Wall clock time and date at job start Tue Mar 31 2020 11:12:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.30993 * 1
3 3 C 1.50700 * 120.00310 * 2 1
4 4 N 1.46493 * 109.47552 * 124.99526 * 3 2 1
5 5 C 1.46499 * 120.00105 * 264.13529 * 4 3 2
6 6 C 1.50697 * 109.47079 * 275.38528 * 5 4 3
7 7 H 1.08001 * 120.00209 * 0.02562 * 6 5 4
8 8 C 1.37884 * 120.00496 * 179.97438 * 6 5 4
9 9 N 1.31514 * 119.99498 * 0.02562 * 8 6 5
10 10 Si 1.86797 * 120.00344 * 180.02562 * 8 6 5
11 11 H 1.48501 * 109.47105 * 0.02562 * 10 8 6
12 12 H 1.48495 * 109.47233 * 120.00157 * 10 8 6
13 13 H 1.48503 * 109.47274 * 240.00099 * 10 8 6
14 14 C 1.34778 * 119.99925 * 84.13099 * 4 3 2
15 15 O 1.21283 * 120.00027 * 4.33747 * 14 4 3
16 16 C 1.50702 * 119.99867 * 184.33428 * 14 4 3
17 17 H 1.08997 * 109.47409 * 314.37134 * 16 14 4
18 18 C 1.53001 * 109.47027 * 74.37201 * 16 14 4
19 19 C 1.53000 * 109.47187 * 194.36830 * 16 14 4
20 20 C 1.53000 * 109.47178 * 175.00379 * 19 16 14
21 21 C 1.52997 * 109.46947 * 180.02562 * 20 19 16
22 22 C 1.50700 * 109.47170 * 179.97438 * 21 20 19
23 23 C 1.38237 * 120.00111 * 89.99528 * 22 21 20
24 24 C 1.38240 * 119.99793 * 179.97438 * 23 22 21
25 25 C 1.38229 * 120.00309 * 0.06732 * 24 23 22
26 26 C 1.38239 * 119.99854 * 359.91297 * 25 24 23
27 27 C 1.38228 * 119.99973 * 0.04382 * 26 25 24
28 28 H 1.08005 * 120.00216 * 0.02562 * 1 2 3
29 29 H 1.08002 * 120.00190 * 179.97438 * 1 2 3
30 30 H 1.08005 * 120.00216 * 179.97438 * 2 1 3
31 31 H 1.09001 * 109.46832 * 4.99259 * 3 2 1
32 32 H 1.09001 * 109.47075 * 244.99837 * 3 2 1
33 33 H 1.09003 * 109.47286 * 35.38448 * 5 4 3
34 34 H 1.09001 * 109.47735 * 155.38752 * 5 4 3
35 35 H 0.96995 * 119.99946 * 180.02562 * 9 8 6
36 36 H 1.09001 * 109.47337 * 306.91505 * 18 16 14
37 37 H 1.09002 * 109.47487 * 66.91649 * 18 16 14
38 38 H 1.09001 * 109.47477 * 186.91704 * 18 16 14
39 39 H 1.08996 * 109.46996 * 55.00333 * 19 16 14
40 40 H 1.09001 * 109.47207 * 295.00305 * 19 16 14
41 41 H 1.08996 * 109.47195 * 60.00075 * 20 19 16
42 42 H 1.09001 * 109.46991 * 300.00058 * 20 19 16
43 43 H 1.09001 * 109.47781 * 59.99837 * 21 20 19
44 44 H 1.09001 * 109.47083 * 299.99708 * 21 20 19
45 45 H 1.07998 * 119.99542 * 359.70379 * 23 22 21
46 46 H 1.08001 * 119.99485 * 179.97438 * 24 23 22
47 47 H 1.08003 * 120.00243 * 179.97438 * 25 24 23
48 48 H 1.08005 * 119.99815 * 180.02562 * 26 25 24
49 49 H 1.08000 * 120.00018 * 180.02562 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3099 0.0000 0.0000
3 6 2.0635 1.3051 0.0000
4 7 2.9937 1.3319 1.1314
5 6 2.6031 1.9806 2.3855
6 6 2.8838 3.4585 2.2953
7 1 3.3101 3.8732 1.3938
8 6 2.5954 4.2815 3.3633
9 7 2.0759 3.7767 4.4610
10 14 2.9427 6.1135 3.2512
11 1 3.5226 6.4269 1.9205
12 1 1.6769 6.8691 3.4294
13 1 3.9044 6.5011 4.3144
14 6 4.2088 0.7598 1.0186
15 8 4.5627 0.2923 -0.0431
16 6 5.1277 0.7011 2.2115
17 1 5.1419 1.6717 2.7073
18 6 4.6267 -0.3637 3.1893
19 6 6.5417 0.3439 1.7491
20 6 7.4991 0.4061 2.9409
21 6 8.9131 0.0494 2.4783
22 6 9.8563 0.1113 3.6520
23 6 10.0740 -1.0146 4.4239
24 6 10.9396 -0.9579 5.5003
25 6 11.5863 0.2250 5.8056
26 6 11.3689 1.3509 5.0334
27 6 10.5041 1.2939 3.9566
28 1 -0.5401 0.9353 -0.0004
29 1 -0.5400 -0.9353 -0.0004
30 1 1.8500 -0.9353 0.0004
31 1 1.3586 2.1316 0.0894
32 1 2.6213 1.4025 -0.9314
33 1 1.5387 1.8229 2.5601
34 1 3.1738 1.5521 3.2095
35 1 1.8727 4.3557 5.2122
36 1 3.5785 -0.1775 3.4237
37 1 4.7279 -1.3498 2.7360
38 1 5.2165 -0.3225 4.1050
39 1 6.8644 1.0525 0.9864
40 1 6.5442 -0.6637 1.3332
41 1 7.1763 -0.3026 3.7036
42 1 7.4965 1.4137 3.3568
43 1 9.2357 0.7584 1.7157
44 1 8.9160 -0.9580 2.0622
45 1 9.5645 -1.9373 4.1886
46 1 11.1094 -1.8375 6.1035
47 1 12.2623 0.2694 6.6468
48 1 11.8745 2.2750 5.2718
49 1 10.3345 2.1734 3.3531
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000292532068.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:12:19
Heat of formation + Delta-G solvation = -19.866599 kcal
Electronic energy + Delta-G solvation = -25891.745210 eV
Core-core repulsion = 22397.108582 eV
Total energy + Delta-G solvation = -3494.636627 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-39.53499 -39.24077 -36.04347 -35.23510 -33.66701 -32.86157 -32.06811 -30.95745
-29.68655 -27.48396 -26.13188 -25.80265 -23.64186 -22.71137 -22.63924 -21.14708
-20.50217 -19.58047 -17.94578 -16.83295 -16.65762 -16.20781 -15.60216 -15.53540
-15.20240 -14.75042 -14.46613 -14.42026 -14.25720 -13.54605 -13.47462 -13.31380
-13.05408 -12.78551 -12.66991 -12.24266 -12.08248 -11.89224 -11.74401 -11.64224
-11.37179 -11.28967 -11.15502 -11.00869 -10.88769 -10.79170 -10.69327 -10.61386
-10.38902 -10.22294 -10.14957 -9.69985 -9.16315 -8.99658 -8.83908 -8.70162
-8.52576 -7.70674 -6.18916 -4.26074 1.29315 1.32525 2.58097 3.20739
3.29510 3.33230 3.46055 3.71007 4.06975 4.33651 4.72505 4.76867
4.91419 5.03826 5.13666 5.14740 5.18946 5.22039 5.37746 5.44242
5.45916 5.57103 5.59313 5.63437 5.70511 5.86006 5.89178 5.94426
6.00485 6.02298 6.13865 6.16485 6.23898 6.31471 6.35877 6.37353
6.39825 6.41860 6.43106 6.60705 6.70150 6.72749 6.81610 6.93922
6.94470 7.07968 7.22729 7.58041 7.76104 8.06089 8.38579 8.79600
9.05584 9.41992 10.87705
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.010677 B = 0.003355 C = 0.002751
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2621.854503 B = 8343.244459 C =10175.463149
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.153 4.153
3 C 0.144 3.856
4 N -0.592 5.592
5 C 0.231 3.769
6 C -0.538 4.538
7 H 0.061 0.939
8 C 0.066 3.934
9 N -0.890 5.890
10 Si 0.895 3.105
11 H -0.272 1.272
12 H -0.283 1.283
13 H -0.282 1.282
14 C 0.521 3.479
15 O -0.576 6.576
16 C -0.109 4.109
17 H 0.107 0.893
18 C -0.140 4.140
19 C -0.095 4.095
20 C -0.114 4.114
21 C -0.082 4.082
22 C -0.074 4.074
23 C -0.119 4.119
24 C -0.120 4.120
25 C -0.131 4.131
26 C -0.119 4.119
27 C -0.118 4.118
28 H 0.097 0.903
29 H 0.092 0.908
30 H 0.103 0.897
31 H 0.084 0.916
32 H 0.076 0.924
33 H 0.032 0.968
34 H 0.050 0.950
35 H 0.264 0.736
36 H 0.067 0.933
37 H 0.051 0.949
38 H 0.062 0.938
39 H 0.064 0.936
40 H 0.065 0.935
41 H 0.065 0.935
42 H 0.065 0.935
43 H 0.072 0.928
44 H 0.071 0.929
45 H 0.121 0.879
46 H 0.119 0.881
47 H 0.118 0.882
48 H 0.119 0.881
49 H 0.122 0.878
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.681 -8.219 0.637 14.297
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.233 4.233
2 C -0.172 4.172
3 C 0.020 3.980
4 N -0.321 5.321
5 C 0.112 3.888
6 C -0.577 4.577
7 H 0.079 0.921
8 C -0.137 4.137
9 N -0.529 5.529
10 Si 0.722 3.278
11 H -0.197 1.197
12 H -0.209 1.209
13 H -0.208 1.208
14 C 0.309 3.691
15 O -0.458 6.458
16 C -0.130 4.130
17 H 0.125 0.875
18 C -0.197 4.197
19 C -0.133 4.133
20 C -0.151 4.151
21 C -0.120 4.120
22 C -0.074 4.074
23 C -0.137 4.137
24 C -0.138 4.138
25 C -0.149 4.149
26 C -0.137 4.137
27 C -0.136 4.136
28 H 0.115 0.885
29 H 0.110 0.890
30 H 0.121 0.879
31 H 0.102 0.898
32 H 0.095 0.905
33 H 0.050 0.950
34 H 0.068 0.932
35 H 0.074 0.926
36 H 0.086 0.914
37 H 0.070 0.930
38 H 0.081 0.919
39 H 0.082 0.918
40 H 0.084 0.916
41 H 0.084 0.916
42 H 0.084 0.916
43 H 0.090 0.910
44 H 0.090 0.910
45 H 0.139 0.861
46 H 0.137 0.863
47 H 0.136 0.864
48 H 0.137 0.863
49 H 0.140 0.860
Dipole moment (debyes) X Y Z Total
from point charges 11.775 -8.381 0.288 14.456
hybrid contribution -0.010 1.161 0.250 1.188
sum 11.765 -7.220 0.538 13.815
Atomic orbital electron populations
1.23758 0.95778 1.01490 1.02228 1.23399 0.96041 0.99403 0.98405
1.20377 0.92276 0.94633 0.90666 1.48217 1.13829 1.54341 1.15731
1.19588 0.96896 0.92280 0.80070 1.21554 1.42767 0.92506 1.00873
0.92093 1.24929 0.94746 0.98973 0.95094 1.69930 1.42778 1.35743
1.04411 0.86489 0.78100 0.84935 0.78268 1.19664 1.20858 1.20790
1.20539 0.82060 0.77048 0.89414 1.90568 1.75603 1.49665 1.29941
1.21242 0.94093 1.02384 0.95307 0.87506 1.21801 1.02236 0.97356
0.98351 1.21369 0.92557 1.02309 0.97031 1.21634 0.92787 1.02319
0.98394 1.20664 0.93833 1.02615 0.94847 1.20018 0.96856 0.93442
0.97097 1.21080 0.98688 0.98305 0.95650 1.21129 0.97298 0.97910
0.97489 1.21111 1.00519 0.93322 0.99932 1.21148 0.98598 0.98371
0.95595 1.21116 0.97024 0.97638 0.97815 0.88468 0.88973 0.87902
0.89797 0.90542 0.94962 0.93237 0.92593 0.91449 0.93028 0.91867
0.91755 0.91632 0.91583 0.91577 0.90954 0.91017 0.86127 0.86314
0.86424 0.86258 0.86013
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -2.87 14.32 29.02 0.42 -2.45 16
2 C -0.15 -2.59 9.79 -36.02 -0.35 -2.94 16
3 C 0.14 2.74 5.85 -5.20 -0.03 2.71 16
4 N -0.59 -12.54 2.46 -176.44 -0.43 -12.98 16
5 C 0.23 5.45 4.55 -5.20 -0.02 5.42 16
6 C -0.54 -13.95 9.38 -34.44 -0.32 -14.27 16
7 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16
8 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16
9 N -0.89 -24.28 13.29 55.43 0.74 -23.55 16
10 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16
11 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16
12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16
13 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16
14 C 0.52 10.80 6.83 -10.98 -0.08 10.73 16
15 O -0.58 -12.92 15.73 5.56 0.09 -12.83 16
16 C -0.11 -1.95 1.86 -91.77 -0.17 -2.12 16
17 H 0.11 2.10 7.26 -51.93 -0.38 1.73 16
18 C -0.14 -2.24 8.34 37.16 0.31 -1.93 16
19 C -0.09 -1.45 4.00 -26.73 -0.11 -1.56 16
20 C -0.11 -1.47 4.95 -26.73 -0.13 -1.61 16
21 C -0.08 -0.93 5.34 -27.88 -0.15 -1.08 16
22 C -0.07 -0.85 5.13 -104.62 -0.54 -1.39 16
23 C -0.12 -1.28 9.70 -39.58 -0.38 -1.67 16
24 C -0.12 -1.20 10.05 -39.58 -0.40 -1.59 16
25 C -0.13 -1.29 10.05 -39.58 -0.40 -1.68 16
26 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16
27 C -0.12 -1.33 9.70 -39.59 -0.38 -1.71 16
28 H 0.10 1.39 7.84 -52.48 -0.41 0.98 16
29 H 0.09 1.17 8.06 -52.49 -0.42 0.75 16
30 H 0.10 1.77 8.06 -52.48 -0.42 1.34 16
31 H 0.08 1.59 7.68 -51.93 -0.40 1.19 16
32 H 0.08 1.47 7.55 -51.93 -0.39 1.08 16
33 H 0.03 0.81 8.11 -51.93 -0.42 0.39 16
34 H 0.05 1.18 4.58 -51.93 -0.24 0.94 16
35 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16
36 H 0.07 1.18 6.30 -51.93 -0.33 0.85 16
37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16
38 H 0.06 0.90 6.92 -51.93 -0.36 0.54 16
39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16
40 H 0.06 1.00 8.09 -51.93 -0.42 0.58 16
41 H 0.07 0.83 6.72 -51.93 -0.35 0.48 16
42 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16
43 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16
44 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16
45 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16
46 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16
47 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16
48 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16
49 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16
LS Contribution 401.86 15.07 6.06 6.06
Total: -1.00 -28.91 401.86 -10.12 -39.03
By element:
Atomic # 1 Polarization: 14.28 SS G_CDS: -8.31 Total: 5.97 kcal
Atomic # 6 Polarization: -13.91 SS G_CDS: -3.23 Total: -17.14 kcal
Atomic # 7 Polarization: -36.83 SS G_CDS: 0.30 Total: -36.53 kcal
Atomic # 8 Polarization: -12.92 SS G_CDS: 0.09 Total: -12.83 kcal
Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal
Total LS contribution 6.06 Total: 6.06 kcal
Total: -28.91 -10.12 -39.03 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000292532068.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.162 kcal
(2) G-P(sol) polarization free energy of solvation -28.913 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.751 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.116 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.028 kcal
(6) G-S(sol) free energy of system = (1) + (5) -19.867 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds