Wall clock time and date at job start Tue Mar 31 2020 11:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47070 * 2 1 4 4 C 1.50698 * 109.46728 * 120.00120 * 2 1 3 5 5 C 1.38233 * 120.00493 * 337.64326 * 4 2 1 6 6 C 1.38235 * 120.00389 * 179.79004 * 5 4 2 7 7 C 1.38231 * 119.99534 * 0.44521 * 6 5 4 8 8 C 1.38236 * 120.00217 * 359.80925 * 7 6 5 9 9 C 1.38231 * 120.00040 * 359.97438 * 8 7 6 10 10 N 1.46496 * 109.47068 * 240.00072 * 2 1 3 11 11 C 1.46507 * 120.00094 * 119.38025 * 10 2 1 12 12 C 1.52996 * 109.47079 * 273.42471 * 11 10 2 13 13 C 1.53776 * 113.61396 * 184.36232 * 12 11 10 14 14 C 1.53777 * 87.17947 * 220.06205 * 13 12 11 15 15 C 1.53789 * 87.07656 * 25.39112 * 14 13 12 16 16 C 1.34782 * 120.00124 * 299.37784 * 10 2 1 17 17 O 1.21276 * 119.99736 * 355.20849 * 16 10 2 18 18 C 1.50699 * 119.99999 * 175.20658 * 16 10 2 19 19 C 1.52997 * 109.47223 * 185.52438 * 18 16 10 20 20 C 1.50706 * 109.47083 * 180.02562 * 19 18 16 21 21 H 1.07995 * 120.00202 * 359.97438 * 20 19 18 22 22 C 1.37872 * 119.99519 * 180.02562 * 20 19 18 23 23 N 1.31517 * 120.00350 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99740 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47331 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47503 * 119.99658 * 24 22 20 27 27 H 1.48510 * 109.47034 * 239.99833 * 24 22 20 28 28 H 1.09005 * 109.46690 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47374 * 300.00268 * 1 2 3 30 30 H 1.09002 * 109.46983 * 60.00027 * 1 2 3 31 31 H 1.08001 * 119.99306 * 0.02562 * 5 4 2 32 32 H 1.07998 * 120.00232 * 180.27912 * 6 5 4 33 33 H 1.08005 * 119.99803 * 179.83355 * 7 6 5 34 34 H 1.08002 * 119.99679 * 179.97438 * 8 7 6 35 35 H 1.08005 * 119.99734 * 179.97438 * 9 8 7 36 36 H 1.08999 * 109.47391 * 153.42025 * 11 10 2 37 37 H 1.09000 * 109.46595 * 33.42452 * 11 10 2 38 38 H 1.09000 * 112.90968 * 315.62127 * 12 11 10 39 39 H 1.09004 * 113.61283 * 105.46990 * 13 12 11 40 40 H 1.08996 * 113.61946 * 334.65821 * 13 12 11 41 41 H 1.08995 * 113.61925 * 139.93546 * 14 13 12 42 42 H 1.08993 * 113.61633 * 270.85042 * 14 13 12 43 43 H 1.09000 * 113.61186 * 89.11975 * 15 14 13 44 44 H 1.08999 * 113.61532 * 219.92970 * 15 14 13 45 45 H 1.09008 * 109.47501 * 305.52597 * 18 16 10 46 46 H 1.09003 * 109.47266 * 65.52277 * 18 16 10 47 47 H 1.08999 * 109.46798 * 299.99876 * 19 18 16 48 48 H 1.08994 * 109.47236 * 59.99956 * 19 18 16 49 49 H 0.97005 * 119.99711 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.2189 -0.8265 2.3421 6 6 1.6780 -1.4820 3.4692 7 6 2.9539 -2.0134 3.4880 8 6 3.7693 -1.8927 2.3782 9 6 3.3086 -1.2412 1.2495 10 7 2.0184 -0.6906 -1.1961 11 6 2.8494 0.0253 -2.1674 12 6 1.9508 0.7484 -3.1726 13 6 2.7269 1.4463 -4.3019 14 6 1.7286 2.6081 -4.1669 15 6 1.5149 2.1519 -2.7139 16 6 1.7031 -1.9846 -1.4032 17 8 1.0892 -2.6017 -0.5587 18 6 2.1135 -2.6645 -2.6839 19 6 1.5192 -4.0737 -2.7263 20 6 1.9301 -4.7538 -4.0069 21 1 2.5525 -4.2329 -4.7194 22 6 1.5106 -6.0407 -4.2692 23 7 0.7522 -6.6748 -3.4018 24 14 2.0204 -6.8840 -5.8561 25 1 2.8676 -5.9633 -6.6560 26 1 2.7892 -8.1141 -5.5381 27 1 0.8093 -7.2449 -6.6361 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2232 -0.4083 2.3285 32 1 1.0408 -1.5765 4.3361 33 1 3.3137 -2.5232 4.3696 34 1 4.7664 -2.3076 2.3931 35 1 3.9458 -1.1466 0.3827 36 1 3.4860 -0.6852 -2.6945 37 1 3.4713 0.7534 -1.6465 38 1 1.1266 0.1293 -3.5269 39 1 2.6663 0.9275 -5.2587 40 1 3.7478 1.7139 -4.0296 41 1 2.1896 3.5921 -4.2522 42 1 0.8436 2.4984 -4.7935 43 1 2.2042 2.6121 -2.0059 44 1 0.4761 2.2043 -2.3881 45 1 1.7465 -2.0896 -3.5343 46 1 3.2008 -2.7271 -2.7298 47 1 1.8863 -4.6485 -1.8761 48 1 0.4320 -4.0110 -2.6805 49 1 0.4574 -7.5804 -3.5863 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291836371.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:30 Heat of formation + Delta-G solvation = -0.571339 kcal Electronic energy + Delta-G solvation = -27138.352668 eV Core-core repulsion = 23644.552746 eV Total energy + Delta-G solvation = -3493.799922 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.37397 -38.87418 -38.20577 -35.37581 -33.55194 -32.70307 -30.84948 -30.56701 -29.01022 -27.78518 -25.89574 -25.62569 -23.95039 -23.04090 -22.20726 -21.70830 -20.41703 -19.46909 -18.32193 -17.13245 -16.68659 -16.06107 -15.69029 -15.41294 -15.29479 -14.70535 -14.61061 -14.36637 -14.17365 -13.64843 -13.40983 -13.19737 -13.09682 -12.71024 -12.56436 -12.50152 -12.20818 -12.13916 -11.83318 -11.68930 -11.58134 -11.42791 -11.07182 -10.94485 -10.88168 -10.73875 -10.64709 -10.55577 -10.43806 -10.24948 -9.88720 -9.57528 -9.11903 -8.97228 -8.70658 -8.45027 -8.31515 -8.24301 -5.93799 -3.97875 1.54267 1.61431 3.28617 3.32531 3.33520 3.40725 3.43871 4.00737 4.48239 4.50194 4.59050 4.64951 4.76840 4.82763 5.00839 5.09039 5.15382 5.26342 5.27802 5.32993 5.41230 5.42225 5.54679 5.59157 5.60590 5.64750 5.66039 5.74930 5.78645 5.79809 5.86643 5.93616 6.00403 6.14704 6.16953 6.21241 6.27622 6.28039 6.39349 6.45789 6.64782 6.68411 6.73585 6.91664 7.00460 7.19623 7.77419 7.84876 7.90489 8.10458 8.42097 8.86895 9.11287 9.65576 11.17145 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.009008 B = 0.004689 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3107.431938 B = 5969.377491 C = 8291.944862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.191 3.809 3 H 0.089 0.911 4 C -0.074 4.074 5 C -0.109 4.109 6 C -0.121 4.121 7 C -0.127 4.127 8 C -0.120 4.120 9 C -0.103 4.103 10 N -0.619 5.619 11 C 0.121 3.879 12 C -0.128 4.128 13 C -0.135 4.135 14 C -0.142 4.142 15 C -0.135 4.135 16 C 0.512 3.488 17 O -0.517 6.517 18 C -0.128 4.128 19 C 0.038 3.962 20 C -0.524 4.524 21 H 0.055 0.945 22 C 0.058 3.942 23 N -0.889 5.889 24 Si 0.890 3.110 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.284 1.284 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.122 0.878 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.064 0.936 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.023 0.977 48 H 0.020 0.980 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.480 20.356 7.161 22.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.087 3.913 3 H 0.107 0.893 4 C -0.075 4.075 5 C -0.128 4.128 6 C -0.140 4.140 7 C -0.145 4.145 8 C -0.138 4.138 9 C -0.121 4.121 10 N -0.355 5.355 11 C -0.002 4.002 12 C -0.147 4.147 13 C -0.173 4.173 14 C -0.180 4.180 15 C -0.173 4.173 16 C 0.302 3.698 17 O -0.390 6.390 18 C -0.167 4.167 19 C 0.001 3.999 20 C -0.563 4.563 21 H 0.073 0.927 22 C -0.143 4.143 23 N -0.528 5.528 24 Si 0.718 3.282 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.210 1.210 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.140 0.860 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.115 0.885 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.083 0.917 45 H 0.094 0.906 46 H 0.094 0.906 47 H 0.042 0.958 48 H 0.039 0.961 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.050 19.824 7.648 21.630 hybrid contribution 0.262 -0.591 -0.951 1.150 sum 4.312 19.234 6.697 20.817 Atomic orbital electron populations 1.22254 0.94607 1.04351 1.01303 1.19693 0.94419 0.94534 0.82637 0.89286 1.20055 0.94027 0.98542 0.94858 1.21013 0.99169 0.99578 0.93008 1.21054 0.95978 0.98712 0.98209 1.21059 0.94638 1.00379 0.98407 1.21066 0.99772 0.99320 0.93614 1.20866 0.95604 0.97968 0.97648 1.48285 1.53556 1.11481 1.22135 1.21605 0.92419 0.96218 0.89974 1.23082 0.99601 0.95729 0.96331 1.22886 0.98343 0.97087 0.98961 1.22786 0.99728 0.98188 0.97253 1.22996 1.01447 0.96313 0.96508 1.21478 0.78519 0.80248 0.89580 1.90662 1.39235 1.63511 1.45633 1.21891 1.01634 1.00596 0.92623 1.18883 0.96430 0.87557 0.97039 1.21254 1.31710 0.99064 1.04223 0.92659 1.25014 0.95182 0.97472 0.96668 1.70015 1.35325 1.12363 1.35127 0.86573 0.78325 0.79582 0.83710 1.19751 1.21036 1.21050 0.90084 0.92017 0.92435 0.86047 0.86495 0.86610 0.86514 0.86701 0.89630 0.90982 0.88545 0.91181 0.90134 0.91791 0.90334 0.90438 0.91712 0.90595 0.90579 0.95811 0.96135 0.93069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 8.19 37.16 0.30 -1.87 16 2 C 0.19 2.46 3.08 -69.08 -0.21 2.24 16 3 H 0.09 0.93 7.84 -51.93 -0.41 0.53 16 4 C -0.07 -1.07 4.13 -104.63 -0.43 -1.50 16 5 C -0.11 -1.51 9.13 -39.58 -0.36 -1.87 16 6 C -0.12 -1.59 10.05 -39.58 -0.40 -1.99 16 7 C -0.13 -1.66 10.05 -39.58 -0.40 -2.06 16 8 C -0.12 -1.66 10.05 -39.58 -0.40 -2.06 16 9 C -0.10 -1.51 8.93 -39.58 -0.35 -1.86 16 10 N -0.62 -8.75 1.68 -167.43 -0.28 -9.03 16 11 C 0.12 1.33 4.96 -4.04 -0.02 1.31 16 12 C -0.13 -1.32 3.85 -89.72 -0.35 -1.66 16 13 C -0.13 -1.20 7.64 -25.92 -0.20 -1.40 16 14 C -0.14 -1.18 8.09 -25.92 -0.21 -1.39 16 15 C -0.14 -1.18 7.64 -25.82 -0.20 -1.38 16 16 C 0.51 9.79 6.71 -10.98 -0.07 9.72 16 17 O -0.52 -11.93 13.25 5.56 0.07 -11.86 16 18 C -0.13 -2.62 4.15 -27.89 -0.12 -2.73 16 19 C 0.04 1.04 4.28 -27.88 -0.12 0.92 16 20 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 21 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 22 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 23 N -0.89 -27.67 13.29 55.43 0.74 -26.93 16 24 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 25 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 27 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 28 H 0.08 1.36 6.38 -51.93 -0.33 1.03 16 29 H 0.06 0.66 6.63 -51.93 -0.34 0.32 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.12 1.47 6.01 -52.49 -0.32 1.15 16 32 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 34 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 35 H 0.11 1.61 7.65 -52.48 -0.40 1.21 16 36 H 0.09 0.98 6.49 -51.93 -0.34 0.64 16 37 H 0.07 0.65 7.70 -51.93 -0.40 0.25 16 38 H 0.10 1.21 7.79 -51.93 -0.40 0.80 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.08 0.61 7.91 -51.93 -0.41 0.19 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.08 1.44 7.56 -51.92 -0.39 1.05 16 46 H 0.08 1.46 7.54 -51.93 -0.39 1.07 16 47 H 0.02 0.71 8.04 -51.93 -0.42 0.29 16 48 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 49 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 389.25 15.07 5.87 5.87 Total: -1.00 -33.74 389.25 -10.88 -44.63 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -8.32 Total: 1.78 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: -3.94 Total: -21.23 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.45 Total: -35.96 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.07 Total: -11.86 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.74 -10.88 -44.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291836371.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.054 kcal (2) G-P(sol) polarization free energy of solvation -33.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds