Wall clock time and date at job start Tue Mar 31 2020 10:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 110.57820 * 2 1 4 4 C 1.54991 * 110.52906 * 237.27392 * 2 1 3 5 5 N 1.49095 * 106.83779 * 243.77202 * 4 2 1 6 6 C 1.46899 * 110.99923 * 145.35237 * 5 4 2 7 7 C 1.50706 * 109.46983 * 54.51310 * 6 5 4 8 8 C 1.38303 * 119.93034 * 90.00068 * 7 6 5 9 9 C 1.38099 * 120.06408 * 179.97438 * 8 7 6 10 10 C 1.38882 * 119.93445 * 359.97438 * 9 8 7 11 11 O 1.35754 * 120.06635 * 179.97438 * 10 9 8 12 12 C 1.34829 * 117.00355 * 354.46667 * 11 10 9 13 13 H 1.07998 * 119.99409 * 5.05373 * 12 11 10 14 14 C 1.38651 * 120.00088 * 185.05761 * 12 11 10 15 15 N 1.31562 * 119.99726 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00090 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47067 * 59.99946 * 16 14 12 18 18 H 1.48501 * 109.47257 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47187 * 299.99789 * 16 14 12 20 20 C 1.38874 * 119.85939 * 0.27819 * 10 9 8 21 21 C 1.38104 * 119.93052 * 359.46389 * 20 10 9 22 22 C 1.46652 * 104.27910 * 25.76378 * 5 4 2 23 23 H 1.09000 * 109.89543 * 73.93515 * 22 5 4 24 24 C 1.51604 * 116.84681 * 199.98621 * 22 5 4 25 25 C 1.53759 * 107.30399 * 178.54560 * 24 22 5 26 26 C 1.52571 * 111.44218 * 302.41881 * 25 24 22 27 27 C 1.53733 * 111.47949 * 54.74444 * 26 25 24 28 28 C 1.51768 * 107.26429 * 302.22948 * 27 26 25 29 29 H 1.08996 * 110.29215 * 304.46602 * 28 27 26 30 30 H 1.08996 * 109.47436 * 297.26692 * 1 2 3 31 31 H 1.08994 * 109.47472 * 57.27264 * 1 2 3 32 32 H 1.09004 * 109.47107 * 177.26899 * 1 2 3 33 33 H 1.08996 * 109.98790 * 124.42910 * 4 2 1 34 34 H 1.09003 * 109.98775 * 3.11512 * 4 2 1 35 35 H 1.08999 * 109.47612 * 294.51386 * 6 5 4 36 36 H 1.09000 * 109.47408 * 174.50834 * 6 5 4 37 37 H 1.07996 * 119.96532 * 0.02562 * 8 7 6 38 38 H 1.08007 * 120.03128 * 179.97438 * 9 8 7 39 39 H 0.97003 * 119.99701 * 179.97438 * 15 14 12 40 40 H 1.08004 * 120.03515 * 179.72706 * 20 10 9 41 41 H 1.08002 * 119.95922 * 180.27996 * 21 20 10 42 42 H 1.09000 * 109.89131 * 297.99422 * 24 22 5 43 43 H 1.08993 * 109.89141 * 59.02147 * 24 22 5 44 44 H 1.08996 * 109.08297 * 62.92525 * 25 24 22 45 45 H 1.08997 * 109.08355 * 181.91458 * 25 24 22 46 46 H 1.09005 * 109.07174 * 175.25903 * 26 25 24 47 47 H 1.08997 * 109.07954 * 294.22382 * 26 25 24 48 48 H 1.08998 * 109.89297 * 61.66413 * 27 26 25 49 49 H 1.08995 * 109.89982 * 182.70912 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9131 1.0205 0.0000 4 6 2.0735 -0.7847 -1.2211 5 7 2.8156 -1.9607 -0.6832 6 6 2.6660 -3.1259 -1.5652 7 6 3.0844 -2.7538 -2.9644 8 6 4.4006 -2.9154 -3.3571 9 6 4.7869 -2.5758 -4.6387 10 6 3.8520 -2.0720 -5.5337 11 8 4.2289 -1.7368 -6.7941 12 6 5.5449 -1.8084 -7.0790 13 1 6.2355 -2.1988 -6.3462 14 6 6.0113 -1.3807 -8.3127 15 7 5.1699 -0.9055 -9.2054 16 14 7.8343 -1.4804 -8.7076 17 1 8.2820 -2.8940 -8.6252 18 1 8.0724 -0.9656 -10.0800 19 1 8.5978 -0.6617 -7.7319 20 6 2.5323 -1.9059 -5.1347 21 6 2.1511 -2.2524 -3.8533 22 6 2.2005 -2.2092 0.6247 23 1 1.2162 -2.6584 0.4923 24 6 3.0083 -3.0211 1.6180 25 6 2.1817 -3.1156 2.9110 26 6 1.8442 -1.7325 3.4597 27 6 1.1405 -0.8645 2.4039 28 6 2.0665 -0.7744 1.2049 29 1 3.0420 -0.3944 1.5083 30 1 -0.3634 0.4708 0.9134 31 1 -0.3634 0.5556 -0.8645 32 1 -0.3633 -1.0265 -0.0490 33 1 2.7465 -0.1528 -1.8005 34 1 1.2463 -1.1204 -1.8465 35 1 1.6242 -3.4462 -1.5706 36 1 3.2944 -3.9393 -1.2024 37 1 5.1268 -3.3084 -2.6610 38 1 5.8150 -2.7019 -4.9447 39 1 5.4963 -0.6059 -10.0683 40 1 1.8039 -1.5102 -5.8270 41 1 1.1239 -2.1277 -3.5439 42 1 3.1900 -4.0195 1.2202 43 1 3.9572 -2.5238 1.8188 44 1 1.2560 -3.6524 2.7037 45 1 2.7518 -3.6664 3.6591 46 1 1.1899 -1.8423 4.3245 47 1 2.7646 -1.2386 3.7712 48 1 0.1983 -1.3277 2.1110 49 1 0.9548 0.1313 2.8063 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272904816.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:08 Heat of formation + Delta-G solvation = -31.825681 kcal Electronic energy + Delta-G solvation = -26559.113954 eV Core-core repulsion = 23063.958742 eV Total energy + Delta-G solvation = -3495.155212 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.56186 -40.67112 -38.54278 -36.60698 -34.91138 -34.23682 -31.88358 -31.74881 -30.16827 -29.45745 -27.96359 -27.14113 -25.04106 -23.85793 -23.38553 -22.32831 -21.83328 -21.04077 -19.95873 -19.85431 -18.80500 -16.78971 -16.54623 -16.46626 -16.27314 -16.16980 -15.53343 -15.45923 -15.30997 -15.17477 -14.83271 -14.72867 -14.45592 -14.34157 -13.84991 -13.56491 -13.51684 -13.43974 -13.23166 -12.97753 -12.79445 -12.55572 -12.37861 -12.30832 -12.18666 -12.10276 -12.05950 -11.88015 -11.67174 -11.51602 -11.21682 -11.17792 -11.16090 -10.79396 -10.63717 -9.78111 -9.33715 -8.89198 -8.47672 -6.15881 0.58543 0.66671 1.34230 1.44963 1.50536 2.17496 2.74926 3.03429 3.24021 3.50386 3.56014 3.69502 3.90700 4.01624 4.05197 4.05929 4.17677 4.22279 4.32283 4.38845 4.40225 4.47381 4.55580 4.58118 4.62657 4.66064 4.67041 4.75012 4.79461 4.83666 4.88281 4.99933 5.04234 5.07092 5.14575 5.17160 5.21110 5.22923 5.28189 5.29784 5.33435 5.37351 5.46905 5.51477 5.53864 5.62597 5.70680 5.79621 6.01497 6.02894 6.17670 6.27626 6.96961 7.77597 8.75396 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.025501 B = 0.002648 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.717639 B =10570.589264 C =10976.147966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.097 4.097 3 H 0.075 0.925 4 C 0.042 3.958 5 N -0.513 5.513 6 C 0.108 3.892 7 C -0.156 4.156 8 C -0.051 4.051 9 C -0.243 4.243 10 C 0.115 3.885 11 O -0.232 6.232 12 C -0.414 4.414 13 H 0.100 0.900 14 C -0.023 4.023 15 N -0.921 5.921 16 Si 1.018 2.982 17 H -0.257 1.257 18 H -0.271 1.271 19 H -0.258 1.258 20 C -0.203 4.203 21 C -0.058 4.058 22 C 0.063 3.937 23 H 0.047 0.953 24 C -0.102 4.102 25 C -0.112 4.112 26 C -0.118 4.118 27 C -0.103 4.103 28 C -0.081 4.081 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.046 0.954 36 H 0.086 0.914 37 H 0.135 0.865 38 H 0.118 0.882 39 H 0.273 0.727 40 H 0.112 0.888 41 H 0.139 0.861 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.058 0.942 48 H 0.068 0.932 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.927 -2.389 26.311 27.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.116 4.116 3 H 0.093 0.907 4 C -0.086 4.086 5 N -0.237 5.237 6 C -0.019 4.019 7 C -0.157 4.157 8 C -0.069 4.069 9 C -0.262 4.262 10 C 0.065 3.935 11 O -0.139 6.139 12 C -0.490 4.490 13 H 0.118 0.882 14 C -0.220 4.220 15 N -0.559 5.559 16 Si 0.837 3.163 17 H -0.181 1.181 18 H -0.195 1.195 19 H -0.182 1.182 20 C -0.222 4.222 21 C -0.077 4.077 22 C -0.045 4.045 23 H 0.065 0.935 24 C -0.140 4.140 25 C -0.151 4.151 26 C -0.155 4.155 27 C -0.141 4.141 28 C -0.100 4.100 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.105 0.895 37 H 0.153 0.847 38 H 0.135 0.865 39 H 0.082 0.918 40 H 0.130 0.870 41 H 0.157 0.843 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.090 0.910 46 H 0.091 0.909 47 H 0.077 0.923 48 H 0.087 0.913 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.491 -2.158 25.953 27.099 hybrid contribution 0.088 -0.051 -1.215 1.219 sum -7.402 -2.208 24.738 25.916 Atomic orbital electron populations 1.21822 0.93608 1.01690 1.02384 1.21804 0.96623 0.99170 0.94013 0.90682 1.23297 0.96136 0.92409 0.96753 1.64804 1.52048 1.04298 1.02509 1.20967 0.99591 0.93148 0.88228 1.19559 0.93450 1.06444 0.96205 1.20876 0.96023 0.96294 0.93736 1.21245 0.99923 1.09206 0.95804 1.19906 0.94746 0.93703 0.85138 1.83938 1.27491 1.77456 1.24991 1.21774 0.81065 1.44222 1.01986 0.88241 1.26586 1.05720 0.95377 0.94308 1.70181 1.37411 1.41286 1.07043 0.84661 0.73788 0.79709 0.78147 1.18113 1.19513 1.18245 1.20399 0.93484 1.09997 0.98365 1.20826 0.99469 0.96213 0.91152 1.22442 0.96069 0.96937 0.89091 0.93522 1.21315 0.98646 0.99402 0.94608 1.21501 0.99861 0.97477 0.96217 1.21554 1.00640 0.95234 0.98122 1.21444 0.98023 1.00369 0.94283 1.21789 0.99649 0.94110 0.94413 0.91147 0.90872 0.92876 0.92911 0.93007 0.93153 0.93541 0.89538 0.84746 0.86465 0.91821 0.86976 0.84300 0.92116 0.91967 0.91986 0.91041 0.90883 0.92295 0.91285 0.90955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 7.88 71.98 0.57 -1.56 16 2 C -0.10 -1.85 3.53 -10.13 -0.04 -1.88 16 3 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 4 C 0.04 1.03 5.08 86.56 0.44 1.47 16 5 N -0.51 -12.45 5.31 -864.00 -4.59 -17.04 16 6 C 0.11 2.70 5.12 85.56 0.44 3.14 16 7 C -0.16 -5.05 4.78 -19.83 -0.09 -5.15 16 8 C -0.05 -1.85 9.69 22.25 0.22 -1.63 16 9 C -0.24 -10.94 9.17 22.39 0.21 -10.74 16 10 C 0.12 5.90 6.65 22.58 0.15 6.05 16 11 O -0.23 -14.28 9.76 -22.78 -0.22 -14.50 16 12 C -0.41 -24.64 9.49 67.92 0.64 -24.00 16 13 H 0.10 5.45 5.20 -2.91 -0.02 5.43 16 14 C -0.02 -1.30 5.49 84.83 0.47 -0.83 16 15 N -0.92 -57.34 13.67 21.61 0.30 -57.05 16 16 Si 1.02 43.56 29.55 68.60 2.03 45.59 16 17 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 18 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 19 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 20 C -0.20 -8.87 9.99 22.39 0.22 -8.65 16 21 C -0.06 -2.01 8.36 22.25 0.19 -1.82 16 22 C 0.06 1.19 1.60 45.31 0.07 1.26 16 23 H 0.05 0.88 7.49 -2.39 -0.02 0.87 16 24 C -0.10 -1.67 5.90 30.39 0.18 -1.50 16 25 C -0.11 -1.38 5.85 30.71 0.18 -1.20 16 26 C -0.12 -1.34 5.84 30.70 0.18 -1.16 16 27 C -0.10 -1.30 4.34 30.44 0.13 -1.17 16 28 C -0.08 -1.38 2.42 -10.41 -0.03 -1.41 16 29 H 0.07 1.38 8.04 -2.39 -0.02 1.36 16 30 H 0.07 0.91 7.25 -2.39 -0.02 0.89 16 31 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.05 0.82 7.72 -2.38 -0.02 0.80 16 33 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.05 1.23 5.52 -2.39 -0.01 1.22 16 35 H 0.05 1.06 7.83 -2.39 -0.02 1.04 16 36 H 0.09 2.01 8.08 -2.39 -0.02 1.99 16 37 H 0.13 4.15 8.06 -2.91 -0.02 4.12 16 38 H 0.12 5.39 5.64 -2.91 -0.02 5.37 16 39 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 40 H 0.11 4.85 8.06 -2.91 -0.02 4.82 16 41 H 0.14 3.88 7.05 -2.91 -0.02 3.86 16 42 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.06 1.14 8.06 -2.39 -0.02 1.12 16 44 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 46 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 47 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.07 0.84 7.04 -2.39 -0.02 0.82 16 49 H 0.07 0.81 8.12 -2.39 -0.02 0.79 16 Total: -1.00 -69.15 373.41 2.55 -66.59 By element: Atomic # 1 Polarization: 26.25 SS G_CDS: 0.92 Total: 27.17 kcal Atomic # 6 Polarization: -54.88 SS G_CDS: 4.12 Total: -50.75 kcal Atomic # 7 Polarization: -69.80 SS G_CDS: -4.29 Total: -74.09 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.22 Total: -14.50 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -69.15 2.55 -66.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272904816.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.768 kcal (2) G-P(sol) polarization free energy of solvation -69.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds