Wall clock time and date at job start Tue Mar 31 2020 10:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 110.67676 * 2 1 4 4 C 1.54482 * 110.75920 * 236.55757 * 2 1 3 5 5 N 1.47071 * 107.00448 * 219.37151 * 4 2 1 6 6 C 1.46902 * 110.40943 * 236.02694 * 5 4 2 7 7 C 1.50701 * 109.46598 * 290.01880 * 6 5 4 8 8 C 1.38305 * 119.93036 * 269.71887 * 7 6 5 9 9 C 1.38104 * 120.06696 * 179.73175 * 8 7 6 10 10 C 1.38879 * 119.93041 * 0.54471 * 9 8 7 11 11 O 1.35746 * 120.06632 * 179.74677 * 10 9 8 12 12 C 1.34828 * 116.99883 * 174.44771 * 11 10 9 13 13 H 1.08004 * 120.00177 * 5.05451 * 12 11 10 14 14 C 1.38657 * 120.00328 * 185.05969 * 12 11 10 15 15 N 1.31562 * 119.99510 * 359.97438 * 14 12 11 16 16 Si 1.86791 * 120.00320 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47161 * 359.97438 * 16 14 12 18 18 H 1.48491 * 109.47396 * 120.00007 * 16 14 12 19 19 H 1.48507 * 109.47240 * 239.99735 * 16 14 12 20 20 C 1.38879 * 119.86059 * 359.73261 * 10 9 8 21 21 C 1.38094 * 119.93535 * 359.97438 * 20 10 9 22 22 C 1.46950 * 108.22629 * 357.69920 * 5 4 2 23 23 H 1.08993 * 108.50271 * 270.71184 * 22 5 4 24 24 C 1.51184 * 112.98268 * 150.22458 * 22 5 4 25 25 C 1.52874 * 111.24181 * 294.35230 * 24 22 5 26 26 C 1.53246 * 108.41361 * 300.78505 * 25 24 22 27 27 C 1.52680 * 108.67796 * 63.19811 * 26 25 24 28 28 C 1.53017 * 110.69473 * 298.03715 * 27 26 25 29 29 H 1.08998 * 112.41393 * 288.00280 * 28 27 26 30 30 H 1.09006 * 109.46889 * 296.75478 * 1 2 3 31 31 H 1.08997 * 109.47399 * 56.75416 * 1 2 3 32 32 H 1.09002 * 109.47164 * 176.75908 * 1 2 3 33 33 H 1.09006 * 109.90466 * 338.18486 * 4 2 1 34 34 H 1.08998 * 109.90907 * 99.26078 * 4 2 1 35 35 H 1.09000 * 109.47132 * 50.01405 * 6 5 4 36 36 H 1.08994 * 109.47589 * 170.01925 * 6 5 4 37 37 H 1.07998 * 119.96366 * 0.02562 * 8 7 6 38 38 H 1.08001 * 120.03293 * 180.27861 * 9 8 7 39 39 H 0.96995 * 119.99709 * 180.02562 * 15 14 12 40 40 H 1.08007 * 120.03178 * 179.97438 * 20 10 9 41 41 H 1.07993 * 119.97023 * 180.02562 * 21 20 10 42 42 H 1.09001 * 109.12543 * 173.89997 * 24 22 5 43 43 H 1.09000 * 109.07699 * 54.77091 * 24 22 5 44 44 H 1.08994 * 109.67666 * 60.51868 * 25 24 22 45 45 H 1.09002 * 109.67438 * 181.05344 * 25 24 22 46 46 H 1.08997 * 109.60083 * 182.95344 * 26 25 24 47 47 H 1.09001 * 109.60544 * 303.43756 * 26 25 24 48 48 H 1.08997 * 109.22957 * 177.72545 * 27 26 25 49 49 H 1.09001 * 109.19639 * 58.33092 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0775 -0.7961 -1.2054 5 7 3.2466 -1.5498 -0.7277 6 6 4.4292 -1.2284 -1.5377 7 6 4.2653 -1.8096 -2.9184 8 6 4.7208 -3.0875 -3.1877 9 6 4.5671 -3.6250 -4.4505 10 6 3.9647 -2.8768 -5.4535 11 8 3.8169 -3.4006 -6.6971 12 6 3.1226 -2.6682 -7.5912 13 1 2.7836 -1.6765 -7.3300 14 6 2.8436 -3.1880 -8.8460 15 7 3.2569 -4.3958 -9.1643 16 14 1.8811 -2.1736 -10.0844 17 1 1.5342 -0.8598 -9.4853 18 1 2.7078 -1.9612 -11.2995 19 1 0.6356 -2.8935 -10.4527 20 6 3.5136 -1.5918 -5.1814 21 6 3.6647 -1.0621 -3.9151 22 6 3.4673 -1.2093 0.6846 23 1 4.1270 -0.3430 0.7326 24 6 4.0940 -2.3370 1.4727 25 6 3.1499 -3.5353 1.5714 26 6 1.8582 -3.0786 2.2580 27 6 1.1836 -2.0269 1.3805 28 6 2.0828 -0.7994 1.2195 29 1 2.1452 -0.2073 2.1326 30 1 -0.3633 0.4627 0.9177 31 1 -0.3634 0.5634 -0.8594 32 1 -0.3633 -1.0260 -0.0581 33 1 1.3193 -1.4910 -1.5665 34 1 2.3633 -0.1111 -2.0036 35 1 4.5371 -0.1461 -1.6097 36 1 5.3171 -1.6516 -1.0684 37 1 5.1928 -3.6673 -2.4083 38 1 4.9189 -4.6246 -4.6590 39 1 3.0621 -4.7593 -10.0422 40 1 3.0451 -1.0074 -5.9595 41 1 3.3138 -0.0631 -3.7028 42 1 4.3287 -1.9836 2.4768 43 1 5.0150 -2.6476 0.9793 44 1 2.9229 -3.9069 0.5722 45 1 3.6188 -4.3245 2.1592 46 1 1.1910 -3.9310 2.3857 47 1 2.0940 -2.6468 3.2306 48 1 0.2429 -1.7251 1.8409 49 1 0.9816 -2.4553 0.3988 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272904819.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:12 Heat of formation + Delta-G solvation = -14.416597 kcal Electronic energy + Delta-G solvation = -26839.595956 eV Core-core repulsion = 23345.195659 eV Total energy + Delta-G solvation = -3494.400298 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.66716 -38.93426 -36.80747 -35.29092 -34.08680 -32.27422 -30.62757 -30.11123 -29.21175 -28.68546 -26.39602 -25.36213 -23.74426 -23.08015 -21.96714 -21.78467 -20.48506 -19.46628 -18.93152 -17.93435 -16.87166 -16.17622 -15.57343 -15.10725 -14.90543 -14.53709 -14.42186 -14.23980 -14.03956 -13.58684 -13.47759 -13.28770 -13.00417 -12.79136 -12.60441 -12.54475 -12.46155 -12.17725 -11.97581 -11.81200 -11.59972 -11.55474 -11.25645 -11.16645 -10.89044 -10.75895 -10.70463 -10.54642 -10.46111 -10.40757 -10.38219 -10.01559 -9.92679 -9.28860 -8.81087 -8.13969 -8.11503 -7.12832 -6.42777 -4.01434 2.27326 2.33889 3.12987 3.14674 3.20124 3.98178 4.04964 4.37230 4.45483 4.62894 4.79016 4.93323 5.00273 5.10724 5.12827 5.20206 5.30414 5.31370 5.34392 5.37201 5.41716 5.47900 5.51299 5.54140 5.60065 5.66816 5.75509 5.79796 5.80952 5.86731 5.90782 5.93742 5.98282 6.05266 6.17085 6.21665 6.23141 6.25715 6.29581 6.33965 6.46329 6.50905 6.75536 6.95098 7.05276 7.19110 7.23967 7.34173 7.45447 7.48746 7.87943 8.02673 9.03176 9.74468 10.75540 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.019533 B = 0.003001 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.116511 B = 9328.527369 C = 9935.402697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 H 0.069 0.931 4 C 0.049 3.951 5 N -0.509 5.509 6 C 0.108 3.892 7 C -0.174 4.174 8 C -0.053 4.053 9 C -0.194 4.194 10 C 0.155 3.845 11 O -0.180 6.180 12 C -0.390 4.390 13 H 0.092 0.908 14 C 0.038 3.962 15 N -0.863 5.863 16 Si 0.940 3.060 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.276 1.276 20 C -0.234 4.234 21 C -0.065 4.065 22 C 0.079 3.921 23 H 0.037 0.963 24 C -0.099 4.099 25 C -0.112 4.112 26 C -0.118 4.118 27 C -0.107 4.107 28 C -0.086 4.086 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.031 0.969 36 H 0.070 0.930 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.269 0.731 40 H 0.125 0.875 41 H 0.101 0.899 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.076 0.924 45 H 0.053 0.947 46 H 0.057 0.943 47 H 0.054 0.946 48 H 0.055 0.945 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.363 7.463 21.432 22.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.134 4.134 3 H 0.087 0.913 4 C -0.078 4.078 5 N -0.233 5.233 6 C -0.019 4.019 7 C -0.175 4.175 8 C -0.072 4.072 9 C -0.213 4.213 10 C 0.102 3.898 11 O -0.083 6.083 12 C -0.467 4.467 13 H 0.109 0.891 14 C -0.166 4.166 15 N -0.499 5.499 16 Si 0.765 3.235 17 H -0.191 1.191 18 H -0.202 1.202 19 H -0.201 1.201 20 C -0.253 4.253 21 C -0.084 4.084 22 C -0.029 4.029 23 H 0.055 0.945 24 C -0.137 4.137 25 C -0.150 4.150 26 C -0.155 4.155 27 C -0.144 4.144 28 C -0.104 4.104 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.049 0.951 36 H 0.089 0.911 37 H 0.128 0.872 38 H 0.133 0.867 39 H 0.079 0.921 40 H 0.142 0.858 41 H 0.119 0.881 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.095 0.905 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.073 0.927 48 H 0.073 0.927 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.373 6.561 21.058 22.183 hybrid contribution -0.313 1.515 -0.673 1.687 sum -2.686 8.076 20.385 22.090 Atomic orbital electron populations 1.21805 0.94486 1.02386 1.01296 1.22659 0.96387 0.98814 0.95565 0.91297 1.22866 0.93531 0.95583 0.95857 1.63318 1.03933 1.55293 1.00764 1.20970 0.92562 0.96868 0.91515 1.19052 1.08184 0.96261 0.94014 1.20430 0.97753 0.94062 0.94932 1.20213 1.08261 1.00548 0.92302 1.19383 0.92734 0.91519 0.86191 1.83978 1.64126 1.44570 1.15652 1.21360 1.33111 0.99214 0.92998 0.89107 1.25280 0.97553 0.96414 0.97313 1.70051 1.43322 1.15014 1.21468 0.85660 0.78945 0.79135 0.79758 1.19147 1.20178 1.20149 1.21105 1.09430 0.97050 0.97739 1.20582 0.97234 0.97950 0.92653 1.21719 0.95800 0.96170 0.89239 0.94517 1.20995 0.98625 0.95479 0.98619 1.21454 0.95201 0.96780 1.01563 1.21514 0.97284 0.98380 0.98360 1.21521 0.97264 0.94784 1.00828 1.22288 0.94512 0.96558 0.97084 0.89999 0.92882 0.92772 0.91764 0.90585 0.92352 0.95069 0.91142 0.87212 0.86669 0.92122 0.85767 0.88090 0.92339 0.92038 0.90500 0.92825 0.92394 0.92718 0.92654 0.90727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.27 37.15 0.31 -0.97 16 2 C -0.11 -1.15 3.36 -88.27 -0.30 -1.44 16 3 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 4 C 0.05 0.62 4.99 -2.95 -0.01 0.60 16 5 N -0.51 -6.48 4.57 -227.42 -1.04 -7.52 16 6 C 0.11 1.48 4.70 -4.97 -0.02 1.46 16 7 C -0.17 -2.97 5.11 -104.57 -0.53 -3.50 16 8 C -0.05 -0.96 9.69 -39.61 -0.38 -1.35 16 9 C -0.19 -4.17 9.99 -39.39 -0.39 -4.56 16 10 C 0.16 3.80 6.65 -39.11 -0.26 3.54 16 11 O -0.18 -5.20 9.76 0.07 0.00 -5.20 16 12 C -0.39 -11.02 9.49 30.89 0.29 -10.73 16 13 H 0.09 2.38 5.20 -52.48 -0.27 2.11 16 14 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 15 N -0.86 -25.54 13.67 55.48 0.76 -24.78 16 16 Si 0.94 20.69 29.55 -169.99 -5.02 15.67 16 17 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 18 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 19 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 20 C -0.23 -5.13 9.17 -39.40 -0.36 -5.49 16 21 C -0.07 -1.20 8.72 -39.61 -0.35 -1.55 16 22 C 0.08 0.84 2.10 -68.09 -0.14 0.70 16 23 H 0.04 0.40 7.77 -51.93 -0.40 -0.01 16 24 C -0.10 -0.98 5.60 -27.71 -0.16 -1.13 16 25 C -0.11 -1.12 5.91 -26.67 -0.16 -1.28 16 26 C -0.12 -1.06 5.92 -26.77 -0.16 -1.22 16 27 C -0.11 -1.01 3.66 -26.89 -0.10 -1.11 16 28 C -0.09 -0.81 3.49 -88.53 -0.31 -1.12 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.60 6.21 -51.93 -0.32 0.27 16 33 H 0.08 1.06 7.44 -51.93 -0.39 0.67 16 34 H 0.06 0.77 5.48 -51.93 -0.28 0.49 16 35 H 0.03 0.42 7.88 -51.93 -0.41 0.01 16 36 H 0.07 0.91 7.63 -51.93 -0.40 0.52 16 37 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 38 H 0.12 2.41 8.06 -52.49 -0.42 1.98 16 39 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.12 2.75 5.64 -52.48 -0.30 2.45 16 41 H 0.10 1.62 6.88 -52.49 -0.36 1.25 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.64 7.75 -51.93 -0.40 0.23 16 44 H 0.08 0.93 8.05 -51.93 -0.42 0.52 16 45 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.05 0.48 7.42 -51.93 -0.39 0.09 16 49 H 0.07 0.85 6.24 -51.93 -0.32 0.52 16 LS Contribution 370.33 15.07 5.58 5.58 Total: -1.00 -29.68 370.33 -10.88 -40.56 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -8.02 Total: 3.87 kcal Atomic # 6 Polarization: -25.06 SS G_CDS: -3.13 Total: -28.19 kcal Atomic # 7 Polarization: -32.02 SS G_CDS: -0.28 Total: -32.30 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: 0.00 Total: -5.20 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.68 -10.88 -40.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272904819.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.143 kcal (2) G-P(sol) polarization free energy of solvation -29.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds