Wall clock time and date at job start Tue Mar 31 2020 11:01:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.08998 * 109.47070 * 2 1
4 4 C 1.50698 * 109.46728 * 120.00120 * 2 1 3
5 5 C 1.38233 * 120.00493 * 337.64326 * 4 2 1
6 6 C 1.38235 * 120.00389 * 179.79004 * 5 4 2
7 7 C 1.38231 * 119.99534 * 0.44521 * 6 5 4
8 8 C 1.38236 * 120.00217 * 359.80925 * 7 6 5
9 9 C 1.38231 * 120.00040 * 359.97438 * 8 7 6
10 10 N 1.46496 * 109.47068 * 240.00072 * 2 1 3
11 11 C 1.46507 * 120.00094 * 119.38025 * 10 2 1
12 12 C 1.52996 * 109.47079 * 273.42471 * 11 10 2
13 13 C 1.53776 * 113.61396 * 184.36232 * 12 11 10
14 14 C 1.53777 * 87.17947 * 220.06205 * 13 12 11
15 15 C 1.53789 * 87.07656 * 25.39112 * 14 13 12
16 16 C 1.34782 * 120.00124 * 299.37784 * 10 2 1
17 17 O 1.21276 * 119.99736 * 355.20849 * 16 10 2
18 18 C 1.50699 * 119.99999 * 175.20658 * 16 10 2
19 19 C 1.52997 * 109.47223 * 185.52438 * 18 16 10
20 20 C 1.50706 * 109.47083 * 180.02562 * 19 18 16
21 21 H 1.07995 * 120.00202 * 359.97438 * 20 19 18
22 22 C 1.37872 * 119.99519 * 180.02562 * 20 19 18
23 23 N 1.31517 * 120.00350 * 359.97438 * 22 20 19
24 24 Si 1.86800 * 119.99740 * 180.02562 * 22 20 19
25 25 H 1.48503 * 109.47331 * 359.97438 * 24 22 20
26 26 H 1.48493 * 109.47503 * 119.99658 * 24 22 20
27 27 H 1.48510 * 109.47034 * 239.99833 * 24 22 20
28 28 H 1.09005 * 109.46690 * 179.97438 * 1 2 3
29 29 H 1.08997 * 109.47374 * 300.00268 * 1 2 3
30 30 H 1.09002 * 109.46983 * 60.00027 * 1 2 3
31 31 H 1.08001 * 119.99306 * 0.02562 * 5 4 2
32 32 H 1.07998 * 120.00232 * 180.27912 * 6 5 4
33 33 H 1.08005 * 119.99803 * 179.83355 * 7 6 5
34 34 H 1.08002 * 119.99679 * 179.97438 * 8 7 6
35 35 H 1.08005 * 119.99734 * 179.97438 * 9 8 7
36 36 H 1.08999 * 109.47391 * 153.42025 * 11 10 2
37 37 H 1.09000 * 109.46595 * 33.42452 * 11 10 2
38 38 H 1.09000 * 112.90968 * 315.62127 * 12 11 10
39 39 H 1.09004 * 113.61283 * 105.46990 * 13 12 11
40 40 H 1.08996 * 113.61946 * 334.65821 * 13 12 11
41 41 H 1.08995 * 113.61925 * 139.93546 * 14 13 12
42 42 H 1.08993 * 113.61633 * 270.85042 * 14 13 12
43 43 H 1.09000 * 113.61186 * 89.11975 * 15 14 13
44 44 H 1.08999 * 113.61532 * 219.92970 * 15 14 13
45 45 H 1.09008 * 109.47501 * 305.52597 * 18 16 10
46 46 H 1.09003 * 109.47266 * 65.52277 * 18 16 10
47 47 H 1.08999 * 109.46798 * 299.99876 * 19 18 16
48 48 H 1.08994 * 109.47236 * 59.99956 * 19 18 16
49 49 H 0.97005 * 119.99711 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0323 -0.7104 1.2305
5 6 1.2189 -0.8265 2.3421
6 6 1.6780 -1.4820 3.4692
7 6 2.9539 -2.0134 3.4880
8 6 3.7693 -1.8927 2.3782
9 6 3.3086 -1.2412 1.2495
10 7 2.0184 -0.6906 -1.1961
11 6 2.8494 0.0253 -2.1674
12 6 1.9508 0.7484 -3.1726
13 6 2.7269 1.4463 -4.3019
14 6 1.7286 2.6081 -4.1669
15 6 1.5149 2.1519 -2.7139
16 6 1.7031 -1.9846 -1.4032
17 8 1.0892 -2.6017 -0.5587
18 6 2.1135 -2.6645 -2.6839
19 6 1.5192 -4.0737 -2.7263
20 6 1.9301 -4.7538 -4.0069
21 1 2.5525 -4.2329 -4.7194
22 6 1.5106 -6.0407 -4.2692
23 7 0.7522 -6.6748 -3.4018
24 14 2.0204 -6.8840 -5.8561
25 1 2.8676 -5.9633 -6.6560
26 1 2.7892 -8.1141 -5.5381
27 1 0.8093 -7.2449 -6.6361
28 1 -0.3633 -1.0277 -0.0005
29 1 -0.3634 0.5139 0.8899
30 1 -0.3633 0.5138 -0.8900
31 1 0.2232 -0.4083 2.3285
32 1 1.0408 -1.5765 4.3361
33 1 3.3137 -2.5232 4.3696
34 1 4.7664 -2.3076 2.3931
35 1 3.9458 -1.1466 0.3827
36 1 3.4860 -0.6852 -2.6945
37 1 3.4713 0.7534 -1.6465
38 1 1.1266 0.1293 -3.5269
39 1 2.6663 0.9275 -5.2587
40 1 3.7478 1.7139 -4.0296
41 1 2.1896 3.5921 -4.2522
42 1 0.8436 2.4984 -4.7935
43 1 2.2042 2.6121 -2.0059
44 1 0.4761 2.2043 -2.3881
45 1 1.7465 -2.0896 -3.5343
46 1 3.2008 -2.7271 -2.7298
47 1 1.8863 -4.6485 -1.8761
48 1 0.4320 -4.0110 -2.6805
49 1 0.4574 -7.5804 -3.5863
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000291836371.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:01:29
Heat of formation + Delta-G solvation = -17.226901 kcal
Electronic energy + Delta-G solvation = -27139.074907 eV
Core-core repulsion = 23644.552746 eV
Total energy + Delta-G solvation = -3494.522162 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-41.57577 -39.78053 -39.35418 -36.63389 -35.57476 -34.03609 -32.58857 -31.74223
-30.06159 -28.83187 -27.73916 -26.36083 -25.28605 -24.02256 -23.39969 -23.13259
-21.77594 -20.20660 -19.69975 -18.75379 -18.01967 -17.44246 -17.06522 -16.57929
-16.43302 -16.17740 -15.78496 -15.61501 -15.40646 -14.89167 -14.68252 -14.30556
-14.22164 -14.05700 -14.01941 -13.72118 -13.26990 -13.20623 -13.16806 -12.97050
-12.83857 -12.65359 -12.62222 -12.44707 -12.23157 -11.94539 -11.88259 -11.71712
-11.58384 -11.50830 -11.28262 -11.16425 -10.97015 -10.58790 -10.51838 -9.75941
-9.61654 -9.39767 -8.18700 -6.32735 0.49840 0.56125 1.40386 1.41874
1.55122 1.81457 2.10573 2.42147 2.95102 3.14276 3.66817 3.74665
3.85322 3.91560 4.00222 4.02152 4.08150 4.15963 4.26434 4.31557
4.34819 4.42285 4.48037 4.51684 4.59885 4.62400 4.73054 4.74508
4.81118 4.90985 4.96533 4.97153 5.02202 5.13430 5.16161 5.17201
5.18873 5.24365 5.31717 5.43086 5.48321 5.61130 5.62677 5.64405
5.65904 5.71257 5.83299 5.89361 6.17533 6.18128 6.52040 6.86015
7.37036 7.42610 8.94139
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.009008 B = 0.004689 C = 0.003376
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3107.431938 B = 5969.377491 C = 8291.944862
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C 0.190 3.810
3 H 0.126 0.874
4 C -0.089 4.089
5 C -0.125 4.125
6 C -0.131 4.131
7 C -0.136 4.136
8 C -0.135 4.135
9 C -0.122 4.122
10 N -0.602 5.602
11 C 0.115 3.885
12 C -0.133 4.133
13 C -0.130 4.130
14 C -0.139 4.139
15 C -0.129 4.129
16 C 0.513 3.487
17 O -0.566 6.566
18 C -0.115 4.115
19 C 0.049 3.951
20 C -0.540 4.540
21 H 0.073 0.927
22 C -0.005 4.005
23 N -0.938 5.938
24 Si 0.972 3.028
25 H -0.252 1.252
26 H -0.280 1.280
27 H -0.280 1.280
28 H 0.038 0.962
29 H 0.086 0.914
30 H 0.064 0.936
31 H 0.134 0.866
32 H 0.139 0.861
33 H 0.138 0.862
34 H 0.131 0.869
35 H 0.117 0.883
36 H 0.082 0.918
37 H 0.105 0.895
38 H 0.068 0.932
39 H 0.061 0.939
40 H 0.098 0.902
41 H 0.079 0.921
42 H 0.071 0.929
43 H 0.096 0.904
44 H 0.059 0.941
45 H 0.093 0.907
46 H 0.094 0.906
47 H -0.021 1.021
48 H -0.022 1.022
49 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.142 22.703 6.272 24.342
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C 0.088 3.912
3 H 0.143 0.857
4 C -0.090 4.090
5 C -0.143 4.143
6 C -0.148 4.148
7 C -0.154 4.154
8 C -0.153 4.153
9 C -0.141 4.141
10 N -0.335 5.335
11 C -0.007 4.007
12 C -0.153 4.153
13 C -0.168 4.168
14 C -0.177 4.177
15 C -0.166 4.166
16 C 0.302 3.698
17 O -0.444 6.444
18 C -0.155 4.155
19 C 0.011 3.989
20 C -0.578 4.578
21 H 0.091 0.909
22 C -0.203 4.203
23 N -0.578 5.578
24 Si 0.795 3.205
25 H -0.176 1.176
26 H -0.206 1.206
27 H -0.206 1.206
28 H 0.057 0.943
29 H 0.105 0.895
30 H 0.083 0.917
31 H 0.152 0.848
32 H 0.157 0.843
33 H 0.156 0.844
34 H 0.149 0.851
35 H 0.135 0.865
36 H 0.101 0.899
37 H 0.123 0.877
38 H 0.087 0.913
39 H 0.080 0.920
40 H 0.117 0.883
41 H 0.097 0.903
42 H 0.089 0.911
43 H 0.114 0.886
44 H 0.077 0.923
45 H 0.111 0.889
46 H 0.112 0.888
47 H -0.002 1.002
48 H -0.004 1.004
49 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges 5.741 22.241 6.741 23.939
hybrid contribution -0.277 -1.293 -0.618 1.460
sum 5.464 20.947 6.123 22.498
Atomic orbital electron populations
1.22185 0.94805 1.01990 1.02940 1.19921 0.94264 0.95719 0.81338
0.85677 1.20275 0.94148 0.98961 0.95569 1.21296 0.99744 0.99962
0.93284 1.21421 0.96409 0.98152 0.98867 1.21403 0.94691 1.00263
0.99057 1.21372 1.00759 0.99363 0.93798 1.21038 0.96066 0.98820
0.98145 1.48139 1.52520 1.09822 1.22987 1.21920 0.92360 0.96614
0.89780 1.23005 0.99050 0.96228 0.97026 1.22904 0.99261 0.96799
0.97810 1.22764 0.99377 0.98733 0.96808 1.23006 1.01580 0.94827
0.97182 1.21118 0.78299 0.81870 0.88466 1.90650 1.41663 1.65235
1.46859 1.21623 1.02214 0.97087 0.94579 1.18626 0.93895 0.91154
0.95235 1.21714 1.31712 0.99613 1.04749 0.90866 1.26114 0.94921
0.98438 1.00807 1.70194 1.36852 1.12910 1.37823 0.85306 0.78192
0.78365 0.78599 1.17572 1.20588 1.20568 0.94329 0.89502 0.91660
0.84832 0.84275 0.84403 0.85109 0.86538 0.89943 0.87685 0.91337
0.92047 0.88345 0.90266 0.91057 0.88554 0.92254 0.88881 0.88804
1.00223 1.00368 0.92910
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -4.12 8.19 71.98 0.59 -3.53 16
2 C 0.19 4.64 3.08 44.25 0.14 4.78 16
3 H 0.13 2.18 7.84 -2.39 -0.02 2.16 16
4 C -0.09 -2.51 4.13 -19.87 -0.08 -2.59 16
5 C -0.12 -3.38 9.13 22.27 0.20 -3.18 16
6 C -0.13 -3.33 10.05 22.27 0.22 -3.11 16
7 C -0.14 -3.48 10.05 22.27 0.22 -3.26 16
8 C -0.13 -3.70 10.05 22.27 0.22 -3.47 16
9 C -0.12 -3.56 8.93 22.27 0.20 -3.36 16
10 N -0.60 -16.53 1.68 -802.00 -1.35 -17.88 16
11 C 0.12 2.27 4.96 86.38 0.43 2.70 16
12 C -0.13 -2.49 3.85 -10.21 -0.04 -2.53 16
13 C -0.13 -1.97 7.64 31.12 0.24 -1.73 16
14 C -0.14 -1.94 8.09 31.12 0.25 -1.69 16
15 C -0.13 -1.86 7.64 31.18 0.24 -1.62 16
16 C 0.51 20.20 6.71 87.66 0.59 20.79 16
17 O -0.57 -27.68 13.25 -3.02 -0.04 -27.72 16
18 C -0.12 -4.84 4.15 29.85 0.12 -4.72 16
19 C 0.05 2.78 4.28 29.85 0.13 2.91 16
20 C -0.54 -31.37 9.11 25.60 0.23 -31.14 16
21 H 0.07 3.90 7.74 -2.91 -0.02 3.88 16
22 C -0.01 -0.32 5.46 84.65 0.46 0.14 16
23 N -0.94 -60.50 13.29 21.45 0.28 -60.22 16
24 Si 0.97 44.94 29.54 68.60 2.03 46.97 16
25 H -0.25 -10.75 7.11 99.48 0.71 -10.04 16
26 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16
27 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16
28 H 0.04 1.34 6.38 -2.38 -0.02 1.32 16
29 H 0.09 1.73 6.63 -2.39 -0.02 1.71 16
30 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16
31 H 0.13 3.13 6.01 -2.91 -0.02 3.12 16
32 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16
33 H 0.14 2.78 8.06 -2.91 -0.02 2.75 16
34 H 0.13 3.05 8.06 -2.91 -0.02 3.02 16
35 H 0.12 3.20 7.65 -2.91 -0.02 3.18 16
36 H 0.08 1.71 6.49 -2.39 -0.02 1.69 16
37 H 0.11 1.45 7.70 -2.39 -0.02 1.43 16
38 H 0.07 1.69 7.79 -2.39 -0.02 1.67 16
39 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16
40 H 0.10 1.16 8.10 -2.39 -0.02 1.14 16
41 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16
42 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16
43 H 0.10 1.07 7.91 -2.39 -0.02 1.05 16
44 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16
45 H 0.09 3.55 7.56 -2.38 -0.02 3.54 16
46 H 0.09 3.57 7.54 -2.39 -0.02 3.56 16
47 H -0.02 -1.35 8.04 -2.39 -0.02 -1.37 16
48 H -0.02 -1.43 8.14 -2.39 -0.02 -1.45 16
49 H 0.26 15.79 8.31 -92.70 -0.77 15.02 16
Total: -1.00 -78.08 389.25 6.19 -71.88
By element:
Atomic # 1 Polarization: 20.67 SS G_CDS: 0.91 Total: 21.58 kcal
Atomic # 6 Polarization: -38.98 SS G_CDS: 4.37 Total: -34.62 kcal
Atomic # 7 Polarization: -77.03 SS G_CDS: -1.07 Total: -78.10 kcal
Atomic # 8 Polarization: -27.68 SS G_CDS: -0.04 Total: -27.72 kcal
Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal
Total: -78.08 6.19 -71.88 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000291836371.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 54.657 kcal
(2) G-P(sol) polarization free energy of solvation -78.078 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.421 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.194 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.884 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.227 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds