 0.06 0.00 -5.21 16 12 C -0.39 -11.05 9.49 30.89 0.29 -10.75 16 13 H 0.09 2.41 5.20 -52.48 -0.27 2.14 16 14 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 15 N -0.86 -25.60 13.67 55.48 0.76 -24.84 16 16 Si 0.94 20.76 29.55 -169.99 -5.02 15.74 16 17 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 18 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 19 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 20 C -0.23 -5.19 9.17 -39.40 -0.36 -5.55 16 21 C -0.05 -0.94 9.69 -39.61 -0.38 -1.33 16 22 C 0.08 0.93 2.11 -70.00 -0.15 0.78 16 23 H 0.02 0.25 7.69 -51.93 -0.40 -0.15 16 24 C -0.10 -1.02 5.31 -29.40 -0.16 -1.17 16 25 C -0.11 -1.09 5.98 -27.76 -0.17 -1.26 16 26 C -0.12 -1.00 5.93 -26.96 -0.16 -1.16 16 27 C -0.11 -0.96 5.09 -27.73 -0.14 -1.10 16 28 C -0.08 -0.73 2.85 -91.11 -0.26 -0.99 16 29 H 0.07 0.63 7.68 -51.93 -0.40 0.23 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.04 0.52 7.15 -51.93 -0.37 0.15 16 35 H 0.07 0.95 6.79 -51.93 -0.35 0.60 16 36 H 0.03 0.43 7.68 -51.93 -0.40 0.04 16 37 H 0.10 1.62 7.98 -52.49 -0.42 1.20 16 38 H 0.11 2.38 8.06 -52.48 -0.42 1.96 16 39 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.13 2.79 5.64 -52.49 -0.30 2.49 16 41 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.74 6.81 -51.93 -0.35 0.38 16 44 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.45 8.13 -51.92 -0.42 0.03 16 48 H 0.06 0.67 7.50 -51.93 -0.39 0.28 16 49 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 376.62 15.07 5.68 5.68 Total: -1.00 -30.02 376.62 -11.12 -41.13 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -8.24 Total: 3.15 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: -3.13 Total: -27.82 kcal Atomic # 7 Polarization: -32.27 SS G_CDS: -0.40 Total: -32.67 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: 0.00 Total: -5.21 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.02 -11.12 -41.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272904812.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.928 kcal (2) G-P(sol) polarization free energy of solvation -30.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds