Wall clock time and date at job start Tue Mar 31 2020 11:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46569 * 2 1 4 4 C 1.53001 * 109.46959 * 239.99964 * 2 1 3 5 5 C 1.50703 * 109.46667 * 174.99835 * 4 2 1 6 6 H 1.07998 * 120.00258 * 359.97438 * 5 4 2 7 7 C 1.37885 * 119.99384 * 179.72838 * 5 4 2 8 8 N 1.31513 * 119.99408 * 180.27365 * 7 5 4 9 9 Si 1.86797 * 120.00243 * 0.27423 * 7 5 4 10 10 H 1.48499 * 109.46958 * 90.00476 * 9 7 5 11 11 H 1.48496 * 109.47028 * 210.00189 * 9 7 5 12 12 H 1.48498 * 109.47128 * 330.00218 * 9 7 5 13 13 N 1.46895 * 109.47060 * 120.00102 * 2 1 3 14 14 C 1.46909 * 110.99868 * 249.28967 * 13 2 1 15 15 H 1.08999 * 110.28252 * 324.45759 * 14 13 2 16 16 C 1.51492 * 110.31970 * 86.58137 * 14 13 2 17 17 C 1.38468 * 130.36625 * 282.46935 * 16 14 13 18 18 C 1.38110 * 120.21927 * 179.97438 * 17 16 14 19 19 C 1.38255 * 119.92931 * 0.02562 * 18 17 16 20 20 C 1.38110 * 119.94045 * 0.02562 * 19 18 17 21 21 C 1.38265 * 109.78481 * 102.45382 * 16 14 13 22 22 C 1.51496 * 109.77636 * 0.02562 * 21 16 14 23 23 C 1.53669 * 110.31834 * 202.33282 * 14 13 2 24 24 C 1.52352 * 110.70615 * 147.99584 * 23 14 13 25 25 C 1.53234 * 109.29084 * 181.87390 * 24 23 14 26 26 O 1.42927 * 109.33299 * 56.29879 * 25 24 23 27 27 C 1.42914 * 114.21351 * 298.26121 * 26 25 24 28 28 C 1.52393 * 110.60908 * 24.79674 * 23 14 13 29 29 H 1.08996 * 109.47114 * 186.61176 * 1 2 3 30 30 H 1.08998 * 109.46920 * 306.61021 * 1 2 3 31 31 H 1.08994 * 109.47155 * 66.60879 * 1 2 3 32 32 H 1.09007 * 109.47017 * 55.00230 * 4 2 1 33 33 H 1.08996 * 109.47278 * 294.99888 * 4 2 1 34 34 H 0.97006 * 120.00204 * 179.97438 * 8 7 5 35 35 H 1.00905 * 111.00387 * 13.24561 * 13 2 1 36 36 H 1.08004 * 119.89735 * 359.96620 * 17 16 14 37 37 H 1.07997 * 120.03581 * 180.02562 * 18 17 16 38 38 H 1.07999 * 120.03288 * 180.02562 * 19 18 17 39 39 H 1.08001 * 119.89411 * 179.97438 * 20 19 18 40 40 H 1.09000 * 110.31922 * 135.31734 * 22 21 16 41 41 H 1.09005 * 110.32322 * 257.41227 * 22 21 16 42 42 H 1.09001 * 109.50427 * 301.81636 * 24 23 14 43 43 H 1.08998 * 109.50583 * 61.93340 * 24 23 14 44 44 H 1.08998 * 109.49172 * 296.34307 * 25 24 23 45 45 H 1.08995 * 109.51826 * 176.26685 * 25 24 23 46 46 H 1.09003 * 109.50439 * 301.87966 * 27 26 25 47 47 H 1.08995 * 109.53733 * 181.78323 * 27 26 25 48 48 H 1.09006 * 109.51220 * 298.19289 * 28 23 14 49 49 H 1.09000 * 109.50877 * 58.28561 * 28 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6148 -1.3127 6 1 4.0789 -0.0854 -0.5396 7 6 4.2309 -1.1979 -2.3551 8 7 5.5420 -1.1096 -2.4076 9 14 3.3020 -2.1130 -3.6927 10 1 2.9466 -1.1692 -4.7828 11 1 4.1581 -3.1976 -4.2365 12 1 2.0628 -2.6995 -3.1221 13 7 2.0197 -0.6925 1.1994 14 6 2.6525 0.2512 2.1307 15 1 3.1798 1.0297 1.5795 16 6 1.6122 0.8660 3.0444 17 6 0.6908 1.8717 2.8056 18 6 -0.1726 2.2751 3.8052 19 6 -0.1172 1.6736 5.0488 20 6 0.8018 0.6711 5.2893 21 6 1.6673 0.2643 4.2880 22 6 2.7490 -0.7964 4.2968 23 6 3.6207 -0.4902 3.0657 24 6 4.7944 0.4043 3.4448 25 6 5.7613 -0.3806 4.3376 26 8 6.1725 -1.5695 3.6592 27 6 5.1053 -2.4705 3.3564 28 6 4.1105 -1.7796 2.4177 29 1 -0.3633 -1.0208 0.1183 30 1 -0.3633 0.6129 0.8249 31 1 -0.3633 0.4080 -0.9432 32 1 1.6054 -0.2617 -2.1370 33 1 1.7517 -1.7715 -1.2056 34 1 6.0268 -1.5201 -3.1408 35 1 1.2757 -1.2027 1.6515 36 1 0.6473 2.3424 1.8345 37 1 -0.8903 3.0595 3.6156 38 1 -0.7919 1.9875 5.8316 39 1 0.8447 0.2021 6.2612 40 1 3.3426 -0.7241 5.2081 41 1 2.3066 -1.7890 4.2116 42 1 5.3130 0.7263 2.5418 43 1 4.4273 1.2768 3.9851 44 1 5.2613 -0.6475 5.2686 45 1 6.6346 0.2336 4.5567 46 1 4.5978 -2.7563 4.2778 47 1 5.5061 -3.3602 2.8708 48 1 3.2629 -2.4403 2.2356 49 1 4.6015 -1.5483 1.4724 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298582559.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:33 Heat of formation + Delta-G solvation = -25.012075 kcal Electronic energy + Delta-G solvation = -28152.955056 eV Core-core repulsion = 24658.095304 eV Total energy + Delta-G solvation = -3494.859752 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.96870 -38.57947 -36.80110 -35.23365 -32.48627 -31.29208 -31.26555 -30.87708 -29.55073 -27.83047 -26.68000 -25.62688 -23.30131 -22.83247 -22.53903 -21.47083 -20.55432 -19.68689 -18.38999 -16.65622 -16.32043 -16.03519 -15.71684 -15.25906 -15.14878 -14.75346 -14.36327 -14.33204 -14.12343 -13.84504 -13.56631 -13.08156 -12.97010 -12.78433 -12.35223 -12.19209 -12.13252 -12.05016 -11.79312 -11.75672 -11.66377 -11.32101 -10.98897 -10.89707 -10.83569 -10.69492 -10.44134 -10.22140 -10.15739 -9.83190 -9.74555 -9.53773 -9.11598 -8.91639 -8.81411 -8.56402 -8.37953 -7.59127 -5.87217 -3.80695 1.38912 1.41978 3.38380 3.46665 3.50043 3.78394 4.19124 4.41266 4.58237 4.60940 4.77368 4.98902 5.04071 5.04766 5.13793 5.30039 5.34779 5.39493 5.45803 5.49389 5.53394 5.60902 5.63595 5.71557 5.73993 5.79650 5.80639 5.89786 5.94739 6.00872 6.03261 6.05269 6.17992 6.29997 6.34020 6.38928 6.42280 6.48488 6.52329 6.58473 6.70850 6.75907 6.87145 7.03780 7.16584 7.22876 7.34727 7.52999 7.84595 7.93022 8.08616 8.74686 9.21181 9.76326 11.26431 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011588 B = 0.005644 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.682748 B = 4959.979097 C = 6813.672227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.098 3.902 3 H 0.059 0.941 4 C -0.002 4.002 5 C -0.486 4.486 6 H 0.073 0.927 7 C 0.063 3.937 8 N -0.907 5.907 9 Si 0.873 3.127 10 H -0.282 1.282 11 H -0.291 1.291 12 H -0.268 1.268 13 N -0.641 5.641 14 C 0.140 3.860 15 H 0.089 0.911 16 C -0.120 4.120 17 C -0.098 4.098 18 C -0.127 4.127 19 C -0.123 4.123 20 C -0.114 4.114 21 C -0.087 4.087 22 C -0.078 4.078 23 C -0.042 4.042 24 C -0.141 4.141 25 C 0.066 3.934 26 O -0.383 6.383 27 C 0.058 3.942 28 C -0.120 4.120 29 H 0.052 0.948 30 H 0.045 0.955 31 H 0.056 0.944 32 H 0.007 0.993 33 H 0.018 0.982 34 H 0.259 0.741 35 H 0.328 0.672 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.044 0.956 45 H 0.088 0.912 46 H 0.038 0.962 47 H 0.090 0.910 48 H 0.080 0.920 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.716 3.104 16.588 18.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.011 4.011 3 H 0.077 0.923 4 C -0.040 4.040 5 C -0.525 4.525 6 H 0.092 0.908 7 C -0.137 4.137 8 N -0.547 5.547 9 Si 0.701 3.299 10 H -0.208 1.208 11 H -0.218 1.218 12 H -0.193 1.193 13 N -0.268 5.268 14 C 0.030 3.970 15 H 0.107 0.893 16 C -0.122 4.122 17 C -0.117 4.117 18 C -0.145 4.145 19 C -0.141 4.141 20 C -0.133 4.133 21 C -0.087 4.087 22 C -0.115 4.115 23 C -0.042 4.042 24 C -0.179 4.179 25 C -0.011 4.011 26 O -0.302 6.302 27 C -0.018 4.018 28 C -0.157 4.157 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.025 0.975 33 H 0.036 0.964 34 H 0.068 0.932 35 H 0.146 0.854 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.133 0.867 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.084 0.916 44 H 0.062 0.938 45 H 0.106 0.894 46 H 0.057 0.943 47 H 0.108 0.892 48 H 0.099 0.901 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.769 2.797 16.091 18.086 hybrid contribution -1.712 0.145 -0.356 1.755 sum -9.481 2.942 15.735 18.605 Atomic orbital electron populations 1.22514 0.98507 1.01218 1.01231 1.21613 0.90413 0.97192 0.91853 0.92296 1.19628 0.97680 0.95615 0.91104 1.20969 0.89483 1.33531 1.08480 0.90842 1.24982 0.94610 0.96275 0.97830 1.69914 1.06319 1.46133 1.32383 0.86903 0.80264 0.80010 0.82711 1.20850 1.21773 1.19303 1.60733 1.34780 1.25606 1.05669 1.21115 0.91573 0.93104 0.91239 0.89271 1.21677 0.98120 0.95921 0.96489 1.20701 0.95290 0.96599 0.99097 1.21004 0.99499 1.00453 0.93542 1.20964 0.98942 0.97110 0.97082 1.20583 0.96112 0.98040 0.98520 1.20684 0.96722 0.97427 0.93899 1.21295 0.94329 0.96975 0.98917 1.20644 0.93590 0.96570 0.93439 1.22039 0.96318 0.98125 1.01378 1.22527 0.98127 0.86785 0.93691 1.87926 1.33343 1.30857 1.78028 1.22748 0.89010 0.92607 0.97466 1.21843 0.99189 0.94873 0.99845 0.92925 0.93640 0.92505 0.97453 0.96373 0.93166 0.85425 0.86470 0.86359 0.86401 0.86733 0.91045 0.90115 0.90107 0.91561 0.93818 0.89416 0.94325 0.89165 0.90128 0.88387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.72 9.09 37.16 0.34 -2.38 16 2 C 0.10 1.82 2.66 -67.71 -0.18 1.64 16 3 H 0.06 1.14 7.19 -51.93 -0.37 0.77 16 4 C 0.00 -0.06 3.72 -27.88 -0.10 -0.16 16 5 C -0.49 -13.31 9.39 -34.44 -0.32 -13.63 16 6 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 7 C 0.06 1.80 5.47 -17.82 -0.10 1.71 16 8 N -0.91 -27.90 13.96 55.43 0.77 -27.13 16 9 Si 0.87 21.91 27.47 -169.99 -4.67 17.24 16 10 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 13 N -0.64 -10.93 4.24 -100.17 -0.43 -11.36 16 14 C 0.14 2.20 2.47 -68.12 -0.17 2.03 16 15 H 0.09 1.61 7.20 -51.93 -0.37 1.24 16 16 C -0.12 -1.67 5.45 -104.14 -0.57 -2.24 16 17 C -0.10 -1.29 8.75 -39.54 -0.35 -1.64 16 18 C -0.13 -1.45 10.05 -39.62 -0.40 -1.85 16 19 C -0.12 -1.33 10.05 -39.62 -0.40 -1.72 16 20 C -0.11 -1.31 10.04 -39.54 -0.40 -1.70 16 21 C -0.09 -1.11 6.15 -104.14 -0.64 -1.75 16 22 C -0.08 -0.96 5.01 -27.01 -0.14 -1.09 16 23 C -0.04 -0.60 0.53 -154.32 -0.08 -0.68 16 24 C -0.14 -1.98 4.81 -26.94 -0.13 -2.11 16 25 C 0.07 0.86 6.66 37.28 0.25 1.11 16 26 O -0.38 -6.16 10.75 -35.23 -0.38 -6.53 16 27 C 0.06 0.85 6.67 37.28 0.25 1.10 16 28 C -0.12 -1.94 4.10 -26.92 -0.11 -2.05 16 29 H 0.05 0.79 8.05 -51.93 -0.42 0.37 16 30 H 0.04 0.63 6.49 -51.93 -0.34 0.30 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.01 0.17 7.58 -51.92 -0.39 -0.22 16 33 H 0.02 0.43 7.19 -51.93 -0.37 0.06 16 34 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.33 5.20 7.84 -39.29 -0.31 4.89 16 36 H 0.12 1.52 7.79 -52.48 -0.41 1.11 16 37 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 38 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.11 1.09 8.06 -52.49 -0.42 0.66 16 40 H 0.07 0.80 6.34 -51.93 -0.33 0.47 16 41 H 0.08 0.96 7.79 -51.93 -0.40 0.56 16 42 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.04 0.50 6.66 -51.93 -0.35 0.15 16 45 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.04 0.48 7.64 -51.93 -0.40 0.08 16 47 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 48 H 0.08 1.29 7.34 -51.93 -0.38 0.91 16 49 H 0.10 2.06 8.14 -51.93 -0.42 1.64 16 LS Contribution 372.63 15.07 5.62 5.62 Total: -1.00 -30.26 372.63 -10.56 -40.82 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -8.23 Total: 6.77 kcal Atomic # 6 Polarization: -22.18 SS G_CDS: -3.24 Total: -25.42 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.35 Total: -38.49 kcal Atomic # 8 Polarization: -6.16 SS G_CDS: -0.38 Total: -6.53 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.26 -10.56 -40.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298582559.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.804 kcal (2) G-P(sol) polarization free energy of solvation -30.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds