Wall clock time and date at job start Tue Mar 31 2020 11:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47070 * 2 1 4 4 C 1.50698 * 109.46728 * 120.00120 * 2 1 3 5 5 C 1.38233 * 120.00493 * 337.64326 * 4 2 1 6 6 C 1.38235 * 120.00389 * 179.79004 * 5 4 2 7 7 C 1.38231 * 119.99534 * 0.44521 * 6 5 4 8 8 C 1.38236 * 120.00217 * 359.80925 * 7 6 5 9 9 C 1.38231 * 120.00040 * 359.97438 * 8 7 6 10 10 N 1.46496 * 109.47068 * 240.00072 * 2 1 3 11 11 C 1.46507 * 120.00094 * 119.38025 * 10 2 1 12 12 C 1.52996 * 109.47079 * 273.42471 * 11 10 2 13 13 C 1.53776 * 113.61396 * 184.36232 * 12 11 10 14 14 C 1.53777 * 87.17947 * 220.06205 * 13 12 11 15 15 C 1.53789 * 87.07656 * 25.39112 * 14 13 12 16 16 C 1.34782 * 120.00124 * 299.37784 * 10 2 1 17 17 O 1.21276 * 119.99736 * 355.20849 * 16 10 2 18 18 C 1.50699 * 119.99999 * 175.20658 * 16 10 2 19 19 C 1.52997 * 109.47223 * 185.52438 * 18 16 10 20 20 C 1.50706 * 109.47083 * 180.02562 * 19 18 16 21 21 H 1.07995 * 120.00202 * 359.97438 * 20 19 18 22 22 C 1.37872 * 119.99519 * 180.02562 * 20 19 18 23 23 N 1.31517 * 120.00350 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99740 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47331 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47503 * 119.99658 * 24 22 20 27 27 H 1.48510 * 109.47034 * 239.99833 * 24 22 20 28 28 H 1.09005 * 109.46690 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47374 * 300.00268 * 1 2 3 30 30 H 1.09002 * 109.46983 * 60.00027 * 1 2 3 31 31 H 1.08001 * 119.99306 * 0.02562 * 5 4 2 32 32 H 1.07998 * 120.00232 * 180.27912 * 6 5 4 33 33 H 1.08005 * 119.99803 * 179.83355 * 7 6 5 34 34 H 1.08002 * 119.99679 * 179.97438 * 8 7 6 35 35 H 1.08005 * 119.99734 * 179.97438 * 9 8 7 36 36 H 1.08999 * 109.47391 * 153.42025 * 11 10 2 37 37 H 1.09000 * 109.46595 * 33.42452 * 11 10 2 38 38 H 1.09000 * 112.90968 * 315.62127 * 12 11 10 39 39 H 1.09004 * 113.61283 * 105.46990 * 13 12 11 40 40 H 1.08996 * 113.61946 * 334.65821 * 13 12 11 41 41 H 1.08995 * 113.61925 * 139.93546 * 14 13 12 42 42 H 1.08993 * 113.61633 * 270.85042 * 14 13 12 43 43 H 1.09000 * 113.61186 * 89.11975 * 15 14 13 44 44 H 1.08999 * 113.61532 * 219.92970 * 15 14 13 45 45 H 1.09008 * 109.47501 * 305.52597 * 18 16 10 46 46 H 1.09003 * 109.47266 * 65.52277 * 18 16 10 47 47 H 1.08999 * 109.46798 * 299.99876 * 19 18 16 48 48 H 1.08994 * 109.47236 * 59.99956 * 19 18 16 49 49 H 0.97005 * 119.99711 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.2189 -0.8265 2.3421 6 6 1.6780 -1.4820 3.4692 7 6 2.9539 -2.0134 3.4880 8 6 3.7693 -1.8927 2.3782 9 6 3.3086 -1.2412 1.2495 10 7 2.0184 -0.6906 -1.1961 11 6 2.8494 0.0253 -2.1674 12 6 1.9508 0.7484 -3.1726 13 6 2.7269 1.4463 -4.3019 14 6 1.7286 2.6081 -4.1669 15 6 1.5149 2.1519 -2.7139 16 6 1.7031 -1.9846 -1.4032 17 8 1.0892 -2.6017 -0.5587 18 6 2.1135 -2.6645 -2.6839 19 6 1.5192 -4.0737 -2.7263 20 6 1.9301 -4.7538 -4.0069 21 1 2.5525 -4.2329 -4.7194 22 6 1.5106 -6.0407 -4.2692 23 7 0.7522 -6.6748 -3.4018 24 14 2.0204 -6.8840 -5.8561 25 1 2.8676 -5.9633 -6.6560 26 1 2.7892 -8.1141 -5.5381 27 1 0.8093 -7.2449 -6.6361 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2232 -0.4083 2.3285 32 1 1.0408 -1.5765 4.3361 33 1 3.3137 -2.5232 4.3696 34 1 4.7664 -2.3076 2.3931 35 1 3.9458 -1.1466 0.3827 36 1 3.4860 -0.6852 -2.6945 37 1 3.4713 0.7534 -1.6465 38 1 1.1266 0.1293 -3.5269 39 1 2.6663 0.9275 -5.2587 40 1 3.7478 1.7139 -4.0296 41 1 2.1896 3.5921 -4.2522 42 1 0.8436 2.4984 -4.7935 43 1 2.2042 2.6121 -2.0059 44 1 0.4761 2.2043 -2.3881 45 1 1.7465 -2.0896 -3.5343 46 1 3.2008 -2.7271 -2.7298 47 1 1.8863 -4.6485 -1.8761 48 1 0.4320 -4.0110 -2.6805 49 1 0.4574 -7.5804 -3.5863 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291836371.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:29 Heat of formation + Delta-G solvation = -17.226901 kcal Electronic energy + Delta-G solvation = -27139.074907 eV Core-core repulsion = 23644.552746 eV Total energy + Delta-G solvation = -3494.522162 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.57577 -39.78053 -39.35418 -36.63389 -35.57476 -34.03609 -32.58857 -31.74223 -30.06159 -28.83187 -27.73916 -26.36083 -25.28605 -24.02256 -23.39969 -23.13259 -21.77594 -20.20660 -19.69975 -18.75379 -18.01967 -17.44246 -17.06522 -16.57929 -16.43302 -16.17740 -15.78496 -15.61501 -15.40646 -14.89167 -14.68252 -14.30556 -14.22164 -14.05700 -14.01941 -13.72118 -13.26990 -13.20623 -13.16806 -12.97050 -12.83857 -12.65359 -12.62222 -12.44707 -12.23157 -11.94539 -11.88259 -11.71712 -11.58384 -11.50830 -11.28262 -11.16425 -10.97015 -10.58790 -10.51838 -9.75941 -9.61654 -9.39767 -8.18700 -6.32735 0.49840 0.56125 1.40386 1.41874 1.55122 1.81457 2.10573 2.42147 2.95102 3.14276 3.66817 3.74665 3.85322 3.91560 4.00222 4.02152 4.08150 4.15963 4.26434 4.31557 4.34819 4.42285 4.48037 4.51684 4.59885 4.62400 4.73054 4.74508 4.81118 4.90985 4.96533 4.97153 5.02202 5.13430 5.16161 5.17201 5.18873 5.24365 5.31717 5.43086 5.48321 5.61130 5.62677 5.64405 5.65904 5.71257 5.83299 5.89361 6.17533 6.18128 6.52040 6.86015 7.37036 7.42610 8.94139 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.009008 B = 0.004689 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3107.431938 B = 5969.377491 C = 8291.944862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.190 3.810 3 H 0.126 0.874 4 C -0.089 4.089 5 C -0.125 4.125 6 C -0.131 4.131 7 C -0.136 4.136 8 C -0.135 4.135 9 C -0.122 4.122 10 N -0.602 5.602 11 C 0.115 3.885 12 C -0.133 4.133 13 C -0.130 4.130 14 C -0.139 4.139 15 C -0.129 4.129 16 C 0.513 3.487 17 O -0.566 6.566 18 C -0.115 4.115 19 C 0.049 3.951 20 C -0.540 4.540 21 H 0.073 0.927 22 C -0.005 4.005 23 N -0.938 5.938 24 Si 0.972 3.028 25 H -0.252 1.252 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.038 0.962 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.134 0.866 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.131 0.869 35 H 0.117 0.883 36 H 0.082 0.918 37 H 0.105 0.895 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.098 0.902 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.096 0.904 44 H 0.059 0.941 45 H 0.093 0.907 46 H 0.094 0.906 47 H -0.021 1.021 48 H -0.022 1.022 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.142 22.703 6.272 24.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.088 3.912 3 H 0.143 0.857 4 C -0.090 4.090 5 C -0.143 4.143 6 C -0.148 4.148 7 C -0.154 4.154 8 C -0.153 4.153 9 C -0.141 4.141 10 N -0.335 5.335 11 C -0.007 4.007 12 C -0.153 4.153 13 C -0.168 4.168 14 C -0.177 4.177 15 C -0.166 4.166 16 C 0.302 3.698 17 O -0.444 6.444 18 C -0.155 4.155 19 C 0.011 3.989 20 C -0.578 4.578 21 H 0.091 0.909 22 C -0.203 4.203 23 N -0.578 5.578 24 Si 0.795 3.205 25 H -0.176 1.176 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.057 0.943 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.152 0.848 32 H 0.157 0.843 33 H 0.156 0.844 34 H 0.149 0.851 35 H 0.135 0.865 36 H 0.101 0.899 37 H 0.123 0.877 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.117 0.883 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.114 0.886 44 H 0.077 0.923 45 H 0.111 0.889 46 H 0.112 0.888 47 H -0.002 1.002 48 H -0.004 1.004 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.741 22.241 6.741 23.939 hybrid contribution -0.277 -1.293 -0.618 1.460 sum 5.464 20.947 6.123 22.498 Atomic orbital electron populations 1.22185 0.94805 1.01990 1.02940 1.19921 0.94264 0.95719 0.81338 0.85677 1.20275 0.94148 0.98961 0.95569 1.21296 0.99744 0.99962 0.93284 1.21421 0.96409 0.98152 0.98867 1.21403 0.94691 1.00263 0.99057 1.21372 1.00759 0.99363 0.93798 1.21038 0.96066 0.98820 0.98145 1.48139 1.52520 1.09822 1.22987 1.21920 0.92360 0.96614 0.89780 1.23005 0.99050 0.96228 0.97026 1.22904 0.99261 0.96799 0.97810 1.22764 0.99377 0.98733 0.96808 1.23006 1.01580 0.94827 0.97182 1.21118 0.78299 0.81870 0.88466 1.90650 1.41663 1.65235 1.46859 1.21623 1.02214 0.97087 0.94579 1.18626 0.93895 0.91154 0.95235 1.21714 1.31712 0.99613 1.04749 0.90866 1.26114 0.94921 0.98438 1.00807 1.70194 1.36852 1.12910 1.37823 0.85306 0.78192 0.78365 0.78599 1.17572 1.20588 1.20568 0.94329 0.89502 0.91660 0.84832 0.84275 0.84403 0.85109 0.86538 0.89943 0.87685 0.91337 0.92047 0.88345 0.90266 0.91057 0.88554 0.92254 0.88881 0.88804 1.00223 1.00368 0.92910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.12 8.19 71.98 0.59 -3.53 16 2 C 0.19 4.64 3.08 44.25 0.14 4.78 16 3 H 0.13 2.18 7.84 -2.39 -0.02 2.16 16 4 C -0.09 -2.51 4.13 -19.87 -0.08 -2.59 16 5 C -0.12 -3.38 9.13 22.27 0.20 -3.18 16 6 C -0.13 -3.33 10.05 22.27 0.22 -3.11 16 7 C -0.14 -3.48 10.05 22.27 0.22 -3.26 16 8 C -0.13 -3.70 10.05 22.27 0.22 -3.47 16 9 C -0.12 -3.56 8.93 22.27 0.20 -3.36 16 10 N -0.60 -16.53 1.68 -802.00 -1.35 -17.88 16 11 C 0.12 2.27 4.96 86.38 0.43 2.70 16 12 C -0.13 -2.49 3.85 -10.21 -0.04 -2.53 16 13 C -0.13 -1.97 7.64 31.12 0.24 -1.73 16 14 C -0.14 -1.94 8.09 31.12 0.25 -1.69 16 15 C -0.13 -1.86 7.64 31.18 0.24 -1.62 16 16 C 0.51 20.20 6.71 87.66 0.59 20.79 16 17 O -0.57 -27.68 13.25 -3.02 -0.04 -27.72 16 18 C -0.12 -4.84 4.15 29.85 0.12 -4.72 16 19 C 0.05 2.78 4.28 29.85 0.13 2.91 16 20 C -0.54 -31.37 9.11 25.60 0.23 -31.14 16 21 H 0.07 3.90 7.74 -2.91 -0.02 3.88 16 22 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 23 N -0.94 -60.50 13.29 21.45 0.28 -60.22 16 24 Si 0.97 44.94 29.54 68.60 2.03 46.97 16 25 H -0.25 -10.75 7.11 99.48 0.71 -10.04 16 26 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 27 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 28 H 0.04 1.34 6.38 -2.38 -0.02 1.32 16 29 H 0.09 1.73 6.63 -2.39 -0.02 1.71 16 30 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.13 3.13 6.01 -2.91 -0.02 3.12 16 32 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 33 H 0.14 2.78 8.06 -2.91 -0.02 2.75 16 34 H 0.13 3.05 8.06 -2.91 -0.02 3.02 16 35 H 0.12 3.20 7.65 -2.91 -0.02 3.18 16 36 H 0.08 1.71 6.49 -2.39 -0.02 1.69 16 37 H 0.11 1.45 7.70 -2.39 -0.02 1.43 16 38 H 0.07 1.69 7.79 -2.39 -0.02 1.67 16 39 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 40 H 0.10 1.16 8.10 -2.39 -0.02 1.14 16 41 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.10 1.07 7.91 -2.39 -0.02 1.05 16 44 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.09 3.55 7.56 -2.38 -0.02 3.54 16 46 H 0.09 3.57 7.54 -2.39 -0.02 3.56 16 47 H -0.02 -1.35 8.04 -2.39 -0.02 -1.37 16 48 H -0.02 -1.43 8.14 -2.39 -0.02 -1.45 16 49 H 0.26 15.79 8.31 -92.70 -0.77 15.02 16 Total: -1.00 -78.08 389.25 6.19 -71.88 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 0.91 Total: 21.58 kcal Atomic # 6 Polarization: -38.98 SS G_CDS: 4.37 Total: -34.62 kcal Atomic # 7 Polarization: -77.03 SS G_CDS: -1.07 Total: -78.10 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -0.04 Total: -27.72 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -78.08 6.19 -71.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291836371.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.657 kcal (2) G-P(sol) polarization free energy of solvation -78.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds