Wall clock time and date at job start Tue Mar 31 2020 11:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50700 * 120.00310 * 2 1 4 4 N 1.46493 * 109.47552 * 124.99526 * 3 2 1 5 5 C 1.46499 * 120.00105 * 264.13529 * 4 3 2 6 6 C 1.50697 * 109.47079 * 275.38528 * 5 4 3 7 7 H 1.08001 * 120.00209 * 0.02562 * 6 5 4 8 8 C 1.37884 * 120.00496 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99498 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00344 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47105 * 0.02562 * 10 8 6 12 12 H 1.48495 * 109.47233 * 120.00157 * 10 8 6 13 13 H 1.48503 * 109.47274 * 240.00099 * 10 8 6 14 14 C 1.34778 * 119.99925 * 84.13099 * 4 3 2 15 15 O 1.21283 * 120.00027 * 4.33747 * 14 4 3 16 16 C 1.50702 * 119.99867 * 184.33428 * 14 4 3 17 17 H 1.08997 * 109.47409 * 314.37134 * 16 14 4 18 18 C 1.53001 * 109.47027 * 74.37201 * 16 14 4 19 19 C 1.53000 * 109.47187 * 194.36830 * 16 14 4 20 20 C 1.53000 * 109.47178 * 175.00379 * 19 16 14 21 21 C 1.52997 * 109.46947 * 180.02562 * 20 19 16 22 22 C 1.50700 * 109.47170 * 179.97438 * 21 20 19 23 23 C 1.38237 * 120.00111 * 89.99528 * 22 21 20 24 24 C 1.38240 * 119.99793 * 179.97438 * 23 22 21 25 25 C 1.38229 * 120.00309 * 0.06732 * 24 23 22 26 26 C 1.38239 * 119.99854 * 359.91297 * 25 24 23 27 27 C 1.38228 * 119.99973 * 0.04382 * 26 25 24 28 28 H 1.08005 * 120.00216 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.00190 * 179.97438 * 1 2 3 30 30 H 1.08005 * 120.00216 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.46832 * 4.99259 * 3 2 1 32 32 H 1.09001 * 109.47075 * 244.99837 * 3 2 1 33 33 H 1.09003 * 109.47286 * 35.38448 * 5 4 3 34 34 H 1.09001 * 109.47735 * 155.38752 * 5 4 3 35 35 H 0.96995 * 119.99946 * 180.02562 * 9 8 6 36 36 H 1.09001 * 109.47337 * 306.91505 * 18 16 14 37 37 H 1.09002 * 109.47487 * 66.91649 * 18 16 14 38 38 H 1.09001 * 109.47477 * 186.91704 * 18 16 14 39 39 H 1.08996 * 109.46996 * 55.00333 * 19 16 14 40 40 H 1.09001 * 109.47207 * 295.00305 * 19 16 14 41 41 H 1.08996 * 109.47195 * 60.00075 * 20 19 16 42 42 H 1.09001 * 109.46991 * 300.00058 * 20 19 16 43 43 H 1.09001 * 109.47781 * 59.99837 * 21 20 19 44 44 H 1.09001 * 109.47083 * 299.99708 * 21 20 19 45 45 H 1.07998 * 119.99542 * 359.70379 * 23 22 21 46 46 H 1.08001 * 119.99485 * 179.97438 * 24 23 22 47 47 H 1.08003 * 120.00243 * 179.97438 * 25 24 23 48 48 H 1.08005 * 119.99815 * 180.02562 * 26 25 24 49 49 H 1.08000 * 120.00018 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.6031 1.9806 2.3855 6 6 2.8838 3.4585 2.2953 7 1 3.3101 3.8732 1.3938 8 6 2.5954 4.2815 3.3633 9 7 2.0759 3.7767 4.4610 10 14 2.9427 6.1135 3.2512 11 1 3.5226 6.4269 1.9205 12 1 1.6769 6.8691 3.4294 13 1 3.9044 6.5011 4.3144 14 6 4.2088 0.7598 1.0186 15 8 4.5627 0.2923 -0.0431 16 6 5.1277 0.7011 2.2115 17 1 5.1419 1.6717 2.7073 18 6 4.6267 -0.3637 3.1893 19 6 6.5417 0.3439 1.7491 20 6 7.4991 0.4061 2.9409 21 6 8.9131 0.0494 2.4783 22 6 9.8563 0.1113 3.6520 23 6 10.0740 -1.0146 4.4239 24 6 10.9396 -0.9579 5.5003 25 6 11.5863 0.2250 5.8056 26 6 11.3689 1.3509 5.0334 27 6 10.5041 1.2939 3.9566 28 1 -0.5401 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3586 2.1316 0.0894 32 1 2.6213 1.4025 -0.9314 33 1 1.5387 1.8229 2.5601 34 1 3.1738 1.5521 3.2095 35 1 1.8727 4.3557 5.2122 36 1 3.5785 -0.1775 3.4237 37 1 4.7279 -1.3498 2.7360 38 1 5.2165 -0.3225 4.1050 39 1 6.8644 1.0525 0.9864 40 1 6.5442 -0.6637 1.3332 41 1 7.1763 -0.3026 3.7036 42 1 7.4965 1.4137 3.3568 43 1 9.2357 0.7584 1.7157 44 1 8.9160 -0.9580 2.0622 45 1 9.5645 -1.9373 4.1886 46 1 11.1094 -1.8375 6.1035 47 1 12.2623 0.2694 6.6468 48 1 11.8745 2.2750 5.2718 49 1 10.3345 2.1734 3.3531 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292532068.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:16 Heat of formation + Delta-G solvation = -31.031464 kcal Electronic energy + Delta-G solvation = -25892.229355 eV Core-core repulsion = 22397.108582 eV Total energy + Delta-G solvation = -3495.120772 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.06951 -40.12933 -37.39779 -36.78282 -35.20430 -34.29411 -33.60462 -31.71878 -30.73111 -29.36276 -27.33110 -27.24833 -25.20921 -24.24746 -23.40840 -22.25043 -21.55642 -20.92714 -19.55414 -18.62757 -17.85742 -17.60783 -17.21835 -16.57965 -16.28999 -16.13188 -16.00723 -15.80511 -15.52878 -14.62520 -14.56291 -14.43227 -14.19619 -14.15414 -13.94911 -13.85342 -13.46645 -13.24387 -13.05344 -12.99255 -12.82454 -12.72278 -12.58187 -12.44647 -12.26396 -12.19312 -12.06488 -11.79620 -11.72020 -11.63115 -11.54615 -11.38251 -10.71496 -10.57234 -10.23184 -9.77607 -9.53192 -9.46812 -8.20908 -6.35303 0.50090 0.54509 1.27706 1.38797 1.42259 1.52443 1.79241 2.36704 2.52706 2.92561 3.09205 3.64087 3.85191 3.93608 3.98457 4.07160 4.11045 4.19833 4.22017 4.32850 4.35310 4.43402 4.51955 4.60323 4.65666 4.69952 4.72955 4.78726 4.84114 4.89375 4.92295 4.95952 5.00744 5.02998 5.11802 5.16328 5.21802 5.25429 5.30310 5.43332 5.50062 5.62745 5.63482 5.65512 5.66795 5.74311 5.80512 5.93723 6.06480 6.18434 6.59034 6.81800 7.30536 7.42037 8.84648 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.010677 B = 0.003355 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.854503 B = 8343.244459 C =10175.463149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.178 4.178 3 C 0.141 3.859 4 N -0.597 5.597 5 C 0.248 3.752 6 C -0.550 4.550 7 H 0.048 0.952 8 C 0.025 3.975 9 N -0.916 5.916 10 Si 0.954 3.046 11 H -0.273 1.273 12 H -0.277 1.277 13 H -0.276 1.276 14 C 0.515 3.485 15 O -0.595 6.595 16 C -0.107 4.107 17 H 0.085 0.915 18 C -0.132 4.132 19 C -0.085 4.085 20 C -0.104 4.104 21 C -0.076 4.076 22 C -0.090 4.090 23 C -0.130 4.130 24 C -0.126 4.126 25 C -0.136 4.136 26 C -0.129 4.129 27 C -0.136 4.136 28 H 0.102 0.898 29 H 0.120 0.880 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.014 0.986 34 H 0.047 0.953 35 H 0.268 0.732 36 H 0.049 0.951 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.050 0.950 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.054 0.946 43 H 0.071 0.929 44 H 0.081 0.919 45 H 0.133 0.867 46 H 0.141 0.859 47 H 0.140 0.860 48 H 0.135 0.865 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.236 -8.742 1.395 15.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.197 4.197 3 C 0.019 3.981 4 N -0.326 5.326 5 C 0.128 3.872 6 C -0.589 4.589 7 H 0.067 0.933 8 C -0.175 4.175 9 N -0.555 5.555 10 Si 0.779 3.221 11 H -0.198 1.198 12 H -0.202 1.202 13 H -0.201 1.201 14 C 0.304 3.696 15 O -0.478 6.478 16 C -0.128 4.128 17 H 0.103 0.897 18 C -0.190 4.190 19 C -0.123 4.123 20 C -0.141 4.141 21 C -0.113 4.113 22 C -0.090 4.090 23 C -0.148 4.148 24 C -0.144 4.144 25 C -0.154 4.154 26 C -0.147 4.147 27 C -0.154 4.154 28 H 0.121 0.879 29 H 0.138 0.862 30 H 0.117 0.883 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.032 0.968 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.069 0.931 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.073 0.927 43 H 0.089 0.911 44 H 0.099 0.901 45 H 0.151 0.849 46 H 0.158 0.842 47 H 0.158 0.842 48 H 0.153 0.847 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 12.324 -8.908 1.036 15.242 hybrid contribution -0.228 1.311 -0.003 1.331 sum 12.096 -7.597 1.033 14.321 Atomic orbital electron populations 1.24018 0.94933 1.03049 0.98410 1.23174 0.96747 0.97929 1.01891 1.20446 0.92037 0.96047 0.89598 1.48250 1.14575 1.54202 1.15539 1.19235 0.95547 0.91387 0.81065 1.21717 1.42819 0.93831 1.00523 0.93328 1.25592 0.94463 1.02750 0.94730 1.70005 1.43390 1.37171 1.04945 0.85573 0.78104 0.80291 0.78125 1.19796 1.20240 1.20149 1.21053 0.82079 0.76422 0.90012 1.90546 1.75888 1.50503 1.30836 1.21265 0.95053 1.02034 0.94420 0.89655 1.21749 1.01276 0.97241 0.98713 1.21293 0.91438 1.01912 0.97657 1.21524 0.93329 1.01922 0.97341 1.20580 0.92663 1.03085 0.94993 1.20081 0.97413 0.94006 0.97463 1.21317 0.99067 0.98539 0.95870 1.21459 0.96754 0.98841 0.97375 1.21457 1.00551 0.93052 1.00336 1.21427 0.98470 0.99450 0.95363 1.21301 0.97728 0.97835 0.98547 0.87940 0.86220 0.88273 0.90196 0.91327 0.96768 0.93470 0.92271 0.93231 0.91641 0.89930 0.93087 0.91284 0.90841 0.92686 0.91071 0.90059 0.84945 0.84158 0.84222 0.84681 0.85896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.62 14.32 67.79 0.97 -3.65 16 2 C -0.18 -5.98 9.79 25.65 0.25 -5.73 16 3 C 0.14 5.52 5.85 85.63 0.50 6.02 16 4 N -0.60 -25.94 2.46 -830.51 -2.04 -27.98 16 5 C 0.25 11.98 4.55 85.63 0.39 12.37 16 6 C -0.55 -29.00 9.38 25.60 0.24 -28.76 16 7 H 0.05 2.63 7.81 -2.91 -0.02 2.61 16 8 C 0.03 1.33 5.46 84.66 0.46 1.79 16 9 N -0.92 -50.06 13.29 21.45 0.28 -49.78 16 10 Si 0.95 41.91 29.54 68.60 2.03 43.94 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 12 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 13 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 14 C 0.51 21.79 6.83 87.66 0.60 22.39 16 15 O -0.59 -27.09 15.73 -3.04 -0.05 -27.13 16 16 C -0.11 -3.86 1.86 -11.54 -0.02 -3.88 16 17 H 0.09 3.47 7.26 -2.39 -0.02 3.45 16 18 C -0.13 -4.17 8.34 71.98 0.60 -3.57 16 19 C -0.09 -2.60 4.00 30.59 0.12 -2.48 16 20 C -0.10 -2.63 4.95 30.59 0.15 -2.48 16 21 C -0.08 -1.66 5.34 29.85 0.16 -1.50 16 22 C -0.09 -1.98 5.13 -19.86 -0.10 -2.09 16 23 C -0.13 -2.60 9.70 22.27 0.22 -2.38 16 24 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 25 C -0.14 -2.41 10.05 22.27 0.22 -2.18 16 26 C -0.13 -2.51 10.05 22.27 0.22 -2.28 16 27 C -0.14 -2.99 9.70 22.27 0.22 -2.77 16 28 H 0.10 2.75 7.84 -2.91 -0.02 2.73 16 29 H 0.12 2.69 8.06 -2.91 -0.02 2.66 16 30 H 0.10 3.40 8.06 -2.91 -0.02 3.37 16 31 H 0.08 3.10 7.68 -2.39 -0.02 3.09 16 32 H 0.07 2.73 7.55 -2.39 -0.02 2.71 16 33 H 0.01 0.73 8.11 -2.39 -0.02 0.71 16 34 H 0.05 2.30 4.58 -2.39 -0.01 2.29 16 35 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 36 H 0.05 1.73 6.30 -2.39 -0.02 1.72 16 37 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.08 2.26 6.92 -2.39 -0.02 2.24 16 39 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.07 2.07 8.09 -2.39 -0.02 2.05 16 41 H 0.07 1.75 6.72 -2.39 -0.02 1.74 16 42 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.07 1.55 8.08 -2.39 -0.02 1.53 16 44 H 0.08 1.61 8.09 -2.39 -0.02 1.59 16 45 H 0.13 2.23 8.06 -2.91 -0.02 2.20 16 46 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 47 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 48 H 0.14 2.07 8.06 -2.91 -0.02 2.04 16 49 H 0.12 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -61.42 401.86 6.54 -54.88 By element: Atomic # 1 Polarization: 28.42 SS G_CDS: 0.89 Total: 29.31 kcal Atomic # 6 Polarization: -28.66 SS G_CDS: 5.43 Total: -23.24 kcal Atomic # 7 Polarization: -76.00 SS G_CDS: -1.76 Total: -77.76 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.05 Total: -27.13 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -61.42 6.54 -54.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292532068.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.844 kcal (2) G-P(sol) polarization free energy of solvation -61.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds