Wall clock time and date at job start Tue Mar 31 2020 11:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46902 * 110.99723 * 2 1 4 4 C 1.53003 * 109.46994 * 272.53462 * 3 2 1 5 5 C 1.53000 * 109.47214 * 180.02562 * 4 3 2 6 6 C 1.50696 * 109.47110 * 180.02562 * 5 4 3 7 7 H 1.07997 * 120.00204 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99676 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99412 * 179.97438 * 8 6 5 10 10 Si 1.86794 * 120.00308 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.46822 * 90.00055 * 10 8 6 12 12 H 1.48504 * 109.47101 * 330.00488 * 10 8 6 13 13 H 1.48497 * 109.47620 * 210.00135 * 10 8 6 14 14 C 1.46900 * 110.99889 * 123.95067 * 2 1 3 15 15 C 1.50701 * 109.62455 * 50.68541 * 14 2 1 16 16 C 1.38232 * 120.00101 * 205.32108 * 15 14 2 17 17 C 1.38239 * 120.00229 * 179.76955 * 16 15 14 18 18 C 1.38243 * 119.99563 * 0.50180 * 17 16 15 19 19 C 1.38231 * 119.99968 * 359.74947 * 18 17 16 20 20 C 1.38237 * 120.00494 * 359.97438 * 19 18 17 21 21 C 1.53228 * 109.62724 * 290.30410 * 14 2 1 22 22 C 1.52957 * 109.40308 * 294.91185 * 21 14 2 23 23 C 1.52951 * 109.82089 * 296.40407 * 22 21 14 24 24 C 1.53229 * 109.40513 * 63.59735 * 23 22 21 25 25 C 1.51267 * 109.62097 * 171.25556 * 14 2 1 26 26 O 1.20757 * 120.85010 * 248.34378 * 25 14 2 27 27 H 1.08995 * 109.47301 * 65.04358 * 1 2 3 28 28 H 1.09003 * 109.47198 * 185.04656 * 1 2 3 29 29 H 1.08997 * 109.47121 * 305.04262 * 1 2 3 30 30 H 1.08992 * 109.47184 * 152.53525 * 3 2 1 31 31 H 1.09005 * 109.47366 * 32.53227 * 3 2 1 32 32 H 1.09001 * 109.47384 * 60.00095 * 4 3 2 33 33 H 1.09005 * 109.46872 * 300.00068 * 4 3 2 34 34 H 1.09001 * 109.47143 * 59.99610 * 5 4 3 35 35 H 1.09005 * 109.46455 * 299.99635 * 5 4 3 36 36 H 0.97003 * 119.99538 * 180.02562 * 9 8 6 37 37 H 1.08001 * 119.99903 * 359.97438 * 16 15 14 38 38 H 1.07993 * 120.00027 * 180.22763 * 17 16 15 39 39 H 1.07997 * 119.99722 * 179.72985 * 18 17 16 40 40 H 1.07996 * 120.00242 * 179.97438 * 19 18 17 41 41 H 1.07991 * 120.00369 * 179.97438 * 20 19 18 42 42 H 1.09000 * 109.48421 * 54.89428 * 21 14 2 43 43 H 1.09000 * 109.47785 * 174.93388 * 21 14 2 44 44 H 1.09000 * 109.41010 * 56.51040 * 22 21 14 45 45 H 1.09000 * 109.40944 * 176.29619 * 22 21 14 46 46 H 1.09001 * 109.48835 * 183.58018 * 23 22 21 47 47 H 1.09001 * 109.48343 * 303.62134 * 23 22 21 48 48 H 1.08998 * 109.62441 * 65.09018 * 24 23 22 49 49 H 1.09007 * 109.62774 * 185.46849 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 2.1186 1.8704 -1.4411 5 6 2.6674 3.2986 -1.4412 6 6 2.7882 3.7903 -2.8606 7 1 2.5025 3.1482 -3.6806 8 6 3.2644 5.0595 -3.1123 9 7 3.3702 5.4883 -4.3511 10 14 3.7592 6.1698 -1.6940 11 1 5.1958 5.9618 -1.3806 12 1 2.9396 5.8423 -0.4997 13 1 3.5358 7.5878 -2.0741 14 6 1.9955 -0.7659 1.1376 15 6 1.3372 -2.1208 1.1836 16 6 1.2457 -2.8045 2.3815 17 6 0.6377 -4.0452 2.4246 18 6 0.1304 -4.6068 1.2677 19 6 0.2265 -3.9254 0.0689 20 6 0.8294 -2.6821 0.0268 21 6 1.7124 -0.0117 2.4410 22 6 2.4929 1.3037 2.4468 23 6 3.9949 1.0156 2.4328 24 6 4.3640 0.3000 1.1291 25 6 3.4922 -0.9286 0.9914 26 8 3.9788 -2.0116 0.7710 27 1 -0.3633 0.4336 -0.9317 28 1 -0.3634 -1.0237 0.0904 29 1 -0.3633 0.5901 0.8413 30 1 2.9768 1.3840 0.4739 31 1 1.3167 2.0212 0.5527 32 1 1.1371 1.8580 -1.9151 33 1 2.7973 1.2207 -1.9938 34 1 3.6490 3.3107 -0.9673 35 1 1.9890 3.9485 -0.8884 36 1 3.7056 6.3811 -4.5282 37 1 1.6464 -2.3678 3.2844 38 1 0.5629 -4.5777 3.3612 39 1 -0.3408 -5.5780 1.3006 40 1 -0.1694 -4.3642 -0.8350 41 1 0.9049 -2.1500 -0.9098 42 1 0.6454 0.1984 2.5151 43 1 2.0226 -0.6222 3.2890 44 1 2.2275 1.8862 1.5645 45 1 2.2410 1.8705 3.3431 46 1 4.5458 1.9537 2.5011 47 1 4.2512 0.3807 3.2810 48 1 4.1926 0.9670 0.2842 49 1 5.4134 0.0065 1.1568 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276260415.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:13 Heat of formation + Delta-G solvation = 29.302152 kcal Electronic energy + Delta-G solvation = -27899.916241 eV Core-core repulsion = 24407.411731 eV Total energy + Delta-G solvation = -3492.504510 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.72855 -39.72367 -39.15912 -36.13693 -35.73324 -34.18970 -32.56710 -31.75099 -30.73246 -29.28879 -29.02934 -26.25316 -25.08955 -23.64547 -23.29096 -22.58630 -22.36838 -21.06576 -19.89969 -18.87030 -18.06582 -17.44348 -16.92258 -16.75568 -16.28069 -15.91622 -15.85152 -15.54061 -15.31176 -15.15040 -14.76282 -14.62647 -14.44506 -14.26322 -14.11265 -13.80487 -13.73459 -13.66079 -13.49682 -13.03236 -12.87818 -12.71597 -12.64953 -12.25075 -12.11535 -11.97187 -11.85593 -11.75362 -11.72022 -11.40018 -11.37483 -11.20214 -10.72833 -10.64713 -10.44843 -9.76895 -9.56071 -9.14555 -8.24931 -6.29471 0.41261 0.51749 0.82201 1.39999 1.42674 1.54347 2.40783 2.73888 2.83411 3.10818 3.20111 3.39962 3.69499 3.78581 3.96696 4.00390 4.07788 4.11627 4.17835 4.25345 4.31103 4.36108 4.41411 4.51883 4.57019 4.62830 4.65124 4.70192 4.78842 4.79935 4.87747 4.88471 4.97442 5.03909 5.08038 5.09594 5.14275 5.16757 5.18669 5.26629 5.36588 5.55287 5.56625 5.62970 5.64421 5.67007 5.71289 6.02677 6.07720 6.14289 6.35090 6.41587 6.79742 7.34990 8.92421 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.019805 B = 0.003752 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.469111 B = 7460.144988 C = 8075.153039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.528 5.528 3 C 0.012 3.988 4 C -0.089 4.089 5 C -0.008 4.008 6 C -0.532 4.532 7 H 0.023 0.977 8 C -0.002 4.002 9 N -0.957 5.957 10 Si 0.954 3.046 11 H -0.265 1.265 12 H -0.235 1.235 13 H -0.289 1.289 14 C 0.107 3.893 15 C -0.080 4.080 16 C -0.122 4.122 17 C -0.126 4.126 18 C -0.123 4.123 19 C -0.134 4.134 20 C -0.109 4.109 21 C -0.132 4.132 22 C -0.192 4.192 23 C -0.108 4.108 24 C -0.194 4.194 25 C 0.383 3.617 26 O -0.479 6.479 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.042 0.958 30 H 0.126 0.874 31 H 0.068 0.932 32 H 0.041 0.959 33 H 0.038 0.962 34 H 0.025 0.975 35 H 0.025 0.975 36 H 0.265 0.735 37 H 0.133 0.867 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.135 0.865 41 H 0.120 0.880 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.114 0.886 45 H 0.090 0.910 46 H 0.093 0.907 47 H 0.077 0.923 48 H 0.117 0.883 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.794 -15.246 21.335 26.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.253 5.253 3 C -0.114 4.114 4 C -0.127 4.127 5 C -0.046 4.046 6 C -0.570 4.570 7 H 0.041 0.959 8 C -0.198 4.198 9 N -0.598 5.598 10 Si 0.776 3.224 11 H -0.190 1.190 12 H -0.158 1.158 13 H -0.215 1.215 14 C 0.017 3.983 15 C -0.080 4.080 16 C -0.140 4.140 17 C -0.144 4.144 18 C -0.141 4.141 19 C -0.152 4.152 20 C -0.128 4.128 21 C -0.171 4.171 22 C -0.228 4.228 23 C -0.146 4.146 24 C -0.231 4.231 25 C 0.258 3.742 26 O -0.351 6.351 27 H 0.086 0.914 28 H 0.101 0.899 29 H 0.060 0.940 30 H 0.143 0.857 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.043 0.957 35 H 0.044 0.956 36 H 0.073 0.927 37 H 0.151 0.849 38 H 0.163 0.837 39 H 0.162 0.838 40 H 0.153 0.847 41 H 0.138 0.862 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.132 0.868 45 H 0.109 0.891 46 H 0.112 0.888 47 H 0.096 0.904 48 H 0.135 0.865 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.332 -15.938 20.692 26.657 hybrid contribution 0.021 1.032 0.006 1.032 sum -5.311 -14.906 20.698 26.054 Atomic orbital electron populations 1.22742 0.85890 1.03110 1.01561 1.61986 1.09277 1.14189 1.39800 1.23800 1.03204 0.87521 0.96840 1.21338 0.99798 0.95629 0.95972 1.19492 0.96526 0.94130 0.94455 1.21529 1.42607 0.99554 0.93298 0.95870 1.26130 0.95162 0.99860 0.98633 1.70103 1.48601 1.19316 1.21800 0.85608 0.79773 0.76940 0.80058 1.18959 1.15794 1.21549 1.20664 0.92581 0.92607 0.92459 1.19472 0.99277 0.94837 0.94430 1.21231 0.99734 0.95791 0.97240 1.21401 0.98270 0.95243 0.99500 1.21481 0.99553 1.00589 0.92434 1.21414 0.99979 0.94637 0.99195 1.21179 0.97630 0.95699 0.98244 1.22240 1.02139 0.96913 0.95775 1.23002 0.94745 0.98044 1.07025 1.21549 0.96751 1.01471 0.94790 1.22775 1.00836 0.97008 1.02457 1.24985 0.91372 0.89389 0.68450 1.90362 1.77872 1.31173 1.35707 0.91429 0.89862 0.93983 0.85709 0.91429 0.94043 0.94266 0.95658 0.95628 0.92661 0.84940 0.83674 0.83793 0.84730 0.86211 0.89858 0.89757 0.86826 0.89139 0.88813 0.90427 0.86540 0.88620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.33 8.19 127.69 1.05 1.37 16 2 N -0.53 -13.98 3.71 -967.23 -3.59 -17.57 16 3 C 0.01 0.32 2.40 86.30 0.21 0.53 16 4 C -0.09 -3.38 5.41 30.60 0.17 -3.21 16 5 C -0.01 -0.36 4.04 29.85 0.12 -0.24 16 6 C -0.53 -30.62 9.66 25.60 0.25 -30.37 16 7 H 0.02 1.50 7.99 -2.91 -0.02 1.47 16 8 C 0.00 -0.11 5.47 84.66 0.46 0.35 16 9 N -0.96 -60.60 13.96 21.45 0.30 -60.30 16 10 Si 0.95 42.81 27.47 68.60 1.88 44.70 16 11 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 12 H -0.24 -9.34 6.54 99.48 0.65 -8.69 16 13 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 14 C 0.11 2.57 0.53 2.29 0.00 2.57 16 15 C -0.08 -1.94 3.32 -19.86 -0.07 -2.01 16 16 C -0.12 -2.52 9.15 22.27 0.20 -2.32 16 17 C -0.13 -2.26 10.05 22.27 0.22 -2.03 16 18 C -0.12 -2.20 10.05 22.27 0.22 -1.98 16 19 C -0.13 -2.84 10.05 22.27 0.22 -2.61 16 20 C -0.11 -2.77 7.12 22.27 0.16 -2.61 16 21 C -0.13 -2.38 4.14 30.66 0.13 -2.25 16 22 C -0.19 -3.26 5.46 30.56 0.17 -3.09 16 23 C -0.11 -1.83 5.77 30.65 0.18 -1.66 16 24 C -0.19 -4.49 5.58 30.11 0.17 -4.32 16 25 C 0.38 10.61 6.07 29.46 0.18 10.79 16 26 O -0.48 -16.45 16.94 -1.44 -0.02 -16.48 16 27 H 0.07 1.70 7.73 -2.39 -0.02 1.68 16 28 H 0.08 1.88 4.71 -2.39 -0.01 1.87 16 29 H 0.04 0.87 6.71 -2.39 -0.02 0.85 16 30 H 0.13 3.21 1.41 -2.39 0.00 3.20 16 31 H 0.07 1.71 6.21 -2.38 -0.01 1.70 16 32 H 0.04 1.64 7.73 -2.39 -0.02 1.62 16 33 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.03 1.04 7.57 -2.39 -0.02 1.03 16 35 H 0.03 1.08 7.20 -2.38 -0.02 1.06 16 36 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 37 H 0.13 2.26 6.19 -2.91 -0.02 2.24 16 38 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 39 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 40 H 0.13 2.34 8.06 -2.91 -0.02 2.31 16 41 H 0.12 3.34 6.75 -2.91 -0.02 3.32 16 42 H 0.08 1.42 6.69 -2.39 -0.02 1.40 16 43 H 0.08 1.31 6.24 -2.39 -0.01 1.29 16 44 H 0.11 2.28 2.61 -32.70 -0.09 2.20 16 45 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.12 3.00 5.59 -2.39 -0.01 2.98 16 49 H 0.10 2.12 8.14 -2.38 -0.02 2.10 16 Total: -1.00 -71.81 359.79 3.42 -68.39 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: 0.82 Total: 24.34 kcal Atomic # 6 Polarization: -47.11 SS G_CDS: 4.03 Total: -43.08 kcal Atomic # 7 Polarization: -74.58 SS G_CDS: -3.29 Total: -77.87 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.02 Total: -16.48 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.88 Total: 44.70 kcal Total: -71.81 3.42 -68.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276260415.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.690 kcal (2) G-P(sol) polarization free energy of solvation -71.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds