Wall clock time and date at job start Tue Mar 31 2020 10:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47302 * 2 1 4 4 N 1.46495 * 109.47348 * 120.00646 * 2 1 3 5 5 C 1.34782 * 120.00137 * 274.99854 * 4 2 1 6 6 O 1.21286 * 119.99628 * 0.02562 * 5 4 2 7 7 C 1.50700 * 120.00253 * 179.97438 * 5 4 2 8 8 C 1.52997 * 109.46707 * 180.02562 * 7 5 4 9 9 C 1.50702 * 109.47045 * 180.02562 * 8 7 5 10 10 H 1.08008 * 119.99821 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00311 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00046 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99939 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47019 * 59.99779 * 13 11 9 15 15 H 1.48502 * 109.46935 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47038 * 299.99535 * 13 11 9 17 17 C 1.52998 * 109.47186 * 240.00527 * 2 1 3 18 18 C 1.50703 * 110.01992 * 173.75986 * 17 2 1 19 19 C 1.38238 * 119.99699 * 355.85160 * 18 17 2 20 20 C 1.38235 * 119.99603 * 179.76631 * 19 18 17 21 21 C 1.38236 * 120.00385 * 0.50343 * 20 19 18 22 22 C 1.38240 * 119.99637 * 359.75222 * 21 20 19 23 23 C 1.38230 * 120.00179 * 176.12370 * 18 17 2 24 24 C 1.53875 * 110.03520 * 295.15104 * 17 2 1 25 25 C 1.54269 * 106.64228 * 119.25736 * 24 17 2 26 26 C 1.54962 * 104.15697 * 336.45134 * 25 24 17 27 27 C 1.54263 * 110.03579 * 52.31801 * 17 2 1 28 28 H 1.09003 * 109.47065 * 174.53433 * 1 2 3 29 29 H 1.08995 * 109.47233 * 294.52940 * 1 2 3 30 30 H 1.09001 * 109.47268 * 54.53488 * 1 2 3 31 31 H 0.96998 * 120.00719 * 95.00108 * 4 2 1 32 32 H 1.08998 * 109.47019 * 300.00047 * 7 5 4 33 33 H 1.08995 * 109.47033 * 60.00551 * 7 5 4 34 34 H 1.09005 * 109.47676 * 299.99630 * 8 7 5 35 35 H 1.08996 * 109.47580 * 60.00273 * 8 7 5 36 36 H 0.96998 * 120.00060 * 179.97438 * 12 11 9 37 37 H 1.07997 * 119.99947 * 0.02562 * 19 18 17 38 38 H 1.07999 * 119.99397 * 180.23504 * 20 19 18 39 39 H 1.07994 * 120.00102 * 179.72547 * 21 20 19 40 40 H 1.07998 * 119.99528 * 179.97438 * 22 21 20 41 41 H 1.08001 * 120.00664 * 0.02562 * 23 18 17 42 42 H 1.09000 * 110.03732 * 238.57199 * 24 17 2 43 43 H 1.09000 * 110.02924 * 359.95316 * 24 17 2 44 44 H 1.09001 * 110.48222 * 95.09556 * 25 24 17 45 45 H 1.08994 * 110.48795 * 217.73707 * 25 24 17 46 46 H 1.09003 * 110.71811 * 279.56849 * 26 25 24 47 47 H 1.09004 * 110.76233 * 156.22172 * 26 25 24 48 48 H 1.09007 * 110.48192 * 23.00553 * 27 17 2 49 49 H 1.08997 * 110.48982 * 145.51270 * 27 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1960 5 6 2.1471 -0.0185 2.3571 6 8 1.8582 1.1582 2.4118 7 6 2.6489 -0.7291 3.5876 8 6 2.6999 0.2538 4.7590 9 6 3.2023 -0.4566 5.9894 10 1 3.4592 -1.5046 5.9408 11 6 3.3332 0.2309 7.1774 12 7 3.0200 1.5068 7.2367 13 14 3.9553 -0.6500 8.7027 14 1 5.3169 -1.1838 8.4452 15 1 4.0049 0.3040 9.8396 16 1 3.0391 -1.7703 9.0356 17 6 2.0399 -0.7211 -1.2493 18 6 3.5390 -0.5964 -1.3411 19 6 4.2267 0.1687 -0.4178 20 6 5.6023 0.2792 -0.4992 21 6 6.2890 -0.3670 -1.5100 22 6 5.6007 -1.1279 -2.4364 23 6 4.2257 -1.2426 -2.3519 24 6 1.6364 -2.2053 -1.2029 25 6 0.7454 -2.4596 -2.4364 26 6 0.1795 -1.0611 -2.7900 27 6 1.3809 -0.1245 -2.5100 28 1 -0.3633 -1.0230 -0.0979 29 1 -0.3633 0.4266 0.9349 30 1 -0.3634 0.5963 -0.8370 31 1 2.2491 -1.6318 1.1525 32 1 1.9760 -1.5509 3.8324 33 1 3.6480 -1.1216 3.3985 34 1 3.3726 1.0760 4.5145 35 1 1.7007 0.6460 4.9481 36 1 3.1117 1.9904 8.0725 37 1 3.6898 0.6768 0.3695 38 1 6.1399 0.8739 0.2244 39 1 7.3632 -0.2771 -1.5762 40 1 6.1372 -1.6324 -3.2264 41 1 3.6880 -1.8365 -3.0762 42 1 2.5247 -2.8354 -1.2476 43 1 1.0779 -2.4120 -0.2900 44 1 1.3399 -2.8504 -3.2623 45 1 -0.0627 -3.1475 -2.1879 46 1 -0.6632 -0.8118 -2.1451 47 1 -0.1095 -1.0154 -3.8400 48 1 1.0357 0.8911 -2.3157 49 1 2.0790 -0.1355 -3.3470 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293262348.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:45 Heat of formation + Delta-G solvation = -53.323406 kcal Electronic energy + Delta-G solvation = -27092.959875 eV Core-core repulsion = 23596.872452 eV Total energy + Delta-G solvation = -3496.087423 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -41.97940 -40.20716 -38.81890 -35.82150 -35.47624 -33.20992 -32.56836 -31.77075 -31.31889 -29.57667 -28.09734 -27.67225 -24.81575 -23.64168 -23.05932 -22.44533 -21.87750 -20.80291 -19.72258 -18.84474 -18.17953 -17.44002 -17.34073 -16.50831 -16.36110 -16.23849 -16.08506 -15.53474 -15.17351 -14.88877 -14.76382 -14.42112 -14.32801 -14.15044 -14.05434 -13.65351 -13.25337 -13.13959 -13.10594 -12.80349 -12.78177 -12.55459 -12.50532 -12.10209 -12.01845 -11.92931 -11.90433 -11.85161 -11.65488 -11.50371 -11.35236 -11.30895 -11.19976 -10.65380 -10.57219 -10.04397 -9.75819 -9.52662 -8.18764 -6.33165 0.47351 0.52198 1.40576 1.45362 1.53102 1.74173 2.25437 2.44244 2.88746 3.13852 3.46777 3.57302 3.78779 4.00954 4.06232 4.11630 4.16917 4.27177 4.30064 4.33007 4.43546 4.49619 4.53194 4.60783 4.62343 4.67628 4.71310 4.73220 4.84972 4.89695 4.96804 5.03001 5.07995 5.11415 5.16159 5.18203 5.28550 5.30809 5.37657 5.39739 5.47209 5.57473 5.61274 5.61816 5.64981 5.67924 5.75694 5.84117 6.15216 6.16803 6.62290 6.84779 7.36125 7.38363 8.93682 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015471 B = 0.003362 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.379984 B = 8327.286319 C = 9345.372635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.153 3.847 3 H 0.056 0.944 4 N -0.710 5.710 5 C 0.514 3.486 6 O -0.587 6.587 7 C -0.121 4.121 8 C 0.046 3.954 9 C -0.545 4.545 10 H 0.074 0.926 11 C -0.006 4.006 12 N -0.937 5.937 13 Si 0.974 3.026 14 H -0.263 1.263 15 H -0.287 1.287 16 H -0.262 1.262 17 C -0.019 4.019 18 C -0.071 4.071 19 C -0.136 4.136 20 C -0.138 4.138 21 C -0.130 4.130 22 C -0.120 4.120 23 C -0.112 4.112 24 C -0.118 4.118 25 C -0.115 4.115 26 C -0.127 4.127 27 C -0.107 4.107 28 H 0.080 0.920 29 H 0.028 0.972 30 H 0.082 0.918 31 H 0.410 0.590 32 H 0.102 0.898 33 H 0.097 0.903 34 H -0.020 1.020 35 H -0.018 1.018 36 H 0.263 0.737 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.136 0.864 40 H 0.148 0.852 41 H 0.145 0.855 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.080 0.920 48 H 0.062 0.938 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.849 -11.722 -27.000 29.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.048 3.952 3 H 0.074 0.926 4 N -0.363 5.363 5 C 0.302 3.698 6 O -0.467 6.467 7 C -0.161 4.161 8 C 0.008 3.992 9 C -0.583 4.583 10 H 0.092 0.908 11 C -0.203 4.203 12 N -0.577 5.577 13 Si 0.797 3.203 14 H -0.187 1.187 15 H -0.212 1.212 16 H -0.186 1.186 17 C -0.020 4.020 18 C -0.071 4.071 19 C -0.154 4.154 20 C -0.156 4.156 21 C -0.147 4.147 22 C -0.138 4.138 23 C -0.130 4.130 24 C -0.155 4.155 25 C -0.153 4.153 26 C -0.164 4.164 27 C -0.145 4.145 28 H 0.099 0.901 29 H 0.048 0.952 30 H 0.101 0.899 31 H 0.247 0.753 32 H 0.120 0.880 33 H 0.115 0.885 34 H -0.001 1.001 35 H 0.000 1.000 36 H 0.072 0.928 37 H 0.116 0.884 38 H 0.129 0.871 39 H 0.154 0.846 40 H 0.166 0.834 41 H 0.163 0.837 42 H 0.094 0.906 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.093 0.907 46 H 0.091 0.909 47 H 0.098 0.902 48 H 0.080 0.920 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.065 -10.747 -26.858 28.948 hybrid contribution 0.501 0.298 1.517 1.625 sum -0.563 -10.449 -25.341 27.417 Atomic orbital electron populations 1.22304 0.94436 1.03319 1.01494 1.20941 0.94492 0.95952 0.83792 0.92630 1.46063 1.67272 1.14343 1.08656 1.21199 0.76180 0.86852 0.85551 1.90653 1.51697 1.18530 1.85787 1.21630 1.02771 0.99841 0.91815 1.18641 0.94690 0.93543 0.92285 1.21680 1.44165 0.97253 0.95195 0.90785 1.26135 0.95557 0.95561 1.03074 1.70174 1.49522 1.10305 1.27701 0.85379 0.79359 0.78157 0.77388 1.18749 1.21217 1.18614 1.20397 0.90326 0.97007 0.94269 1.19855 0.94897 0.97046 0.95267 1.21272 0.94822 0.99919 0.99374 1.21309 0.94555 1.00489 0.99236 1.21377 1.00773 0.97655 0.94937 1.21455 0.94518 0.98604 0.99219 1.21176 0.94344 0.99549 0.97888 1.22394 1.00525 0.92663 0.99968 1.22341 0.98840 0.97124 0.96970 1.22692 0.97094 0.94462 1.02151 1.22490 0.97766 0.99129 0.95129 0.90101 0.95247 0.89890 0.75273 0.88006 0.88469 1.00127 0.99958 0.92842 0.88436 0.87107 0.84621 0.83447 0.83690 0.90650 0.91193 0.90424 0.90729 0.90885 0.90165 0.91967 0.90169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.63 7.74 71.98 0.56 -3.08 16 2 C 0.15 3.88 0.99 44.99 0.04 3.92 16 3 H 0.06 1.81 6.37 -2.39 -0.02 1.79 16 4 N -0.71 -20.22 3.57 -442.54 -1.58 -21.79 16 5 C 0.51 20.59 7.07 87.66 0.62 21.21 16 6 O -0.59 -29.51 15.65 -3.05 -0.05 -29.56 16 7 C -0.12 -5.09 5.64 29.85 0.17 -4.92 16 8 C 0.05 2.64 4.26 29.85 0.13 2.77 16 9 C -0.55 -31.80 9.11 25.60 0.23 -31.56 16 10 H 0.07 3.94 7.74 -2.91 -0.02 3.91 16 11 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 12 N -0.94 -60.47 13.29 21.45 0.28 -60.19 16 13 Si 0.97 45.01 29.54 68.60 2.03 47.04 16 14 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 15 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 16 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 17 C -0.02 -0.35 0.47 -52.20 -0.02 -0.38 16 18 C -0.07 -1.49 4.59 -19.87 -0.09 -1.58 16 19 C -0.14 -3.74 8.56 22.27 0.19 -3.55 16 20 C -0.14 -3.58 10.05 22.27 0.22 -3.35 16 21 C -0.13 -2.61 10.05 22.27 0.22 -2.39 16 22 C -0.12 -1.99 10.05 22.27 0.22 -1.76 16 23 C -0.11 -1.86 8.02 22.27 0.18 -1.68 16 24 C -0.12 -1.63 4.47 31.32 0.14 -1.49 16 25 C -0.12 -1.14 6.84 31.70 0.22 -0.93 16 26 C -0.13 -1.38 6.29 31.91 0.20 -1.18 16 27 C -0.11 -1.59 5.27 31.67 0.17 -1.42 16 28 H 0.08 1.50 6.07 -2.39 -0.01 1.49 16 29 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.08 1.60 5.94 -2.39 -0.01 1.58 16 31 H 0.41 9.38 7.16 -92.71 -0.66 8.72 16 32 H 0.10 3.78 8.14 -2.39 -0.02 3.77 16 33 H 0.10 3.70 8.14 -2.39 -0.02 3.68 16 34 H -0.02 -1.28 8.10 -2.38 -0.02 -1.30 16 35 H -0.02 -1.17 8.10 -2.39 -0.02 -1.18 16 36 H 0.26 15.90 8.31 -92.71 -0.77 15.12 16 37 H 0.10 3.31 4.81 -2.91 -0.01 3.30 16 38 H 0.11 2.95 8.06 -2.91 -0.02 2.92 16 39 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 40 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 41 H 0.15 1.65 7.91 -2.91 -0.02 1.62 16 42 H 0.07 1.00 7.13 -2.39 -0.02 0.98 16 43 H 0.07 1.03 5.79 -2.39 -0.01 1.02 16 44 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.07 0.86 5.70 -2.39 -0.01 0.84 16 47 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 48 H 0.06 1.04 7.07 -2.38 -0.02 1.03 16 49 H 0.08 1.08 7.23 -2.39 -0.02 1.06 16 Total: -1.00 -77.66 374.73 4.83 -72.83 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: 0.28 Total: 22.91 kcal Atomic # 6 Polarization: -35.11 SS G_CDS: 3.86 Total: -31.25 kcal Atomic # 7 Polarization: -80.69 SS G_CDS: -1.29 Total: -81.98 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -0.05 Total: -29.56 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -77.66 4.83 -72.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293262348.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.509 kcal (2) G-P(sol) polarization free energy of solvation -77.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds