Wall clock time and date at job start Tue Mar 31 2020 11:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46926 * 2 1 4 4 C 1.50700 * 109.47095 * 240.00410 * 2 1 3 5 5 C 1.38241 * 119.99838 * 285.05737 * 4 2 1 6 6 C 1.38237 * 119.99820 * 179.81580 * 5 4 2 7 7 C 1.38239 * 119.99795 * 0.39362 * 6 5 4 8 8 C 1.38224 * 120.00122 * 359.85863 * 7 6 5 9 9 C 1.38235 * 120.00530 * 359.95801 * 8 7 6 10 10 N 1.46497 * 109.47338 * 120.00034 * 2 1 3 11 11 C 1.46500 * 119.99670 * 5.48816 * 10 2 1 12 12 C 1.53005 * 109.47124 * 274.14105 * 11 10 2 13 13 C 1.53781 * 113.61376 * 272.10551 * 12 11 10 14 14 C 1.53957 * 87.01630 * 220.04929 * 13 12 11 15 15 C 1.53772 * 87.11238 * 25.36586 * 14 13 12 16 16 C 1.34770 * 120.00207 * 185.48502 * 10 2 1 17 17 O 1.21282 * 119.99948 * 5.27065 * 16 10 2 18 18 C 1.50703 * 120.00022 * 185.27029 * 16 10 2 19 19 C 1.53000 * 109.47145 * 174.08662 * 18 16 10 20 20 C 1.50703 * 109.47145 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99991 * 359.97438 * 20 19 18 22 22 C 1.37872 * 119.99697 * 179.97438 * 20 19 18 23 23 N 1.31524 * 120.00019 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 120.00532 * 359.97438 * 22 20 19 25 25 H 1.48507 * 109.47145 * 89.99846 * 24 22 20 26 26 H 1.48501 * 109.47235 * 210.00058 * 24 22 20 27 27 H 1.48499 * 109.46990 * 330.00063 * 24 22 20 28 28 H 1.09002 * 109.46989 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47737 * 299.99780 * 1 2 3 30 30 H 1.09006 * 109.47033 * 60.00282 * 1 2 3 31 31 H 1.08001 * 119.99878 * 0.02562 * 5 4 2 32 32 H 1.07996 * 119.99762 * 180.23247 * 6 5 4 33 33 H 1.08004 * 119.99719 * 179.83892 * 7 6 5 34 34 H 1.08008 * 120.00143 * 179.97438 * 8 7 6 35 35 H 1.07999 * 120.00657 * 179.97438 * 9 8 7 36 36 H 1.08997 * 109.47442 * 34.14714 * 11 10 2 37 37 H 1.09006 * 109.47125 * 154.14076 * 11 10 2 38 38 H 1.08999 * 112.84789 * 43.30518 * 12 11 10 39 39 H 1.08994 * 113.61306 * 334.56852 * 13 12 11 40 40 H 1.09006 * 113.60771 * 105.47069 * 13 12 11 41 41 H 1.09006 * 113.53579 * 270.81335 * 14 13 12 42 42 H 1.08998 * 113.66502 * 139.94246 * 14 13 12 43 43 H 1.09006 * 113.61617 * 220.08684 * 15 14 13 44 44 H 1.09000 * 113.69420 * 89.20252 * 15 14 13 45 45 H 1.08999 * 109.46830 * 294.08338 * 18 16 10 46 46 H 1.08994 * 109.47111 * 54.08084 * 18 16 10 47 47 H 1.08999 * 109.46992 * 299.99577 * 19 18 16 48 48 H 1.09000 * 109.47313 * 59.99397 * 19 18 16 49 49 H 0.96991 * 120.00214 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 6 1.9695 -2.0892 -1.3067 6 6 2.4267 -2.7405 -2.4370 7 6 2.9543 -2.0135 -3.4878 8 6 3.0219 -0.6351 -3.4094 9 6 2.5612 0.0165 -2.2807 10 7 2.0183 -0.6906 1.1961 11 6 1.0718 -1.3515 2.0981 12 6 0.5336 -0.3346 3.1067 13 6 1.4012 -0.2010 4.3694 14 6 0.0866 -0.1124 5.1657 15 6 -0.5710 -0.8959 4.0176 16 6 3.3383 -0.7180 1.4667 17 8 4.1124 -0.0917 0.7743 18 6 3.8525 -1.5269 2.6297 19 6 5.3823 -1.5077 2.6276 20 6 5.8965 -2.3171 3.7902 21 1 5.2016 -2.7969 4.4634 22 6 7.2540 -2.4451 3.9942 23 7 7.7028 -3.1511 5.0091 24 14 8.4560 -1.6158 2.8294 25 1 8.7619 -0.2493 3.3239 26 1 9.7089 -2.4102 2.7629 27 1 7.8528 -1.5286 1.4752 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 1.5600 -2.6573 -0.4845 32 1 2.3742 -3.8175 -2.4980 33 1 3.3140 -2.5226 -4.3698 34 1 3.4345 -0.0671 -4.2302 35 1 2.6144 1.0935 -2.2193 36 1 0.2445 -1.7620 1.5193 37 1 1.5784 -2.1572 2.6295 38 1 0.2784 0.6212 2.6490 39 1 1.9876 -1.0922 4.5925 40 1 1.9926 0.7143 4.3978 41 1 -0.2902 0.9050 5.2721 42 1 0.1092 -0.6572 6.1095 43 1 -1.5696 -0.5410 3.7625 44 1 -0.5257 -1.9777 4.1432 45 1 3.4850 -1.0974 3.5616 46 1 3.5019 -2.5551 2.5403 47 1 5.7498 -1.9371 1.6956 48 1 5.7329 -0.4794 2.7169 49 1 8.6578 -3.2408 5.1529 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291836375.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:34 Heat of formation + Delta-G solvation = 2.550811 kcal Electronic energy + Delta-G solvation = -27254.107070 eV Core-core repulsion = 23760.442535 eV Total energy + Delta-G solvation = -3493.664536 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.46840 -38.93655 -38.24681 -35.82837 -33.52099 -32.44499 -31.03323 -30.79573 -29.36154 -28.27070 -26.20247 -25.52813 -23.85864 -22.81151 -22.49126 -21.68000 -20.24329 -19.44551 -18.53138 -17.15197 -16.90405 -16.40626 -15.85264 -15.69454 -15.35201 -15.03445 -14.53155 -14.23034 -14.04324 -13.77025 -13.41659 -13.30703 -13.03243 -12.89734 -12.68151 -12.52528 -12.40621 -12.33510 -12.17686 -11.90375 -11.76619 -11.32056 -11.25765 -11.06083 -10.94437 -10.85823 -10.66633 -10.33673 -10.25832 -10.04828 -9.92246 -9.73973 -9.19905 -9.11865 -8.83200 -8.63194 -8.48424 -8.35570 -6.00863 -3.98964 1.40301 1.49254 3.18845 3.20541 3.39579 3.45979 3.57942 3.89336 4.51465 4.53350 4.61334 4.66550 4.71836 4.83500 4.87336 4.96549 5.05648 5.14149 5.17317 5.25903 5.32476 5.35077 5.41198 5.42980 5.52621 5.56487 5.66375 5.69413 5.74422 5.76639 5.84344 5.89029 5.97638 6.04673 6.06557 6.09138 6.12631 6.23121 6.23443 6.47479 6.52417 6.56585 6.61341 6.73813 6.85811 7.07132 7.41324 7.47764 7.71345 7.83215 8.52842 8.72532 9.02313 9.62885 11.12002 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.008589 B = 0.005445 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3259.231494 B = 5140.991683 C = 7718.527883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.186 3.814 3 H 0.081 0.919 4 C -0.083 4.083 5 C -0.102 4.102 6 C -0.122 4.122 7 C -0.124 4.124 8 C -0.122 4.122 9 C -0.101 4.101 10 N -0.616 5.616 11 C 0.112 3.888 12 C -0.129 4.129 13 C -0.141 4.141 14 C -0.142 4.142 15 C -0.133 4.133 16 C 0.515 3.485 17 O -0.531 6.531 18 C -0.125 4.125 19 C 0.002 3.998 20 C -0.521 4.521 21 H 0.072 0.928 22 C 0.070 3.930 23 N -0.904 5.904 24 Si 0.875 3.125 25 H -0.277 1.277 26 H -0.289 1.289 27 H -0.262 1.262 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.083 0.917 45 H 0.091 0.909 46 H 0.080 0.920 47 H 0.020 0.980 48 H 0.019 0.981 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.435 4.819 -10.607 23.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.082 3.918 3 H 0.099 0.901 4 C -0.084 4.084 5 C -0.121 4.121 6 C -0.140 4.140 7 C -0.142 4.142 8 C -0.140 4.140 9 C -0.120 4.120 10 N -0.351 5.351 11 C -0.011 4.011 12 C -0.148 4.148 13 C -0.179 4.179 14 C -0.180 4.180 15 C -0.171 4.171 16 C 0.305 3.695 17 O -0.406 6.406 18 C -0.165 4.165 19 C -0.036 4.036 20 C -0.559 4.559 21 H 0.090 0.910 22 C -0.131 4.131 23 N -0.543 5.543 24 Si 0.702 3.298 25 H -0.203 1.203 26 H -0.215 1.215 27 H -0.186 1.186 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.135 0.865 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.101 0.899 45 H 0.109 0.891 46 H 0.099 0.901 47 H 0.038 0.962 48 H 0.037 0.963 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.831 5.100 -10.892 23.193 hybrid contribution 0.804 0.352 -0.484 1.002 sum -19.027 5.451 -11.375 22.829 Atomic orbital electron populations 1.22162 0.93437 1.02821 1.02777 1.19741 0.93862 0.95705 0.82463 0.90149 1.20118 0.98868 0.94080 0.95375 1.20899 0.99735 0.93903 0.97538 1.21102 0.99252 0.99695 0.93930 1.21097 1.00004 0.94266 0.98822 1.21070 1.00159 0.94666 0.98100 1.20940 0.97924 0.99716 0.93390 1.48221 1.06775 1.56192 1.23915 1.21714 0.93039 0.95007 0.91309 1.23091 0.97195 0.99679 0.94829 1.23151 0.96268 1.03161 0.95271 1.22817 0.97203 1.00269 0.97676 1.22880 0.97440 1.00351 0.96398 1.21451 0.80662 0.81114 0.86305 1.90647 1.55476 1.43559 1.50967 1.21821 1.00682 0.98767 0.95205 1.19362 0.89115 0.97435 0.97646 1.21098 0.92591 1.31400 1.10843 0.90990 1.24949 0.98378 0.94760 0.95039 1.69912 1.14110 1.40856 1.29447 0.86829 0.80504 0.79628 0.82807 1.20251 1.21471 1.18591 0.91623 0.91235 0.91384 0.86491 0.86305 0.86440 0.86350 0.86367 0.90444 0.89428 0.89079 0.88949 0.91477 0.90626 0.91400 0.91763 0.89872 0.89114 0.90150 0.96171 0.96270 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.03 37.16 0.30 -1.06 16 2 C 0.19 2.32 2.78 -69.08 -0.19 2.13 16 3 H 0.08 1.10 7.89 -51.93 -0.41 0.69 16 4 C -0.08 -1.14 4.04 -104.62 -0.42 -1.56 16 5 C -0.10 -1.37 9.25 -39.58 -0.37 -1.74 16 6 C -0.12 -1.54 10.05 -39.58 -0.40 -1.94 16 7 C -0.12 -1.51 10.05 -39.59 -0.40 -1.91 16 8 C -0.12 -1.52 10.05 -39.59 -0.40 -1.92 16 9 C -0.10 -1.36 9.67 -39.58 -0.38 -1.74 16 10 N -0.62 -8.54 2.05 -167.42 -0.34 -8.88 16 11 C 0.11 1.21 4.59 -4.04 -0.02 1.19 16 12 C -0.13 -1.27 3.44 -89.81 -0.31 -1.58 16 13 C -0.14 -1.65 6.45 -25.83 -0.17 -1.81 16 14 C -0.14 -1.35 8.09 -25.83 -0.21 -1.56 16 15 C -0.13 -1.11 7.64 -25.92 -0.20 -1.31 16 16 C 0.51 9.65 7.35 -10.99 -0.08 9.57 16 17 O -0.53 -12.06 15.47 5.56 0.09 -11.97 16 18 C -0.13 -2.49 4.16 -27.88 -0.12 -2.61 16 19 C 0.00 0.06 3.35 -27.88 -0.09 -0.03 16 20 C -0.52 -15.02 9.66 -34.44 -0.33 -15.35 16 21 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 22 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 23 N -0.90 -28.19 13.96 55.43 0.77 -27.41 16 24 Si 0.88 23.02 27.47 -169.99 -4.67 18.35 16 25 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 27 H -0.26 -6.91 6.54 56.52 0.37 -6.54 16 28 H 0.06 0.54 6.64 -51.93 -0.34 0.19 16 29 H 0.07 0.55 5.91 -51.93 -0.31 0.24 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.12 1.45 7.88 -52.49 -0.41 1.04 16 32 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 34 H 0.12 1.21 8.06 -52.48 -0.42 0.78 16 35 H 0.12 1.43 8.00 -52.49 -0.42 1.01 16 36 H 0.08 0.67 6.03 -51.93 -0.31 0.36 16 37 H 0.09 1.00 5.84 -51.93 -0.30 0.70 16 38 H 0.09 0.90 6.58 -51.93 -0.34 0.56 16 39 H 0.09 1.19 6.37 -51.93 -0.33 0.86 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.67 8.10 -51.93 -0.42 0.24 16 45 H 0.09 1.68 5.10 -51.93 -0.26 1.42 16 46 H 0.08 1.50 7.30 -51.93 -0.38 1.12 16 47 H 0.02 0.54 7.20 -51.93 -0.37 0.17 16 48 H 0.02 0.51 7.46 -51.93 -0.39 0.12 16 49 H 0.26 7.69 8.31 -40.82 -0.34 7.36 16 LS Contribution 381.30 15.07 5.75 5.75 Total: -1.00 -34.25 381.30 -10.26 -44.52 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -7.98 Total: 0.89 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: -3.88 Total: -21.24 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.43 Total: -36.30 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.09 Total: -11.97 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -4.67 Total: 18.35 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.25 -10.26 -44.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291836375.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.068 kcal (2) G-P(sol) polarization free energy of solvation -34.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds