Wall clock time and date at job start Tue Mar 31 2020 10:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 110.67676 * 2 1 4 4 C 1.54482 * 110.75920 * 236.55757 * 2 1 3 5 5 N 1.47071 * 107.00448 * 219.37151 * 4 2 1 6 6 C 1.46902 * 110.40943 * 236.02694 * 5 4 2 7 7 C 1.50701 * 109.46598 * 290.01880 * 6 5 4 8 8 C 1.38305 * 119.93036 * 269.71887 * 7 6 5 9 9 C 1.38104 * 120.06696 * 179.73175 * 8 7 6 10 10 C 1.38879 * 119.93041 * 0.54471 * 9 8 7 11 11 O 1.35746 * 120.06632 * 179.74677 * 10 9 8 12 12 C 1.34828 * 116.99883 * 174.44771 * 11 10 9 13 13 H 1.08004 * 120.00177 * 5.05451 * 12 11 10 14 14 C 1.38657 * 120.00328 * 185.05969 * 12 11 10 15 15 N 1.31562 * 119.99510 * 359.97438 * 14 12 11 16 16 Si 1.86791 * 120.00320 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47161 * 359.97438 * 16 14 12 18 18 H 1.48491 * 109.47396 * 120.00007 * 16 14 12 19 19 H 1.48507 * 109.47240 * 239.99735 * 16 14 12 20 20 C 1.38879 * 119.86059 * 359.73261 * 10 9 8 21 21 C 1.38094 * 119.93535 * 359.97438 * 20 10 9 22 22 C 1.46950 * 108.22629 * 357.69920 * 5 4 2 23 23 H 1.08993 * 108.50271 * 270.71184 * 22 5 4 24 24 C 1.51184 * 112.98268 * 150.22458 * 22 5 4 25 25 C 1.52874 * 111.24181 * 294.35230 * 24 22 5 26 26 C 1.53246 * 108.41361 * 300.78505 * 25 24 22 27 27 C 1.52680 * 108.67796 * 63.19811 * 26 25 24 28 28 C 1.53017 * 110.69473 * 298.03715 * 27 26 25 29 29 H 1.08998 * 112.41393 * 288.00280 * 28 27 26 30 30 H 1.09006 * 109.46889 * 296.75478 * 1 2 3 31 31 H 1.08997 * 109.47399 * 56.75416 * 1 2 3 32 32 H 1.09002 * 109.47164 * 176.75908 * 1 2 3 33 33 H 1.09006 * 109.90466 * 338.18486 * 4 2 1 34 34 H 1.08998 * 109.90907 * 99.26078 * 4 2 1 35 35 H 1.09000 * 109.47132 * 50.01405 * 6 5 4 36 36 H 1.08994 * 109.47589 * 170.01925 * 6 5 4 37 37 H 1.07998 * 119.96366 * 0.02562 * 8 7 6 38 38 H 1.08001 * 120.03293 * 180.27861 * 9 8 7 39 39 H 0.96995 * 119.99709 * 180.02562 * 15 14 12 40 40 H 1.08007 * 120.03178 * 179.97438 * 20 10 9 41 41 H 1.07993 * 119.97023 * 180.02562 * 21 20 10 42 42 H 1.09001 * 109.12543 * 173.89997 * 24 22 5 43 43 H 1.09000 * 109.07699 * 54.77091 * 24 22 5 44 44 H 1.08994 * 109.67666 * 60.51868 * 25 24 22 45 45 H 1.09002 * 109.67438 * 181.05344 * 25 24 22 46 46 H 1.08997 * 109.60083 * 182.95344 * 26 25 24 47 47 H 1.09001 * 109.60544 * 303.43756 * 26 25 24 48 48 H 1.08997 * 109.22957 * 177.72545 * 27 26 25 49 49 H 1.09001 * 109.19639 * 58.33092 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0775 -0.7961 -1.2054 5 7 3.2466 -1.5498 -0.7277 6 6 4.4292 -1.2284 -1.5377 7 6 4.2653 -1.8096 -2.9184 8 6 4.7208 -3.0875 -3.1877 9 6 4.5671 -3.6250 -4.4505 10 6 3.9647 -2.8768 -5.4535 11 8 3.8169 -3.4006 -6.6971 12 6 3.1226 -2.6682 -7.5912 13 1 2.7836 -1.6765 -7.3300 14 6 2.8436 -3.1880 -8.8460 15 7 3.2569 -4.3958 -9.1643 16 14 1.8811 -2.1736 -10.0844 17 1 1.5342 -0.8598 -9.4853 18 1 2.7078 -1.9612 -11.2995 19 1 0.6356 -2.8935 -10.4527 20 6 3.5136 -1.5918 -5.1814 21 6 3.6647 -1.0621 -3.9151 22 6 3.4673 -1.2093 0.6846 23 1 4.1270 -0.3430 0.7326 24 6 4.0940 -2.3370 1.4727 25 6 3.1499 -3.5353 1.5714 26 6 1.8582 -3.0786 2.2580 27 6 1.1836 -2.0269 1.3805 28 6 2.0828 -0.7994 1.2195 29 1 2.1452 -0.2073 2.1326 30 1 -0.3633 0.4627 0.9177 31 1 -0.3634 0.5634 -0.8594 32 1 -0.3633 -1.0260 -0.0581 33 1 1.3193 -1.4910 -1.5665 34 1 2.3633 -0.1111 -2.0036 35 1 4.5371 -0.1461 -1.6097 36 1 5.3171 -1.6516 -1.0684 37 1 5.1928 -3.6673 -2.4083 38 1 4.9189 -4.6246 -4.6590 39 1 3.0621 -4.7593 -10.0422 40 1 3.0451 -1.0074 -5.9595 41 1 3.3138 -0.0631 -3.7028 42 1 4.3287 -1.9836 2.4768 43 1 5.0150 -2.6476 0.9793 44 1 2.9229 -3.9069 0.5722 45 1 3.6188 -4.3245 2.1592 46 1 1.1910 -3.9310 2.3857 47 1 2.0940 -2.6468 3.2306 48 1 0.2429 -1.7251 1.8409 49 1 0.9816 -2.4553 0.3988 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272904819.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:11 Heat of formation + Delta-G solvation = -30.259927 kcal Electronic energy + Delta-G solvation = -26840.282975 eV Core-core repulsion = 23345.195659 eV Total energy + Delta-G solvation = -3495.087316 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.58346 -40.65459 -38.45499 -36.26090 -35.05479 -34.24736 -31.91645 -31.68318 -30.06853 -29.72800 -27.73183 -27.08698 -24.89809 -23.97335 -23.55018 -22.64313 -22.01819 -20.37805 -19.81803 -19.75493 -18.77576 -17.14633 -16.46275 -16.44084 -16.25777 -16.09925 -15.76968 -15.48706 -15.21408 -15.14527 -14.91621 -14.41168 -14.24886 -14.01568 -13.84342 -13.66241 -13.43380 -13.33782 -13.11289 -13.02369 -12.87184 -12.70737 -12.37223 -12.36184 -12.28795 -12.11654 -11.94603 -11.86610 -11.71327 -11.44576 -11.22291 -11.14154 -10.80611 -10.77842 -10.68848 -9.75839 -9.14677 -8.87193 -8.47394 -6.15466 0.61317 0.69686 1.33969 1.42454 1.52424 2.17164 2.76739 3.06111 3.32531 3.53241 3.58385 3.67598 3.91520 4.02674 4.05455 4.16598 4.20979 4.22268 4.36059 4.38049 4.49746 4.54319 4.60098 4.62098 4.65603 4.71093 4.73689 4.78831 4.81896 4.83573 4.95391 5.02776 5.07348 5.10444 5.12804 5.15013 5.20310 5.20535 5.31545 5.40700 5.42248 5.47455 5.52605 5.54893 5.59494 5.71715 5.72078 5.82364 6.03151 6.20865 6.22178 6.32902 6.97441 7.79204 8.76301 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.019533 B = 0.003001 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.116511 B = 9328.527369 C = 9935.402697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.108 4.108 3 H 0.077 0.923 4 C 0.047 3.953 5 N -0.521 5.521 6 C 0.111 3.889 7 C -0.147 4.147 8 C -0.048 4.048 9 C -0.205 4.205 10 C 0.114 3.886 11 O -0.234 6.234 12 C -0.413 4.413 13 H 0.100 0.900 14 C -0.024 4.024 15 N -0.921 5.921 16 Si 1.019 2.981 17 H -0.252 1.252 18 H -0.267 1.267 19 H -0.268 1.268 20 C -0.242 4.242 21 C -0.062 4.062 22 C 0.078 3.922 23 H 0.044 0.956 24 C -0.098 4.098 25 C -0.112 4.112 26 C -0.115 4.115 27 C -0.104 4.104 28 C -0.079 4.079 29 H 0.102 0.898 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.045 0.955 36 H 0.086 0.914 37 H 0.142 0.858 38 H 0.111 0.889 39 H 0.272 0.728 40 H 0.116 0.884 41 H 0.132 0.868 42 H 0.078 0.922 43 H 0.056 0.944 44 H 0.049 0.951 45 H 0.061 0.939 46 H 0.057 0.943 47 H 0.070 0.930 48 H 0.066 0.934 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.666 9.960 24.768 26.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.128 4.128 3 H 0.095 0.905 4 C -0.080 4.080 5 N -0.245 5.245 6 C -0.016 4.016 7 C -0.148 4.148 8 C -0.066 4.066 9 C -0.224 4.224 10 C 0.064 3.936 11 O -0.141 6.141 12 C -0.489 4.489 13 H 0.117 0.883 14 C -0.221 4.221 15 N -0.560 5.560 16 Si 0.838 3.162 17 H -0.175 1.175 18 H -0.192 1.192 19 H -0.193 1.193 20 C -0.261 4.261 21 C -0.080 4.080 22 C -0.030 4.030 23 H 0.062 0.938 24 C -0.136 4.136 25 C -0.149 4.149 26 C -0.153 4.153 27 C -0.141 4.141 28 C -0.098 4.098 29 H 0.120 0.880 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.105 0.895 37 H 0.160 0.840 38 H 0.129 0.871 39 H 0.081 0.919 40 H 0.134 0.866 41 H 0.149 0.851 42 H 0.096 0.904 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.089 0.911 48 H 0.084 0.916 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.665 9.079 24.458 26.224 hybrid contribution -0.149 0.769 -1.348 1.559 sum -2.815 9.848 23.110 25.278 Atomic orbital electron populations 1.21780 0.93891 1.02059 1.02003 1.22612 0.96853 0.98782 0.94526 0.90452 1.22823 0.93132 0.95184 0.96907 1.63217 1.03378 1.55833 1.02031 1.20959 0.93735 0.97523 0.89384 1.19560 1.04408 0.95242 0.95637 1.20793 0.97006 0.94752 0.94071 1.20452 1.08244 1.00557 0.93195 1.19903 0.94750 0.93150 0.85821 1.83940 1.66471 1.46184 1.17502 1.21845 1.33537 0.99820 0.93672 0.88257 1.26592 0.98515 0.97753 0.99232 1.70195 1.45959 1.17406 1.22420 0.84530 0.77281 0.77768 0.76622 1.17523 1.19239 1.19313 1.21191 1.09507 0.96220 0.99172 1.20894 0.96525 0.99326 0.91287 1.21810 0.96729 0.96734 0.87706 0.93773 1.21013 0.98095 0.95001 0.99486 1.21416 0.95986 0.97272 1.00248 1.21504 0.96684 0.98323 0.98778 1.21474 0.97976 0.94963 0.99711 1.22317 0.93560 0.96444 0.97500 0.87963 0.91301 0.93060 0.92522 0.92777 0.93100 0.93683 0.89523 0.84024 0.87132 0.91856 0.86635 0.85069 0.90389 0.92526 0.93244 0.92051 0.92429 0.91146 0.91581 0.93178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 8.27 71.98 0.60 -1.60 16 2 C -0.11 -1.85 3.36 -9.27 -0.03 -1.88 16 3 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 4 C 0.05 1.09 4.99 86.77 0.43 1.52 16 5 N -0.52 -11.86 4.57 -873.43 -3.99 -15.85 16 6 C 0.11 2.68 4.70 85.56 0.40 3.08 16 7 C -0.15 -4.73 5.11 -19.83 -0.10 -4.83 16 8 C -0.05 -1.68 9.69 22.25 0.22 -1.46 16 9 C -0.21 -9.09 9.99 22.39 0.22 -8.87 16 10 C 0.11 5.86 6.65 22.58 0.15 6.01 16 11 O -0.23 -14.48 9.76 -22.68 -0.22 -14.71 16 12 C -0.41 -24.58 9.49 67.92 0.64 -23.94 16 13 H 0.10 5.46 5.20 -2.91 -0.02 5.45 16 14 C -0.02 -1.37 5.49 84.83 0.47 -0.91 16 15 N -0.92 -57.53 13.67 21.61 0.30 -57.23 16 16 Si 1.02 43.62 29.55 68.60 2.03 45.64 16 17 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 18 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 19 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 20 C -0.24 -10.84 9.17 22.39 0.21 -10.63 16 21 C -0.06 -2.19 8.72 22.25 0.19 -2.00 16 22 C 0.08 1.38 2.10 44.64 0.09 1.47 16 23 H 0.04 0.75 7.77 -2.39 -0.02 0.73 16 24 C -0.10 -1.59 5.60 29.96 0.17 -1.42 16 25 C -0.11 -1.97 5.91 30.63 0.18 -1.79 16 26 C -0.12 -1.77 5.92 30.57 0.18 -1.59 16 27 C -0.10 -1.71 3.66 30.49 0.11 -1.60 16 28 C -0.08 -1.22 3.49 -9.44 -0.03 -1.25 16 29 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 0.97 6.21 -2.39 -0.01 0.96 16 33 H 0.05 1.48 7.44 -2.38 -0.02 1.46 16 34 H 0.05 1.23 5.48 -2.39 -0.01 1.21 16 35 H 0.05 1.00 7.88 -2.39 -0.02 0.99 16 36 H 0.09 1.87 7.63 -2.39 -0.02 1.85 16 37 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 38 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 39 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 40 H 0.12 5.29 5.64 -2.91 -0.02 5.28 16 41 H 0.13 3.86 6.88 -2.91 -0.02 3.84 16 42 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.06 0.98 7.75 -2.39 -0.02 0.96 16 44 H 0.05 1.14 8.05 -2.39 -0.02 1.12 16 45 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.07 0.95 7.42 -2.39 -0.02 0.93 16 49 H 0.05 1.08 6.24 -2.39 -0.01 1.07 16 Total: -1.00 -69.50 370.33 3.13 -66.37 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: 0.92 Total: 27.47 kcal Atomic # 6 Polarization: -55.79 SS G_CDS: 4.10 Total: -51.69 kcal Atomic # 7 Polarization: -69.39 SS G_CDS: -3.70 Total: -73.09 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.22 Total: -14.71 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -69.50 3.13 -66.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272904819.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.105 kcal (2) G-P(sol) polarization free energy of solvation -69.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds