Wall clock time and date at job start Tue Mar 31 2020 10:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.23159 * 2 1 4 4 C 1.53933 * 110.25578 * 238.04353 * 2 1 3 5 5 N 1.48008 * 106.29999 * 223.54601 * 4 2 1 6 6 C 1.46906 * 110.99557 * 150.61774 * 5 4 2 7 7 C 1.50704 * 109.46728 * 72.78116 * 6 5 4 8 8 C 1.38295 * 119.92831 * 269.72227 * 7 6 5 9 9 C 1.38101 * 120.06421 * 179.73100 * 8 7 6 10 10 C 1.38879 * 119.93288 * 0.52458 * 9 8 7 11 11 O 1.35747 * 120.07000 * 179.72898 * 10 9 8 12 12 C 1.34830 * 117.00205 * 174.48763 * 11 10 9 13 13 H 1.08008 * 119.99834 * 5.05559 * 12 11 10 14 14 C 1.38653 * 120.00080 * 185.05657 * 12 11 10 15 15 N 1.31550 * 120.00312 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99654 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47623 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.47331 * 120.00199 * 16 14 12 19 19 H 1.48507 * 109.47403 * 239.99842 * 16 14 12 20 20 C 1.38882 * 119.85966 * 359.75032 * 10 9 8 21 21 C 1.38095 * 119.93135 * 359.97438 * 20 10 9 22 22 C 1.47042 * 105.67763 * 30.19516 * 5 4 2 23 23 H 1.09001 * 105.63725 * 81.20557 * 22 5 4 24 24 C 1.49993 * 113.27912 * 196.95673 * 22 5 4 25 25 C 1.50651 * 113.88076 * 87.63430 * 24 22 5 26 26 C 1.53281 * 107.95350 * 55.89894 * 25 24 22 27 27 C 1.52265 * 108.49942 * 293.97762 * 26 25 24 28 28 C 1.51269 * 107.67344 * 328.38860 * 22 5 4 29 29 H 1.09000 * 109.63034 * 137.76019 * 28 22 5 30 30 H 1.08998 * 109.47283 * 180.50557 * 1 2 3 31 31 H 1.09006 * 109.46868 * 300.50149 * 1 2 3 32 32 H 1.09003 * 109.47249 * 60.49959 * 1 2 3 33 33 H 1.08999 * 110.08865 * 104.33865 * 4 2 1 34 34 H 1.09003 * 110.13920 * 342.78267 * 4 2 1 35 35 H 1.09001 * 109.46653 * 192.77738 * 6 5 4 36 36 H 1.08994 * 109.47119 * 312.77738 * 6 5 4 37 37 H 1.08002 * 119.96619 * 359.97438 * 8 7 6 38 38 H 1.08007 * 120.03528 * 180.27100 * 9 8 7 39 39 H 0.96996 * 120.00372 * 179.97438 * 15 14 12 40 40 H 1.07998 * 120.03008 * 180.02562 * 20 10 9 41 41 H 1.07997 * 119.96539 * 180.02562 * 21 20 10 42 42 H 1.09005 * 108.81238 * 208.87251 * 24 22 5 43 43 H 1.09000 * 108.80918 * 327.15242 * 24 22 5 44 44 H 1.09000 * 109.61829 * 296.41956 * 25 24 22 45 45 H 1.08993 * 110.02580 * 175.62374 * 25 24 22 46 46 H 1.08999 * 109.63250 * 174.27627 * 26 25 24 47 47 H 1.09007 * 109.79699 * 53.78199 * 26 25 24 48 48 H 1.09002 * 108.89526 * 298.37771 * 27 26 25 49 49 H 1.08994 * 108.89559 * 179.88638 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9069 1.0228 0.0000 4 6 2.0629 -0.7643 -1.2253 5 7 3.1727 -1.6123 -0.7355 6 6 3.3015 -2.8307 -1.5461 7 6 3.8804 -2.4794 -2.8924 8 6 3.0398 -2.1542 -3.9413 9 6 3.5675 -1.8264 -5.1748 10 6 4.9433 -1.8341 -5.3641 11 8 5.4648 -1.5177 -6.5768 12 6 6.8077 -1.4330 -6.6625 13 1 7.4205 -1.6931 -5.8120 14 6 7.4019 -1.0121 -7.8424 15 7 6.6555 -0.6948 -8.8782 16 14 9.2624 -0.8941 -7.9608 17 1 9.8677 -1.3032 -6.6679 18 1 9.7477 -1.7915 -9.0399 19 1 9.6511 0.5057 -8.2690 20 6 5.7845 -2.1666 -4.3102 21 6 5.2509 -2.4879 -3.0777 22 6 2.8374 -1.9397 0.6583 23 1 2.1294 -2.7667 0.6036 24 6 4.0088 -2.4454 1.4467 25 6 4.8219 -1.3567 2.0973 26 6 3.8800 -0.5229 2.9732 27 6 2.8864 0.1932 2.0686 28 6 2.0664 -0.7714 1.2317 29 1 1.2299 -1.1405 1.8251 30 1 -0.3634 -1.0276 0.0091 31 1 -0.3633 0.5216 0.8855 32 1 -0.3634 0.5061 -0.8944 33 1 2.4303 -0.0623 -1.9737 34 1 1.2758 -1.3868 -1.6508 35 1 3.9608 -3.5358 -1.0398 36 1 2.3192 -3.2836 -1.6799 37 1 1.9698 -2.1528 -3.7947 38 1 2.9108 -1.5683 -5.9924 39 1 7.0711 -0.3999 -9.7035 40 1 6.8548 -2.1731 -4.4543 41 1 5.9046 -2.7462 -2.2577 42 1 3.6456 -3.1184 2.2235 43 1 4.6664 -3.0036 0.7803 44 1 5.2668 -0.7237 1.3295 45 1 5.6065 -1.7947 2.7140 46 1 4.4570 0.2105 3.5364 47 1 3.3436 -1.1748 3.6629 48 1 3.4330 0.8613 1.4030 49 1 2.2118 0.7868 2.6854 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272904812.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:05 Heat of formation + Delta-G solvation = -33.466649 kcal Electronic energy + Delta-G solvation = -26595.023575 eV Core-core repulsion = 23099.797205 eV Total energy + Delta-G solvation = -3495.226370 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.48662 -40.64987 -38.46366 -36.60783 -35.12211 -34.25241 -31.86440 -31.76231 -30.60734 -29.83043 -27.83737 -26.94721 -24.95751 -23.68239 -23.51689 -22.88301 -21.85293 -21.08359 -19.83440 -19.45167 -18.83252 -17.12155 -16.50697 -16.45447 -16.31547 -15.96004 -15.62676 -15.50478 -15.28536 -15.19330 -14.95892 -14.54644 -14.33949 -14.27727 -13.87675 -13.69115 -13.57239 -13.29940 -13.19175 -12.99209 -12.88212 -12.54141 -12.41771 -12.40480 -12.24966 -12.12294 -12.08450 -11.87964 -11.58942 -11.52757 -11.26738 -11.15786 -10.88855 -10.83420 -10.77404 -9.76621 -9.20885 -8.87971 -8.47385 -6.15364 0.60830 0.69104 1.34534 1.42807 1.53003 2.17545 2.75090 3.04201 3.30707 3.52007 3.57332 3.62190 3.89075 4.01688 4.08264 4.09762 4.15858 4.20439 4.33315 4.36475 4.48859 4.51642 4.55572 4.60169 4.62601 4.69136 4.72488 4.77094 4.79347 4.85561 4.89466 4.98123 5.06181 5.08246 5.10389 5.15935 5.20513 5.24697 5.30118 5.32967 5.39431 5.43688 5.48527 5.51854 5.58711 5.63132 5.72330 5.82130 6.03247 6.16276 6.18512 6.28221 6.97602 7.78862 8.76278 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.018944 B = 0.002886 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.703767 B = 9698.305405 C =10351.715938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.097 4.097 3 H 0.073 0.927 4 C 0.044 3.956 5 N -0.522 5.522 6 C 0.111 3.889 7 C -0.148 4.148 8 C -0.059 4.059 9 C -0.204 4.204 10 C 0.114 3.886 11 O -0.234 6.234 12 C -0.413 4.413 13 H 0.100 0.900 14 C -0.023 4.023 15 N -0.922 5.922 16 Si 1.018 2.982 17 H -0.252 1.252 18 H -0.267 1.267 19 H -0.268 1.268 20 C -0.242 4.242 21 C -0.051 4.051 22 C 0.084 3.916 23 H 0.027 0.973 24 C -0.101 4.101 25 C -0.113 4.113 26 C -0.115 4.115 27 C -0.105 4.105 28 C -0.073 4.073 29 H 0.086 0.914 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.086 0.914 36 H 0.048 0.952 37 H 0.139 0.861 38 H 0.111 0.889 39 H 0.273 0.727 40 H 0.116 0.884 41 H 0.134 0.866 42 H 0.075 0.925 43 H 0.057 0.943 44 H 0.047 0.953 45 H 0.069 0.931 46 H 0.065 0.935 47 H 0.071 0.929 48 H 0.046 0.954 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.379 -1.800 25.556 27.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.116 4.116 3 H 0.092 0.908 4 C -0.083 4.083 5 N -0.246 5.246 6 C -0.017 4.017 7 C -0.149 4.149 8 C -0.077 4.077 9 C -0.223 4.223 10 C 0.064 3.936 11 O -0.140 6.140 12 C -0.489 4.489 13 H 0.118 0.882 14 C -0.221 4.221 15 N -0.560 5.560 16 Si 0.838 3.162 17 H -0.175 1.175 18 H -0.192 1.192 19 H -0.193 1.193 20 C -0.262 4.262 21 C -0.069 4.069 22 C -0.024 4.024 23 H 0.045 0.955 24 C -0.139 4.139 25 C -0.151 4.151 26 C -0.152 4.152 27 C -0.143 4.143 28 C -0.092 4.092 29 H 0.105 0.895 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.105 0.895 36 H 0.066 0.934 37 H 0.157 0.843 38 H 0.129 0.871 39 H 0.082 0.918 40 H 0.134 0.866 41 H 0.152 0.848 42 H 0.093 0.907 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.087 0.913 46 H 0.084 0.916 47 H 0.089 0.911 48 H 0.065 0.935 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.990 -1.446 25.111 26.711 hybrid contribution 0.141 -0.206 -1.035 1.065 sum -8.849 -1.652 24.076 25.704 Atomic orbital electron populations 1.21837 0.93432 1.02006 1.02355 1.22220 0.96485 0.99358 0.93503 0.90821 1.22899 0.91806 0.96254 0.97380 1.63941 1.42613 1.16319 1.01746 1.20954 0.99521 0.91354 0.89829 1.19529 0.92919 1.06933 0.95530 1.20803 0.99702 0.96414 0.90775 1.20405 0.91621 1.10835 0.99463 1.19902 0.93980 0.93898 0.85814 1.83936 1.24309 1.78823 1.26974 1.21853 0.79119 1.46854 1.01051 0.88245 1.26584 1.06172 0.95525 0.93772 1.70186 1.38181 1.44033 1.03599 0.84535 0.73569 0.78679 0.79446 1.17531 1.19217 1.19303 1.21233 0.99874 1.10466 0.94598 1.20852 0.95172 0.95922 0.94976 1.20920 0.96037 0.96823 0.88583 0.95469 1.20410 0.96257 0.98413 0.98816 1.21076 0.97822 0.97572 0.98624 1.21435 0.97133 0.99217 0.97444 1.21176 0.97814 0.97500 0.97780 1.21150 0.97756 0.94528 0.95738 0.89532 0.92531 0.91284 0.92640 0.92605 0.93423 0.89530 0.93365 0.84322 0.87070 0.91845 0.86585 0.84846 0.90663 0.92446 0.93414 0.91275 0.91626 0.91071 0.93510 0.91180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 8.82 71.98 0.64 -1.34 16 2 C -0.10 -1.74 3.20 -9.83 -0.03 -1.77 16 3 H 0.07 1.43 7.29 -2.39 -0.02 1.41 16 4 C 0.04 1.02 5.28 86.40 0.46 1.48 16 5 N -0.52 -12.38 5.07 -879.29 -4.46 -16.84 16 6 C 0.11 2.72 4.70 85.56 0.40 3.12 16 7 C -0.15 -4.80 5.16 -19.83 -0.10 -4.90 16 8 C -0.06 -2.03 9.07 22.25 0.20 -1.83 16 9 C -0.20 -8.98 9.99 22.39 0.22 -8.75 16 10 C 0.11 5.88 6.65 22.58 0.15 6.03 16 11 O -0.23 -14.45 9.76 -22.70 -0.22 -14.67 16 12 C -0.41 -24.65 9.49 67.92 0.64 -24.00 16 13 H 0.10 5.50 5.20 -2.91 -0.02 5.48 16 14 C -0.02 -1.35 5.49 84.83 0.47 -0.89 16 15 N -0.92 -57.55 13.67 21.61 0.30 -57.26 16 16 Si 1.02 43.76 29.55 68.60 2.03 45.79 16 17 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 18 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 19 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 20 C -0.24 -10.99 9.17 22.39 0.21 -10.79 16 21 C -0.05 -1.84 9.69 22.25 0.22 -1.63 16 22 C 0.08 1.57 2.11 43.36 0.09 1.66 16 23 H 0.03 0.49 7.69 -2.39 -0.02 0.48 16 24 C -0.10 -1.71 5.31 28.87 0.15 -1.56 16 25 C -0.11 -1.90 5.98 29.93 0.18 -1.72 16 26 C -0.11 -1.59 5.93 30.45 0.18 -1.41 16 27 C -0.11 -1.61 5.09 29.94 0.15 -1.46 16 28 C -0.07 -1.17 2.85 -11.11 -0.03 -1.20 16 29 H 0.09 1.17 7.68 -2.39 -0.02 1.15 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.80 8.14 -2.38 -0.02 0.79 16 32 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.05 1.03 7.15 -2.39 -0.02 1.02 16 35 H 0.09 1.94 6.79 -2.39 -0.02 1.92 16 36 H 0.05 1.08 7.68 -2.39 -0.02 1.06 16 37 H 0.14 3.88 7.98 -2.91 -0.02 3.86 16 38 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 39 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 40 H 0.12 5.38 5.64 -2.91 -0.02 5.36 16 41 H 0.13 4.09 8.06 -2.91 -0.02 4.07 16 42 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 43 H 0.06 1.08 6.81 -2.39 -0.02 1.07 16 44 H 0.05 1.02 8.13 -2.39 -0.02 1.00 16 45 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.07 0.83 8.13 -2.38 -0.02 0.81 16 48 H 0.05 0.89 7.50 -2.39 -0.02 0.87 16 49 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -69.91 376.62 2.75 -67.16 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: 0.91 Total: 26.78 kcal Atomic # 6 Polarization: -55.15 SS G_CDS: 4.19 Total: -50.95 kcal Atomic # 7 Polarization: -69.93 SS G_CDS: -4.16 Total: -74.10 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -0.22 Total: -14.67 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -69.91 2.75 -67.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272904812.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.690 kcal (2) G-P(sol) polarization free energy of solvation -69.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds