Wall clock time and date at job start Tue Mar 31 2020 11:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50700 * 120.00310 * 2 1 4 4 N 1.46493 * 109.47552 * 124.99526 * 3 2 1 5 5 C 1.46499 * 120.00105 * 264.13529 * 4 3 2 6 6 C 1.50697 * 109.47079 * 275.38528 * 5 4 3 7 7 H 1.08001 * 120.00209 * 0.02562 * 6 5 4 8 8 C 1.37884 * 120.00496 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99498 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00344 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47105 * 0.02562 * 10 8 6 12 12 H 1.48495 * 109.47233 * 120.00157 * 10 8 6 13 13 H 1.48503 * 109.47274 * 240.00099 * 10 8 6 14 14 C 1.34778 * 119.99925 * 84.13099 * 4 3 2 15 15 O 1.21283 * 120.00027 * 4.33747 * 14 4 3 16 16 C 1.50702 * 119.99867 * 184.33428 * 14 4 3 17 17 H 1.08997 * 109.47409 * 314.37134 * 16 14 4 18 18 C 1.53001 * 109.47027 * 74.37201 * 16 14 4 19 19 C 1.53000 * 109.47187 * 194.36830 * 16 14 4 20 20 C 1.53000 * 109.47178 * 175.00379 * 19 16 14 21 21 C 1.52997 * 109.46947 * 180.02562 * 20 19 16 22 22 C 1.50700 * 109.47170 * 179.97438 * 21 20 19 23 23 C 1.38237 * 120.00111 * 89.99528 * 22 21 20 24 24 C 1.38240 * 119.99793 * 179.97438 * 23 22 21 25 25 C 1.38229 * 120.00309 * 0.06732 * 24 23 22 26 26 C 1.38239 * 119.99854 * 359.91297 * 25 24 23 27 27 C 1.38228 * 119.99973 * 0.04382 * 26 25 24 28 28 H 1.08005 * 120.00216 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.00190 * 179.97438 * 1 2 3 30 30 H 1.08005 * 120.00216 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.46832 * 4.99259 * 3 2 1 32 32 H 1.09001 * 109.47075 * 244.99837 * 3 2 1 33 33 H 1.09003 * 109.47286 * 35.38448 * 5 4 3 34 34 H 1.09001 * 109.47735 * 155.38752 * 5 4 3 35 35 H 0.96995 * 119.99946 * 180.02562 * 9 8 6 36 36 H 1.09001 * 109.47337 * 306.91505 * 18 16 14 37 37 H 1.09002 * 109.47487 * 66.91649 * 18 16 14 38 38 H 1.09001 * 109.47477 * 186.91704 * 18 16 14 39 39 H 1.08996 * 109.46996 * 55.00333 * 19 16 14 40 40 H 1.09001 * 109.47207 * 295.00305 * 19 16 14 41 41 H 1.08996 * 109.47195 * 60.00075 * 20 19 16 42 42 H 1.09001 * 109.46991 * 300.00058 * 20 19 16 43 43 H 1.09001 * 109.47781 * 59.99837 * 21 20 19 44 44 H 1.09001 * 109.47083 * 299.99708 * 21 20 19 45 45 H 1.07998 * 119.99542 * 359.70379 * 23 22 21 46 46 H 1.08001 * 119.99485 * 179.97438 * 24 23 22 47 47 H 1.08003 * 120.00243 * 179.97438 * 25 24 23 48 48 H 1.08005 * 119.99815 * 180.02562 * 26 25 24 49 49 H 1.08000 * 120.00018 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.6031 1.9806 2.3855 6 6 2.8838 3.4585 2.2953 7 1 3.3101 3.8732 1.3938 8 6 2.5954 4.2815 3.3633 9 7 2.0759 3.7767 4.4610 10 14 2.9427 6.1135 3.2512 11 1 3.5226 6.4269 1.9205 12 1 1.6769 6.8691 3.4294 13 1 3.9044 6.5011 4.3144 14 6 4.2088 0.7598 1.0186 15 8 4.5627 0.2923 -0.0431 16 6 5.1277 0.7011 2.2115 17 1 5.1419 1.6717 2.7073 18 6 4.6267 -0.3637 3.1893 19 6 6.5417 0.3439 1.7491 20 6 7.4991 0.4061 2.9409 21 6 8.9131 0.0494 2.4783 22 6 9.8563 0.1113 3.6520 23 6 10.0740 -1.0146 4.4239 24 6 10.9396 -0.9579 5.5003 25 6 11.5863 0.2250 5.8056 26 6 11.3689 1.3509 5.0334 27 6 10.5041 1.2939 3.9566 28 1 -0.5401 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3586 2.1316 0.0894 32 1 2.6213 1.4025 -0.9314 33 1 1.5387 1.8229 2.5601 34 1 3.1738 1.5521 3.2095 35 1 1.8727 4.3557 5.2122 36 1 3.5785 -0.1775 3.4237 37 1 4.7279 -1.3498 2.7360 38 1 5.2165 -0.3225 4.1050 39 1 6.8644 1.0525 0.9864 40 1 6.5442 -0.6637 1.3332 41 1 7.1763 -0.3026 3.7036 42 1 7.4965 1.4137 3.3568 43 1 9.2357 0.7584 1.7157 44 1 8.9160 -0.9580 2.0622 45 1 9.5645 -1.9373 4.1886 46 1 11.1094 -1.8375 6.1035 47 1 12.2623 0.2694 6.6468 48 1 11.8745 2.2750 5.2718 49 1 10.3345 2.1734 3.3531 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292532068.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:19 Heat of formation + Delta-G solvation = -19.866599 kcal Electronic energy + Delta-G solvation = -25891.745210 eV Core-core repulsion = 22397.108582 eV Total energy + Delta-G solvation = -3494.636627 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.53499 -39.24077 -36.04347 -35.23510 -33.66701 -32.86157 -32.06811 -30.95745 -29.68655 -27.48396 -26.13188 -25.80265 -23.64186 -22.71137 -22.63924 -21.14708 -20.50217 -19.58047 -17.94578 -16.83295 -16.65762 -16.20781 -15.60216 -15.53540 -15.20240 -14.75042 -14.46613 -14.42026 -14.25720 -13.54605 -13.47462 -13.31380 -13.05408 -12.78551 -12.66991 -12.24266 -12.08248 -11.89224 -11.74401 -11.64224 -11.37179 -11.28967 -11.15502 -11.00869 -10.88769 -10.79170 -10.69327 -10.61386 -10.38902 -10.22294 -10.14957 -9.69985 -9.16315 -8.99658 -8.83908 -8.70162 -8.52576 -7.70674 -6.18916 -4.26074 1.29315 1.32525 2.58097 3.20739 3.29510 3.33230 3.46055 3.71007 4.06975 4.33651 4.72505 4.76867 4.91419 5.03826 5.13666 5.14740 5.18946 5.22039 5.37746 5.44242 5.45916 5.57103 5.59313 5.63437 5.70511 5.86006 5.89178 5.94426 6.00485 6.02298 6.13865 6.16485 6.23898 6.31471 6.35877 6.37353 6.39825 6.41860 6.43106 6.60705 6.70150 6.72749 6.81610 6.93922 6.94470 7.07968 7.22729 7.58041 7.76104 8.06089 8.38579 8.79600 9.05584 9.41992 10.87705 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.010677 B = 0.003355 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.854503 B = 8343.244459 C =10175.463149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.153 4.153 3 C 0.144 3.856 4 N -0.592 5.592 5 C 0.231 3.769 6 C -0.538 4.538 7 H 0.061 0.939 8 C 0.066 3.934 9 N -0.890 5.890 10 Si 0.895 3.105 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.521 3.479 15 O -0.576 6.576 16 C -0.109 4.109 17 H 0.107 0.893 18 C -0.140 4.140 19 C -0.095 4.095 20 C -0.114 4.114 21 C -0.082 4.082 22 C -0.074 4.074 23 C -0.119 4.119 24 C -0.120 4.120 25 C -0.131 4.131 26 C -0.119 4.119 27 C -0.118 4.118 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.032 0.968 34 H 0.050 0.950 35 H 0.264 0.736 36 H 0.067 0.933 37 H 0.051 0.949 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.121 0.879 46 H 0.119 0.881 47 H 0.118 0.882 48 H 0.119 0.881 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.681 -8.219 0.637 14.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.172 4.172 3 C 0.020 3.980 4 N -0.321 5.321 5 C 0.112 3.888 6 C -0.577 4.577 7 H 0.079 0.921 8 C -0.137 4.137 9 N -0.529 5.529 10 Si 0.722 3.278 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.208 1.208 14 C 0.309 3.691 15 O -0.458 6.458 16 C -0.130 4.130 17 H 0.125 0.875 18 C -0.197 4.197 19 C -0.133 4.133 20 C -0.151 4.151 21 C -0.120 4.120 22 C -0.074 4.074 23 C -0.137 4.137 24 C -0.138 4.138 25 C -0.149 4.149 26 C -0.137 4.137 27 C -0.136 4.136 28 H 0.115 0.885 29 H 0.110 0.890 30 H 0.121 0.879 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.050 0.950 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.139 0.861 46 H 0.137 0.863 47 H 0.136 0.864 48 H 0.137 0.863 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 11.775 -8.381 0.288 14.456 hybrid contribution -0.010 1.161 0.250 1.188 sum 11.765 -7.220 0.538 13.815 Atomic orbital electron populations 1.23758 0.95778 1.01490 1.02228 1.23399 0.96041 0.99403 0.98405 1.20377 0.92276 0.94633 0.90666 1.48217 1.13829 1.54341 1.15731 1.19588 0.96896 0.92280 0.80070 1.21554 1.42767 0.92506 1.00873 0.92093 1.24929 0.94746 0.98973 0.95094 1.69930 1.42778 1.35743 1.04411 0.86489 0.78100 0.84935 0.78268 1.19664 1.20858 1.20790 1.20539 0.82060 0.77048 0.89414 1.90568 1.75603 1.49665 1.29941 1.21242 0.94093 1.02384 0.95307 0.87506 1.21801 1.02236 0.97356 0.98351 1.21369 0.92557 1.02309 0.97031 1.21634 0.92787 1.02319 0.98394 1.20664 0.93833 1.02615 0.94847 1.20018 0.96856 0.93442 0.97097 1.21080 0.98688 0.98305 0.95650 1.21129 0.97298 0.97910 0.97489 1.21111 1.00519 0.93322 0.99932 1.21148 0.98598 0.98371 0.95595 1.21116 0.97024 0.97638 0.97815 0.88468 0.88973 0.87902 0.89797 0.90542 0.94962 0.93237 0.92593 0.91449 0.93028 0.91867 0.91755 0.91632 0.91583 0.91577 0.90954 0.91017 0.86127 0.86314 0.86424 0.86258 0.86013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.87 14.32 29.02 0.42 -2.45 16 2 C -0.15 -2.59 9.79 -36.02 -0.35 -2.94 16 3 C 0.14 2.74 5.85 -5.20 -0.03 2.71 16 4 N -0.59 -12.54 2.46 -176.44 -0.43 -12.98 16 5 C 0.23 5.45 4.55 -5.20 -0.02 5.42 16 6 C -0.54 -13.95 9.38 -34.44 -0.32 -14.27 16 7 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 8 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 9 N -0.89 -24.28 13.29 55.43 0.74 -23.55 16 10 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 11 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 14 C 0.52 10.80 6.83 -10.98 -0.08 10.73 16 15 O -0.58 -12.92 15.73 5.56 0.09 -12.83 16 16 C -0.11 -1.95 1.86 -91.77 -0.17 -2.12 16 17 H 0.11 2.10 7.26 -51.93 -0.38 1.73 16 18 C -0.14 -2.24 8.34 37.16 0.31 -1.93 16 19 C -0.09 -1.45 4.00 -26.73 -0.11 -1.56 16 20 C -0.11 -1.47 4.95 -26.73 -0.13 -1.61 16 21 C -0.08 -0.93 5.34 -27.88 -0.15 -1.08 16 22 C -0.07 -0.85 5.13 -104.62 -0.54 -1.39 16 23 C -0.12 -1.28 9.70 -39.58 -0.38 -1.67 16 24 C -0.12 -1.20 10.05 -39.58 -0.40 -1.59 16 25 C -0.13 -1.29 10.05 -39.58 -0.40 -1.68 16 26 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 27 C -0.12 -1.33 9.70 -39.59 -0.38 -1.71 16 28 H 0.10 1.39 7.84 -52.48 -0.41 0.98 16 29 H 0.09 1.17 8.06 -52.49 -0.42 0.75 16 30 H 0.10 1.77 8.06 -52.48 -0.42 1.34 16 31 H 0.08 1.59 7.68 -51.93 -0.40 1.19 16 32 H 0.08 1.47 7.55 -51.93 -0.39 1.08 16 33 H 0.03 0.81 8.11 -51.93 -0.42 0.39 16 34 H 0.05 1.18 4.58 -51.93 -0.24 0.94 16 35 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 36 H 0.07 1.18 6.30 -51.93 -0.33 0.85 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.90 6.92 -51.93 -0.36 0.54 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.06 1.00 8.09 -51.93 -0.42 0.58 16 41 H 0.07 0.83 6.72 -51.93 -0.35 0.48 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 44 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 45 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 46 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 47 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 48 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 49 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 401.86 15.07 6.06 6.06 Total: -1.00 -28.91 401.86 -10.12 -39.03 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -8.31 Total: 5.97 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: -3.23 Total: -17.14 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: 0.30 Total: -36.53 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.09 Total: -12.83 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -28.91 -10.12 -39.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292532068.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.162 kcal (2) G-P(sol) polarization free energy of solvation -28.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds