Wall clock time and date at job start Tue Mar 31 2020 11:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46926 * 2 1 4 4 C 1.50700 * 109.47095 * 240.00410 * 2 1 3 5 5 C 1.38241 * 119.99838 * 285.05737 * 4 2 1 6 6 C 1.38237 * 119.99820 * 179.81580 * 5 4 2 7 7 C 1.38239 * 119.99795 * 0.39362 * 6 5 4 8 8 C 1.38224 * 120.00122 * 359.85863 * 7 6 5 9 9 C 1.38235 * 120.00530 * 359.95801 * 8 7 6 10 10 N 1.46497 * 109.47338 * 120.00034 * 2 1 3 11 11 C 1.46500 * 119.99670 * 5.48816 * 10 2 1 12 12 C 1.53005 * 109.47124 * 274.14105 * 11 10 2 13 13 C 1.53781 * 113.61376 * 272.10551 * 12 11 10 14 14 C 1.53957 * 87.01630 * 220.04929 * 13 12 11 15 15 C 1.53772 * 87.11238 * 25.36586 * 14 13 12 16 16 C 1.34770 * 120.00207 * 185.48502 * 10 2 1 17 17 O 1.21282 * 119.99948 * 5.27065 * 16 10 2 18 18 C 1.50703 * 120.00022 * 185.27029 * 16 10 2 19 19 C 1.53000 * 109.47145 * 174.08662 * 18 16 10 20 20 C 1.50703 * 109.47145 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99991 * 359.97438 * 20 19 18 22 22 C 1.37872 * 119.99697 * 179.97438 * 20 19 18 23 23 N 1.31524 * 120.00019 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 120.00532 * 359.97438 * 22 20 19 25 25 H 1.48507 * 109.47145 * 89.99846 * 24 22 20 26 26 H 1.48501 * 109.47235 * 210.00058 * 24 22 20 27 27 H 1.48499 * 109.46990 * 330.00063 * 24 22 20 28 28 H 1.09002 * 109.46989 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47737 * 299.99780 * 1 2 3 30 30 H 1.09006 * 109.47033 * 60.00282 * 1 2 3 31 31 H 1.08001 * 119.99878 * 0.02562 * 5 4 2 32 32 H 1.07996 * 119.99762 * 180.23247 * 6 5 4 33 33 H 1.08004 * 119.99719 * 179.83892 * 7 6 5 34 34 H 1.08008 * 120.00143 * 179.97438 * 8 7 6 35 35 H 1.07999 * 120.00657 * 179.97438 * 9 8 7 36 36 H 1.08997 * 109.47442 * 34.14714 * 11 10 2 37 37 H 1.09006 * 109.47125 * 154.14076 * 11 10 2 38 38 H 1.08999 * 112.84789 * 43.30518 * 12 11 10 39 39 H 1.08994 * 113.61306 * 334.56852 * 13 12 11 40 40 H 1.09006 * 113.60771 * 105.47069 * 13 12 11 41 41 H 1.09006 * 113.53579 * 270.81335 * 14 13 12 42 42 H 1.08998 * 113.66502 * 139.94246 * 14 13 12 43 43 H 1.09006 * 113.61617 * 220.08684 * 15 14 13 44 44 H 1.09000 * 113.69420 * 89.20252 * 15 14 13 45 45 H 1.08999 * 109.46830 * 294.08338 * 18 16 10 46 46 H 1.08994 * 109.47111 * 54.08084 * 18 16 10 47 47 H 1.08999 * 109.46992 * 299.99577 * 19 18 16 48 48 H 1.09000 * 109.47313 * 59.99397 * 19 18 16 49 49 H 0.96991 * 120.00214 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 6 1.9695 -2.0892 -1.3067 6 6 2.4267 -2.7405 -2.4370 7 6 2.9543 -2.0135 -3.4878 8 6 3.0219 -0.6351 -3.4094 9 6 2.5612 0.0165 -2.2807 10 7 2.0183 -0.6906 1.1961 11 6 1.0718 -1.3515 2.0981 12 6 0.5336 -0.3346 3.1067 13 6 1.4012 -0.2010 4.3694 14 6 0.0866 -0.1124 5.1657 15 6 -0.5710 -0.8959 4.0176 16 6 3.3383 -0.7180 1.4667 17 8 4.1124 -0.0917 0.7743 18 6 3.8525 -1.5269 2.6297 19 6 5.3823 -1.5077 2.6276 20 6 5.8965 -2.3171 3.7902 21 1 5.2016 -2.7969 4.4634 22 6 7.2540 -2.4451 3.9942 23 7 7.7028 -3.1511 5.0091 24 14 8.4560 -1.6158 2.8294 25 1 8.7619 -0.2493 3.3239 26 1 9.7089 -2.4102 2.7629 27 1 7.8528 -1.5286 1.4752 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 1.5600 -2.6573 -0.4845 32 1 2.3742 -3.8175 -2.4980 33 1 3.3140 -2.5226 -4.3698 34 1 3.4345 -0.0671 -4.2302 35 1 2.6144 1.0935 -2.2193 36 1 0.2445 -1.7620 1.5193 37 1 1.5784 -2.1572 2.6295 38 1 0.2784 0.6212 2.6490 39 1 1.9876 -1.0922 4.5925 40 1 1.9926 0.7143 4.3978 41 1 -0.2902 0.9050 5.2721 42 1 0.1092 -0.6572 6.1095 43 1 -1.5696 -0.5410 3.7625 44 1 -0.5257 -1.9777 4.1432 45 1 3.4850 -1.0974 3.5616 46 1 3.5019 -2.5551 2.5403 47 1 5.7498 -1.9371 1.6956 48 1 5.7329 -0.4794 2.7169 49 1 8.6578 -3.2408 5.1529 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291836375.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:33 Heat of formation + Delta-G solvation = -15.060302 kcal Electronic energy + Delta-G solvation = -27254.870745 eV Core-core repulsion = 23760.442535 eV Total energy + Delta-G solvation = -3494.428211 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.61539 -39.86803 -39.39240 -36.97648 -35.57361 -33.82725 -32.79567 -31.75831 -30.31945 -29.22630 -28.02989 -26.38466 -24.78644 -23.99804 -23.44120 -23.16516 -21.61316 -20.30970 -19.81864 -19.10466 -17.94408 -17.73845 -17.15042 -16.79582 -16.33469 -16.18761 -16.10104 -15.50599 -15.40847 -14.96357 -14.69114 -14.57241 -14.29840 -14.21796 -13.93663 -13.75327 -13.55903 -13.24983 -13.17514 -13.03830 -12.90993 -12.73263 -12.68064 -12.17614 -12.05100 -11.98156 -11.89032 -11.84475 -11.74553 -11.49698 -11.41450 -11.15209 -11.03568 -10.79934 -10.63404 -9.80764 -9.69230 -9.46402 -8.33619 -6.35679 0.43435 0.51789 1.28895 1.30787 1.46214 1.71895 2.05231 2.32127 2.91604 3.01951 3.60428 3.74856 3.78788 3.88999 3.95406 3.98400 4.07307 4.11464 4.22331 4.26870 4.30786 4.34149 4.36086 4.48491 4.49840 4.64017 4.66969 4.68417 4.83336 4.88001 4.95559 4.97884 5.01419 5.06894 5.13683 5.14614 5.16169 5.18971 5.30247 5.30647 5.41058 5.43594 5.56740 5.58013 5.59568 5.61944 5.69792 5.79670 6.13172 6.21934 6.45222 6.69650 7.29528 7.29941 8.82047 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.008589 B = 0.005445 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3259.231494 B = 5140.991683 C = 7718.527883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.183 3.817 3 H 0.065 0.935 4 C -0.097 4.097 5 C -0.118 4.118 6 C -0.132 4.132 7 C -0.132 4.132 8 C -0.130 4.130 9 C -0.122 4.122 10 N -0.599 5.599 11 C 0.105 3.895 12 C -0.121 4.121 13 C -0.158 4.158 14 C -0.139 4.139 15 C -0.117 4.117 16 C 0.516 3.484 17 O -0.578 6.578 18 C -0.118 4.118 19 C 0.009 3.991 20 C -0.524 4.524 21 H 0.051 0.949 22 C 0.019 3.981 23 N -0.941 5.941 24 Si 0.933 3.067 25 H -0.269 1.269 26 H -0.275 1.275 27 H -0.267 1.267 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.124 0.876 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.122 0.878 36 H 0.110 0.890 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.075 0.925 40 H 0.046 0.954 41 H 0.084 0.916 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.102 0.898 46 H 0.093 0.907 47 H 0.003 0.997 48 H 0.004 0.996 49 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.639 4.892 -11.796 25.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.080 3.920 3 H 0.083 0.917 4 C -0.098 4.098 5 C -0.137 4.137 6 C -0.150 4.150 7 C -0.150 4.150 8 C -0.148 4.148 9 C -0.141 4.141 10 N -0.332 5.332 11 C -0.016 4.016 12 C -0.140 4.140 13 C -0.196 4.196 14 C -0.176 4.176 15 C -0.155 4.155 16 C 0.306 3.694 17 O -0.458 6.458 18 C -0.158 4.158 19 C -0.029 4.029 20 C -0.562 4.562 21 H 0.070 0.930 22 C -0.179 4.179 23 N -0.581 5.581 24 Si 0.758 3.242 25 H -0.194 1.194 26 H -0.200 1.200 27 H -0.191 1.191 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.142 0.858 32 H 0.155 0.845 33 H 0.158 0.842 34 H 0.156 0.844 35 H 0.140 0.860 36 H 0.128 0.872 37 H 0.099 0.901 38 H 0.115 0.885 39 H 0.093 0.907 40 H 0.065 0.935 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.104 0.896 44 H 0.108 0.892 45 H 0.120 0.880 46 H 0.112 0.888 47 H 0.021 0.979 48 H 0.023 0.977 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -22.095 5.163 -12.070 25.700 hybrid contribution 1.448 0.305 -0.081 1.482 sum -20.647 5.468 -12.151 24.573 Atomic orbital electron populations 1.22133 0.90083 1.03959 1.04041 1.19909 0.96342 0.94437 0.81285 0.91720 1.20283 0.99255 0.94462 0.95773 1.21089 1.00395 0.93952 0.98223 1.21427 0.98920 1.00820 0.93857 1.21441 0.99615 0.94352 0.99587 1.21391 0.99785 0.95220 0.98411 1.21183 0.98548 1.00255 0.94069 1.48121 1.05458 1.55100 1.24488 1.22012 0.93173 0.95007 0.91443 1.23042 0.97285 0.99815 0.93855 1.23195 0.97172 1.01366 0.97838 1.22825 0.95721 1.01138 0.97957 1.22825 0.97713 1.00556 0.94430 1.21085 0.82216 0.80667 0.85447 1.90625 1.57170 1.45600 1.52385 1.21635 0.97052 1.00229 0.96847 1.19180 0.92966 0.95500 0.95213 1.21371 0.92467 1.31137 1.11271 0.93027 1.25716 1.00252 0.95472 0.96503 1.70010 1.14825 1.42264 1.31029 0.85917 0.78767 0.79118 0.80439 1.19430 1.20034 1.19129 0.90443 0.89923 0.90191 0.85784 0.84547 0.84186 0.84430 0.85960 0.87218 0.90051 0.88483 0.90682 0.93525 0.89766 0.91464 0.89566 0.89233 0.88017 0.88831 0.97869 0.97731 0.92349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 8.03 71.98 0.58 -1.53 16 2 C 0.18 4.35 2.78 44.24 0.12 4.47 16 3 H 0.06 1.75 7.89 -2.38 -0.02 1.73 16 4 C -0.10 -2.56 4.04 -19.86 -0.08 -2.64 16 5 C -0.12 -3.02 9.25 22.27 0.21 -2.82 16 6 C -0.13 -3.16 10.05 22.27 0.22 -2.94 16 7 C -0.13 -3.02 10.05 22.27 0.22 -2.80 16 8 C -0.13 -3.11 10.05 22.27 0.22 -2.89 16 9 C -0.12 -3.22 9.67 22.27 0.22 -3.00 16 10 N -0.60 -15.96 2.05 -802.00 -1.64 -17.60 16 11 C 0.11 2.03 4.59 86.38 0.40 2.42 16 12 C -0.12 -2.11 3.44 -10.27 -0.04 -2.15 16 13 C -0.16 -3.62 6.45 31.18 0.20 -3.41 16 14 C -0.14 -2.38 8.09 31.18 0.25 -2.13 16 15 C -0.12 -1.57 7.64 31.12 0.24 -1.34 16 16 C 0.52 19.45 7.35 87.66 0.64 20.09 16 17 O -0.58 -26.79 15.47 -3.04 -0.05 -26.84 16 18 C -0.12 -4.76 4.16 29.85 0.12 -4.64 16 19 C 0.01 0.49 3.35 29.85 0.10 0.59 16 20 C -0.52 -30.90 9.66 25.60 0.25 -30.65 16 21 H 0.05 3.18 7.99 -2.91 -0.02 3.15 16 22 C 0.02 1.12 5.47 84.65 0.46 1.58 16 23 N -0.94 -59.43 13.96 21.45 0.30 -59.13 16 24 Si 0.93 48.06 27.47 68.60 1.88 49.95 16 25 H -0.27 -13.45 7.11 99.48 0.71 -12.75 16 26 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 27 H -0.27 -13.88 6.54 99.48 0.65 -13.23 16 28 H 0.08 0.96 6.64 -2.39 -0.02 0.95 16 29 H 0.08 1.00 5.91 -2.39 -0.01 0.99 16 30 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.12 2.85 7.88 -2.91 -0.02 2.83 16 32 H 0.14 2.65 8.06 -2.91 -0.02 2.62 16 33 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 34 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 35 H 0.12 2.97 8.00 -2.91 -0.02 2.95 16 36 H 0.11 1.48 6.03 -2.39 -0.01 1.46 16 37 H 0.08 1.72 5.84 -2.38 -0.01 1.71 16 38 H 0.10 1.64 6.58 -2.39 -0.02 1.62 16 39 H 0.07 1.96 6.37 -2.39 -0.02 1.95 16 40 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 41 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 42 H 0.07 1.16 8.14 -2.39 -0.02 1.15 16 43 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 44 H 0.09 1.13 8.10 -2.39 -0.02 1.11 16 45 H 0.10 3.85 5.10 -2.39 -0.01 3.84 16 46 H 0.09 3.48 7.30 -2.39 -0.02 3.47 16 47 H 0.00 0.16 7.20 -2.39 -0.02 0.14 16 48 H 0.00 0.24 7.46 -2.39 -0.02 0.22 16 49 H 0.27 15.80 8.31 -92.72 -0.77 15.03 16 Total: -1.00 -75.59 381.30 5.70 -69.89 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 0.87 Total: 17.51 kcal Atomic # 6 Polarization: -38.11 SS G_CDS: 4.34 Total: -33.77 kcal Atomic # 7 Polarization: -75.39 SS G_CDS: -1.34 Total: -76.73 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.05 Total: -26.84 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 1.88 Total: 49.95 kcal Total: -75.59 5.70 -69.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291836375.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.830 kcal (2) G-P(sol) polarization free energy of solvation -75.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds