Wall clock time and date at job start Tue Mar 31 2020 11:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46902 * 110.99723 * 2 1 4 4 C 1.53003 * 109.46994 * 272.53462 * 3 2 1 5 5 C 1.53000 * 109.47214 * 180.02562 * 4 3 2 6 6 C 1.50696 * 109.47110 * 180.02562 * 5 4 3 7 7 H 1.07997 * 120.00204 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99676 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99412 * 179.97438 * 8 6 5 10 10 Si 1.86794 * 120.00308 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.46822 * 90.00055 * 10 8 6 12 12 H 1.48504 * 109.47101 * 330.00488 * 10 8 6 13 13 H 1.48497 * 109.47620 * 210.00135 * 10 8 6 14 14 C 1.46900 * 110.99889 * 123.95067 * 2 1 3 15 15 C 1.50701 * 109.62455 * 50.68541 * 14 2 1 16 16 C 1.38232 * 120.00101 * 205.32108 * 15 14 2 17 17 C 1.38239 * 120.00229 * 179.76955 * 16 15 14 18 18 C 1.38243 * 119.99563 * 0.50180 * 17 16 15 19 19 C 1.38231 * 119.99968 * 359.74947 * 18 17 16 20 20 C 1.38237 * 120.00494 * 359.97438 * 19 18 17 21 21 C 1.53228 * 109.62724 * 290.30410 * 14 2 1 22 22 C 1.52957 * 109.40308 * 294.91185 * 21 14 2 23 23 C 1.52951 * 109.82089 * 296.40407 * 22 21 14 24 24 C 1.53229 * 109.40513 * 63.59735 * 23 22 21 25 25 C 1.51267 * 109.62097 * 171.25556 * 14 2 1 26 26 O 1.20757 * 120.85010 * 248.34378 * 25 14 2 27 27 H 1.08995 * 109.47301 * 65.04358 * 1 2 3 28 28 H 1.09003 * 109.47198 * 185.04656 * 1 2 3 29 29 H 1.08997 * 109.47121 * 305.04262 * 1 2 3 30 30 H 1.08992 * 109.47184 * 152.53525 * 3 2 1 31 31 H 1.09005 * 109.47366 * 32.53227 * 3 2 1 32 32 H 1.09001 * 109.47384 * 60.00095 * 4 3 2 33 33 H 1.09005 * 109.46872 * 300.00068 * 4 3 2 34 34 H 1.09001 * 109.47143 * 59.99610 * 5 4 3 35 35 H 1.09005 * 109.46455 * 299.99635 * 5 4 3 36 36 H 0.97003 * 119.99538 * 180.02562 * 9 8 6 37 37 H 1.08001 * 119.99903 * 359.97438 * 16 15 14 38 38 H 1.07993 * 120.00027 * 180.22763 * 17 16 15 39 39 H 1.07997 * 119.99722 * 179.72985 * 18 17 16 40 40 H 1.07996 * 120.00242 * 179.97438 * 19 18 17 41 41 H 1.07991 * 120.00369 * 179.97438 * 20 19 18 42 42 H 1.09000 * 109.48421 * 54.89428 * 21 14 2 43 43 H 1.09000 * 109.47785 * 174.93388 * 21 14 2 44 44 H 1.09000 * 109.41010 * 56.51040 * 22 21 14 45 45 H 1.09000 * 109.40944 * 176.29619 * 22 21 14 46 46 H 1.09001 * 109.48835 * 183.58018 * 23 22 21 47 47 H 1.09001 * 109.48343 * 303.62134 * 23 22 21 48 48 H 1.08998 * 109.62441 * 65.09018 * 24 23 22 49 49 H 1.09007 * 109.62774 * 185.46849 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 2.1186 1.8704 -1.4411 5 6 2.6674 3.2986 -1.4412 6 6 2.7882 3.7903 -2.8606 7 1 2.5025 3.1482 -3.6806 8 6 3.2644 5.0595 -3.1123 9 7 3.3702 5.4883 -4.3511 10 14 3.7592 6.1698 -1.6940 11 1 5.1958 5.9618 -1.3806 12 1 2.9396 5.8423 -0.4997 13 1 3.5358 7.5878 -2.0741 14 6 1.9955 -0.7659 1.1376 15 6 1.3372 -2.1208 1.1836 16 6 1.2457 -2.8045 2.3815 17 6 0.6377 -4.0452 2.4246 18 6 0.1304 -4.6068 1.2677 19 6 0.2265 -3.9254 0.0689 20 6 0.8294 -2.6821 0.0268 21 6 1.7124 -0.0117 2.4410 22 6 2.4929 1.3037 2.4468 23 6 3.9949 1.0156 2.4328 24 6 4.3640 0.3000 1.1291 25 6 3.4922 -0.9286 0.9914 26 8 3.9788 -2.0116 0.7710 27 1 -0.3633 0.4336 -0.9317 28 1 -0.3634 -1.0237 0.0904 29 1 -0.3633 0.5901 0.8413 30 1 2.9768 1.3840 0.4739 31 1 1.3167 2.0212 0.5527 32 1 1.1371 1.8580 -1.9151 33 1 2.7973 1.2207 -1.9938 34 1 3.6490 3.3107 -0.9673 35 1 1.9890 3.9485 -0.8884 36 1 3.7056 6.3811 -4.5282 37 1 1.6464 -2.3678 3.2844 38 1 0.5629 -4.5777 3.3612 39 1 -0.3408 -5.5780 1.3006 40 1 -0.1694 -4.3642 -0.8350 41 1 0.9049 -2.1500 -0.9098 42 1 0.6454 0.1984 2.5151 43 1 2.0226 -0.6222 3.2890 44 1 2.2275 1.8862 1.5645 45 1 2.2410 1.8705 3.3431 46 1 4.5458 1.9537 2.5011 47 1 4.2512 0.3807 3.2810 48 1 4.1926 0.9670 0.2842 49 1 5.4134 0.0065 1.1568 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276260415.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:14 Heat of formation + Delta-G solvation = 47.308802 kcal Electronic energy + Delta-G solvation = -27899.135414 eV Core-core repulsion = 24407.411731 eV Total energy + Delta-G solvation = -3491.723683 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.75055 -38.85105 -38.02768 -35.05389 -34.25780 -32.54001 -31.31815 -30.71593 -29.84732 -28.33895 -27.56405 -24.97042 -23.96024 -22.78682 -22.19532 -21.63406 -20.84799 -20.01082 -18.82147 -17.24848 -16.68941 -16.44006 -15.88921 -15.78676 -14.94899 -14.89729 -14.62744 -14.40611 -14.15852 -14.02258 -13.72069 -13.46272 -13.22435 -13.10314 -12.83133 -12.78547 -12.70894 -12.52190 -12.22943 -11.86272 -11.78389 -11.42472 -11.33727 -11.19625 -11.03461 -10.96921 -10.83258 -10.65555 -10.09929 -9.82261 -9.66331 -9.55013 -9.44249 -9.17807 -8.92890 -8.69717 -8.54670 -8.12155 -6.04513 -4.02469 1.24992 1.35569 1.90912 3.28339 3.36202 3.37912 3.62272 3.84037 4.15723 4.30279 4.43543 4.54989 4.65514 4.82810 4.87419 4.90216 4.95686 5.06209 5.08081 5.22428 5.28959 5.30750 5.37178 5.43966 5.49546 5.53455 5.57932 5.60457 5.67089 5.76320 5.84298 5.89815 5.95607 5.99252 6.00737 6.04646 6.10994 6.22075 6.35875 6.42256 6.45529 6.48890 6.57443 6.87047 6.92793 7.03548 7.13073 7.33124 7.42225 7.48596 7.79157 8.54721 9.01747 9.57719 11.09121 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.019805 B = 0.003752 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.469111 B = 7460.144988 C = 8075.153039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 N -0.513 5.513 3 C -0.001 4.001 4 C -0.098 4.098 5 C -0.013 4.013 6 C -0.518 4.518 7 H 0.072 0.928 8 C 0.065 3.935 9 N -0.904 5.904 10 Si 0.879 3.121 11 H -0.277 1.277 12 H -0.265 1.265 13 H -0.289 1.289 14 C 0.105 3.895 15 C -0.064 4.064 16 C -0.112 4.112 17 C -0.125 4.125 18 C -0.121 4.121 19 C -0.126 4.126 20 C -0.088 4.088 21 C -0.137 4.137 22 C -0.194 4.194 23 C -0.112 4.112 24 C -0.192 4.192 25 C 0.387 3.613 26 O -0.441 6.441 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.028 0.972 30 H 0.113 0.887 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.009 0.991 35 H 0.014 0.986 36 H 0.262 0.738 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.122 0.878 41 H 0.137 0.863 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.129 0.871 45 H 0.068 0.932 46 H 0.079 0.921 47 H 0.063 0.937 48 H 0.129 0.871 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.491 -15.155 17.179 23.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.238 5.238 3 C -0.126 4.126 4 C -0.136 4.136 5 C -0.051 4.051 6 C -0.556 4.556 7 H 0.090 0.910 8 C -0.136 4.136 9 N -0.543 5.543 10 Si 0.706 3.294 11 H -0.203 1.203 12 H -0.190 1.190 13 H -0.215 1.215 14 C 0.014 3.986 15 C -0.065 4.065 16 C -0.130 4.130 17 C -0.143 4.143 18 C -0.139 4.139 19 C -0.144 4.144 20 C -0.106 4.106 21 C -0.175 4.175 22 C -0.230 4.230 23 C -0.150 4.150 24 C -0.228 4.228 25 C 0.260 3.740 26 O -0.311 6.311 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.047 0.953 30 H 0.131 0.869 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.028 0.972 35 H 0.032 0.968 36 H 0.072 0.928 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.140 0.860 41 H 0.155 0.845 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.146 0.854 45 H 0.087 0.913 46 H 0.098 0.902 47 H 0.082 0.918 48 H 0.146 0.854 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.008 -15.831 16.522 23.423 hybrid contribution -0.044 1.136 1.434 1.830 sum -5.052 -14.695 17.955 23.745 Atomic orbital electron populations 1.22773 0.86749 1.02566 1.01618 1.62188 1.08422 1.14784 1.38371 1.23904 1.01852 0.86638 1.00222 1.21516 1.01425 0.97736 0.92903 1.19563 0.95320 0.92201 0.98022 1.21128 1.43107 0.99841 0.91529 0.91006 1.25047 0.95224 0.97917 0.95384 1.69920 1.46959 1.18579 1.18822 0.86798 0.79269 0.79970 0.83355 1.20287 1.19013 1.21467 1.20680 0.93822 0.92255 0.91803 1.19366 0.98686 0.94546 0.93882 1.20992 0.99546 0.95242 0.97264 1.21026 0.99361 0.95600 0.98318 1.21135 1.00068 0.99704 0.92954 1.21176 1.00235 0.95078 0.97930 1.21188 0.96045 0.94689 0.98652 1.22241 1.01601 0.96876 0.96830 1.23073 0.94854 0.98358 1.06760 1.21508 0.96600 1.00893 0.95960 1.22737 1.00809 0.97844 1.01451 1.24461 0.90180 0.89442 0.69959 1.90381 1.77098 1.29716 1.33937 0.90361 0.90387 0.95312 0.86946 0.92903 0.92686 0.92148 0.97232 0.96802 0.92774 0.86355 0.86305 0.86364 0.86037 0.84487 0.90522 0.91120 0.85357 0.91312 0.90224 0.91799 0.85409 0.88951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 8.19 60.07 0.49 0.62 16 2 N -0.51 -6.89 3.71 -257.07 -0.95 -7.85 16 3 C 0.00 -0.02 2.40 -3.82 -0.01 -0.03 16 4 C -0.10 -1.82 5.41 -26.73 -0.14 -1.97 16 5 C -0.01 -0.30 4.04 -27.88 -0.11 -0.41 16 6 C -0.52 -14.45 9.66 -34.44 -0.33 -14.78 16 7 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 8 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 9 N -0.90 -27.68 13.96 55.43 0.77 -26.90 16 10 Si 0.88 21.13 27.47 -169.99 -4.67 16.46 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 C 0.11 1.32 0.53 -133.51 -0.07 1.25 16 15 C -0.06 -0.81 3.32 -104.62 -0.35 -1.16 16 16 C -0.11 -1.28 9.15 -39.58 -0.36 -1.64 16 17 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 18 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 19 C -0.13 -1.38 10.05 -39.58 -0.40 -1.78 16 20 C -0.09 -1.11 7.12 -39.58 -0.28 -1.39 16 21 C -0.14 -1.43 4.14 -26.64 -0.11 -1.54 16 22 C -0.19 -2.01 5.46 -26.78 -0.15 -2.16 16 23 C -0.11 -1.14 5.77 -26.64 -0.15 -1.29 16 24 C -0.19 -2.36 5.58 -27.48 -0.15 -2.51 16 25 C 0.39 5.50 6.07 -28.48 -0.17 5.32 16 26 O -0.44 -7.54 16.94 6.00 0.10 -7.44 16 27 H 0.08 0.97 7.73 -51.93 -0.40 0.57 16 28 H 0.08 0.89 4.71 -51.93 -0.24 0.64 16 29 H 0.03 0.32 6.71 -51.93 -0.35 -0.03 16 30 H 0.11 1.54 1.41 -51.93 -0.07 1.47 16 31 H 0.05 0.74 6.21 -51.93 -0.32 0.42 16 32 H 0.05 1.05 7.73 -51.93 -0.40 0.65 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.01 0.21 7.57 -51.93 -0.39 -0.19 16 35 H 0.01 0.31 7.20 -51.93 -0.37 -0.07 16 36 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.12 1.18 6.19 -52.49 -0.33 0.85 16 38 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 39 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.14 1.81 6.75 -52.49 -0.35 1.45 16 42 H 0.08 0.78 6.69 -51.93 -0.35 0.43 16 43 H 0.07 0.68 6.24 -51.93 -0.32 0.35 16 44 H 0.13 1.51 2.61 -84.20 -0.22 1.29 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 48 H 0.13 1.71 5.59 -51.93 -0.29 1.41 16 49 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 359.79 15.07 5.42 5.42 Total: -1.00 -31.71 359.79 -9.91 -41.62 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -7.39 Total: 3.66 kcal Atomic # 6 Polarization: -21.77 SS G_CDS: -3.20 Total: -24.97 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: -0.18 Total: -34.75 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: 0.10 Total: -7.44 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.71 -9.91 -41.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276260415.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.933 kcal (2) G-P(sol) polarization free energy of solvation -31.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds