Wall clock time and date at job start Tue Mar 31 2020 10:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47302 * 2 1 4 4 N 1.46495 * 109.47348 * 120.00646 * 2 1 3 5 5 C 1.34782 * 120.00137 * 274.99854 * 4 2 1 6 6 O 1.21286 * 119.99628 * 0.02562 * 5 4 2 7 7 C 1.50700 * 120.00253 * 179.97438 * 5 4 2 8 8 C 1.52997 * 109.46707 * 180.02562 * 7 5 4 9 9 C 1.50702 * 109.47045 * 180.02562 * 8 7 5 10 10 H 1.08008 * 119.99821 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00311 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00046 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99939 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47019 * 59.99779 * 13 11 9 15 15 H 1.48502 * 109.46935 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47038 * 299.99535 * 13 11 9 17 17 C 1.52998 * 109.47186 * 240.00527 * 2 1 3 18 18 C 1.50703 * 110.01992 * 173.75986 * 17 2 1 19 19 C 1.38238 * 119.99699 * 355.85160 * 18 17 2 20 20 C 1.38235 * 119.99603 * 179.76631 * 19 18 17 21 21 C 1.38236 * 120.00385 * 0.50343 * 20 19 18 22 22 C 1.38240 * 119.99637 * 359.75222 * 21 20 19 23 23 C 1.38230 * 120.00179 * 176.12370 * 18 17 2 24 24 C 1.53875 * 110.03520 * 295.15104 * 17 2 1 25 25 C 1.54269 * 106.64228 * 119.25736 * 24 17 2 26 26 C 1.54962 * 104.15697 * 336.45134 * 25 24 17 27 27 C 1.54263 * 110.03579 * 52.31801 * 17 2 1 28 28 H 1.09003 * 109.47065 * 174.53433 * 1 2 3 29 29 H 1.08995 * 109.47233 * 294.52940 * 1 2 3 30 30 H 1.09001 * 109.47268 * 54.53488 * 1 2 3 31 31 H 0.96998 * 120.00719 * 95.00108 * 4 2 1 32 32 H 1.08998 * 109.47019 * 300.00047 * 7 5 4 33 33 H 1.08995 * 109.47033 * 60.00551 * 7 5 4 34 34 H 1.09005 * 109.47676 * 299.99630 * 8 7 5 35 35 H 1.08996 * 109.47580 * 60.00273 * 8 7 5 36 36 H 0.96998 * 120.00060 * 179.97438 * 12 11 9 37 37 H 1.07997 * 119.99947 * 0.02562 * 19 18 17 38 38 H 1.07999 * 119.99397 * 180.23504 * 20 19 18 39 39 H 1.07994 * 120.00102 * 179.72547 * 21 20 19 40 40 H 1.07998 * 119.99528 * 179.97438 * 22 21 20 41 41 H 1.08001 * 120.00664 * 0.02562 * 23 18 17 42 42 H 1.09000 * 110.03732 * 238.57199 * 24 17 2 43 43 H 1.09000 * 110.02924 * 359.95316 * 24 17 2 44 44 H 1.09001 * 110.48222 * 95.09556 * 25 24 17 45 45 H 1.08994 * 110.48795 * 217.73707 * 25 24 17 46 46 H 1.09003 * 110.71811 * 279.56849 * 26 25 24 47 47 H 1.09004 * 110.76233 * 156.22172 * 26 25 24 48 48 H 1.09007 * 110.48192 * 23.00553 * 27 17 2 49 49 H 1.08997 * 110.48982 * 145.51270 * 27 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1960 5 6 2.1471 -0.0185 2.3571 6 8 1.8582 1.1582 2.4118 7 6 2.6489 -0.7291 3.5876 8 6 2.6999 0.2538 4.7590 9 6 3.2023 -0.4566 5.9894 10 1 3.4592 -1.5046 5.9408 11 6 3.3332 0.2309 7.1774 12 7 3.0200 1.5068 7.2367 13 14 3.9553 -0.6500 8.7027 14 1 5.3169 -1.1838 8.4452 15 1 4.0049 0.3040 9.8396 16 1 3.0391 -1.7703 9.0356 17 6 2.0399 -0.7211 -1.2493 18 6 3.5390 -0.5964 -1.3411 19 6 4.2267 0.1687 -0.4178 20 6 5.6023 0.2792 -0.4992 21 6 6.2890 -0.3670 -1.5100 22 6 5.6007 -1.1279 -2.4364 23 6 4.2257 -1.2426 -2.3519 24 6 1.6364 -2.2053 -1.2029 25 6 0.7454 -2.4596 -2.4364 26 6 0.1795 -1.0611 -2.7900 27 6 1.3809 -0.1245 -2.5100 28 1 -0.3633 -1.0230 -0.0979 29 1 -0.3633 0.4266 0.9349 30 1 -0.3634 0.5963 -0.8370 31 1 2.2491 -1.6318 1.1525 32 1 1.9760 -1.5509 3.8324 33 1 3.6480 -1.1216 3.3985 34 1 3.3726 1.0760 4.5145 35 1 1.7007 0.6460 4.9481 36 1 3.1117 1.9904 8.0725 37 1 3.6898 0.6768 0.3695 38 1 6.1399 0.8739 0.2244 39 1 7.3632 -0.2771 -1.5762 40 1 6.1372 -1.6324 -3.2264 41 1 3.6880 -1.8365 -3.0762 42 1 2.5247 -2.8354 -1.2476 43 1 1.0779 -2.4120 -0.2900 44 1 1.3399 -2.8504 -3.2623 45 1 -0.0627 -3.1475 -2.1879 46 1 -0.6632 -0.8118 -2.1451 47 1 -0.1095 -1.0154 -3.8400 48 1 1.0357 0.8911 -2.3157 49 1 2.0790 -0.1355 -3.3470 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293262348.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:48 Heat of formation + Delta-G solvation = -35.005695 kcal Electronic energy + Delta-G solvation = -27092.165560 eV Core-core repulsion = 23596.872452 eV Total energy + Delta-G solvation = -3495.293108 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -41.02267 -38.82359 -37.94353 -34.56691 -33.41042 -31.85126 -31.23254 -30.81641 -30.11376 -28.83559 -27.30016 -25.69904 -23.68374 -22.27836 -22.08907 -21.39195 -20.86292 -19.44929 -18.82116 -17.38585 -16.79340 -16.36624 -15.67736 -15.47489 -15.16762 -14.85314 -14.66072 -14.41474 -14.24148 -13.84398 -13.72473 -13.37843 -13.10012 -12.83745 -12.60172 -12.27034 -12.12542 -11.96506 -11.90909 -11.68640 -11.36291 -11.26493 -11.21862 -11.19046 -11.12298 -10.89377 -10.76193 -10.63858 -10.60492 -10.31716 -9.92135 -9.63052 -9.14531 -8.96680 -8.94408 -8.73186 -8.63087 -8.29458 -5.93894 -3.98144 1.32156 1.40111 3.30314 3.35730 3.40173 3.41751 3.55830 3.75690 4.25857 4.38145 4.47521 4.50687 4.77248 4.89568 4.95754 5.01001 5.12319 5.16560 5.25457 5.27264 5.40910 5.41824 5.45835 5.47876 5.54649 5.56935 5.63541 5.68800 5.72317 5.77831 5.83346 5.87551 5.97083 6.03572 6.07987 6.10592 6.17474 6.26397 6.29798 6.33276 6.46011 6.55805 6.63660 6.84478 6.93579 6.99778 7.76486 7.89389 7.95656 8.09784 8.41611 8.83912 9.10436 9.65193 11.16984 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015471 B = 0.003362 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.379984 B = 8327.286319 C = 9345.372635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.153 3.847 3 H 0.088 0.912 4 N -0.737 5.737 5 C 0.510 3.490 6 O -0.535 6.535 7 C -0.131 4.131 8 C 0.039 3.961 9 C -0.527 4.527 10 H 0.055 0.945 11 C 0.058 3.942 12 N -0.890 5.890 13 Si 0.892 3.108 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 C -0.027 4.027 18 C -0.069 4.069 19 C -0.110 4.110 20 C -0.116 4.116 21 C -0.125 4.125 22 C -0.125 4.125 23 C -0.117 4.117 24 C -0.119 4.119 25 C -0.121 4.121 26 C -0.130 4.130 27 C -0.108 4.108 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.396 0.604 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.023 0.977 35 H 0.023 0.977 36 H 0.261 0.739 37 H 0.131 0.869 38 H 0.122 0.878 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.076 0.924 47 H 0.064 0.936 48 H 0.071 0.929 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.199 -7.988 -24.746 26.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.048 3.952 3 H 0.106 0.894 4 N -0.391 5.391 5 C 0.299 3.701 6 O -0.411 6.411 7 C -0.171 4.171 8 C 0.001 3.999 9 C -0.565 4.565 10 H 0.073 0.927 11 C -0.143 4.143 12 N -0.529 5.529 13 Si 0.720 3.280 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.203 1.203 17 C -0.028 4.028 18 C -0.069 4.069 19 C -0.128 4.128 20 C -0.134 4.134 21 C -0.143 4.143 22 C -0.143 4.143 23 C -0.135 4.135 24 C -0.157 4.157 25 C -0.159 4.159 26 C -0.168 4.168 27 C -0.146 4.146 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.230 0.770 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.071 0.929 37 H 0.148 0.852 38 H 0.140 0.860 39 H 0.136 0.864 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.094 0.906 47 H 0.083 0.917 48 H 0.090 0.910 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.415 -6.954 -24.554 25.559 hybrid contribution 0.589 -0.917 0.898 1.413 sum -0.825 -7.871 -23.656 24.945 Atomic orbital electron populations 1.22351 0.95469 1.01956 1.02504 1.20841 0.93824 0.97180 0.83367 0.89425 1.46374 1.69137 1.13985 1.09627 1.21519 0.76433 0.87632 0.84525 1.90670 1.49112 1.16388 1.84913 1.21864 1.00851 1.01020 0.93370 1.18873 0.98271 0.93287 0.89445 1.21197 1.44406 0.96291 0.94653 0.92725 1.25015 0.95568 0.94836 0.98901 1.69987 1.48146 1.08137 1.26586 0.86668 0.79366 0.79379 0.82607 1.20266 1.21293 1.20262 1.20427 0.91006 0.95988 0.95381 1.19738 0.94310 0.97436 0.95406 1.21421 0.94384 0.98264 0.98731 1.21244 0.94565 0.99415 0.98169 1.21141 0.99738 0.97993 0.95456 1.21064 0.94326 0.99615 0.99265 1.20895 0.94097 1.00177 0.98305 1.22384 0.99925 0.94277 0.99070 1.22346 0.98797 0.97199 0.97527 1.22701 0.98032 0.94829 1.01198 1.22470 0.96964 0.99263 0.95871 0.92235 0.91896 0.91730 0.76964 0.90407 0.90389 0.95883 0.95887 0.92929 0.85159 0.86042 0.86435 0.86491 0.86404 0.91202 0.90830 0.91805 0.91638 0.90584 0.91710 0.91029 0.91039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 7.74 37.15 0.29 -1.61 16 2 C 0.15 1.89 0.99 -67.94 -0.07 1.82 16 3 H 0.09 1.30 6.37 -51.93 -0.33 0.97 16 4 N -0.74 -10.23 3.57 -53.81 -0.19 -10.42 16 5 C 0.51 9.65 7.07 -10.98 -0.08 9.57 16 6 O -0.54 -12.33 15.65 5.55 0.09 -12.24 16 7 C -0.13 -2.68 5.64 -27.88 -0.16 -2.84 16 8 C 0.04 1.05 4.26 -27.88 -0.12 0.93 16 9 C -0.53 -15.08 9.11 -34.44 -0.31 -15.39 16 10 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 11 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -27.59 13.29 55.43 0.74 -26.85 16 13 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 C -0.03 -0.27 0.47 -154.54 -0.07 -0.34 16 18 C -0.07 -0.76 4.59 -104.62 -0.48 -1.24 16 19 C -0.11 -1.45 8.56 -39.58 -0.34 -1.79 16 20 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 21 C -0.13 -1.34 10.05 -39.58 -0.40 -1.74 16 22 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 23 C -0.12 -1.15 8.02 -39.58 -0.32 -1.47 16 24 C -0.12 -1.00 4.47 -25.61 -0.11 -1.12 16 25 C -0.12 -0.85 6.84 -25.03 -0.17 -1.02 16 26 C -0.13 -0.93 6.29 -24.70 -0.16 -1.08 16 27 C -0.11 -0.91 5.27 -25.08 -0.13 -1.04 16 28 H 0.06 0.60 6.07 -51.93 -0.32 0.29 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.64 5.94 -51.93 -0.31 0.33 16 31 H 0.40 4.70 7.16 -40.82 -0.29 4.40 16 32 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 33 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 35 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 36 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 37 H 0.13 2.00 4.81 -52.49 -0.25 1.74 16 38 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 39 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 40 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.12 0.96 7.91 -52.49 -0.42 0.54 16 42 H 0.07 0.60 7.13 -51.93 -0.37 0.22 16 43 H 0.07 0.65 5.79 -51.93 -0.30 0.35 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.08 0.56 5.70 -51.93 -0.30 0.26 16 47 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 48 H 0.07 0.63 7.07 -51.92 -0.37 0.26 16 49 H 0.07 0.59 7.23 -51.93 -0.38 0.21 16 LS Contribution 374.73 15.07 5.65 5.65 Total: -1.00 -33.09 374.73 -10.07 -43.16 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -7.81 Total: 4.11 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: -3.52 Total: -20.21 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.54 Total: -37.27 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.09 Total: -12.24 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.09 -10.07 -43.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293262348.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.158 kcal (2) G-P(sol) polarization free energy of solvation -33.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds