Wall clock time and date at job start Tue Mar 31 2020 11:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46569 * 2 1 4 4 C 1.53001 * 109.46959 * 239.99964 * 2 1 3 5 5 C 1.50703 * 109.46667 * 174.99835 * 4 2 1 6 6 H 1.07998 * 120.00258 * 359.97438 * 5 4 2 7 7 C 1.37885 * 119.99384 * 179.72838 * 5 4 2 8 8 N 1.31513 * 119.99408 * 180.27365 * 7 5 4 9 9 Si 1.86797 * 120.00243 * 0.27423 * 7 5 4 10 10 H 1.48499 * 109.46958 * 90.00476 * 9 7 5 11 11 H 1.48496 * 109.47028 * 210.00189 * 9 7 5 12 12 H 1.48498 * 109.47128 * 330.00218 * 9 7 5 13 13 N 1.46895 * 109.47060 * 120.00102 * 2 1 3 14 14 C 1.46909 * 110.99868 * 249.28967 * 13 2 1 15 15 H 1.08999 * 110.28252 * 324.45759 * 14 13 2 16 16 C 1.51492 * 110.31970 * 86.58137 * 14 13 2 17 17 C 1.38468 * 130.36625 * 282.46935 * 16 14 13 18 18 C 1.38110 * 120.21927 * 179.97438 * 17 16 14 19 19 C 1.38255 * 119.92931 * 0.02562 * 18 17 16 20 20 C 1.38110 * 119.94045 * 0.02562 * 19 18 17 21 21 C 1.38265 * 109.78481 * 102.45382 * 16 14 13 22 22 C 1.51496 * 109.77636 * 0.02562 * 21 16 14 23 23 C 1.53669 * 110.31834 * 202.33282 * 14 13 2 24 24 C 1.52352 * 110.70615 * 147.99584 * 23 14 13 25 25 C 1.53234 * 109.29084 * 181.87390 * 24 23 14 26 26 O 1.42927 * 109.33299 * 56.29879 * 25 24 23 27 27 C 1.42914 * 114.21351 * 298.26121 * 26 25 24 28 28 C 1.52393 * 110.60908 * 24.79674 * 23 14 13 29 29 H 1.08996 * 109.47114 * 186.61176 * 1 2 3 30 30 H 1.08998 * 109.46920 * 306.61021 * 1 2 3 31 31 H 1.08994 * 109.47155 * 66.60879 * 1 2 3 32 32 H 1.09007 * 109.47017 * 55.00230 * 4 2 1 33 33 H 1.08996 * 109.47278 * 294.99888 * 4 2 1 34 34 H 0.97006 * 120.00204 * 179.97438 * 8 7 5 35 35 H 1.00905 * 111.00387 * 13.24561 * 13 2 1 36 36 H 1.08004 * 119.89735 * 359.96620 * 17 16 14 37 37 H 1.07997 * 120.03581 * 180.02562 * 18 17 16 38 38 H 1.07999 * 120.03288 * 180.02562 * 19 18 17 39 39 H 1.08001 * 119.89411 * 179.97438 * 20 19 18 40 40 H 1.09000 * 110.31922 * 135.31734 * 22 21 16 41 41 H 1.09005 * 110.32322 * 257.41227 * 22 21 16 42 42 H 1.09001 * 109.50427 * 301.81636 * 24 23 14 43 43 H 1.08998 * 109.50583 * 61.93340 * 24 23 14 44 44 H 1.08998 * 109.49172 * 296.34307 * 25 24 23 45 45 H 1.08995 * 109.51826 * 176.26685 * 25 24 23 46 46 H 1.09003 * 109.50439 * 301.87966 * 27 26 25 47 47 H 1.08995 * 109.53733 * 181.78323 * 27 26 25 48 48 H 1.09006 * 109.51220 * 298.19289 * 28 23 14 49 49 H 1.09000 * 109.50877 * 58.28561 * 28 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6148 -1.3127 6 1 4.0789 -0.0854 -0.5396 7 6 4.2309 -1.1979 -2.3551 8 7 5.5420 -1.1096 -2.4076 9 14 3.3020 -2.1130 -3.6927 10 1 2.9466 -1.1692 -4.7828 11 1 4.1581 -3.1976 -4.2365 12 1 2.0628 -2.6995 -3.1221 13 7 2.0197 -0.6925 1.1994 14 6 2.6525 0.2512 2.1307 15 1 3.1798 1.0297 1.5795 16 6 1.6122 0.8660 3.0444 17 6 0.6908 1.8717 2.8056 18 6 -0.1726 2.2751 3.8052 19 6 -0.1172 1.6736 5.0488 20 6 0.8018 0.6711 5.2893 21 6 1.6673 0.2643 4.2880 22 6 2.7490 -0.7964 4.2968 23 6 3.6207 -0.4902 3.0657 24 6 4.7944 0.4043 3.4448 25 6 5.7613 -0.3806 4.3376 26 8 6.1725 -1.5695 3.6592 27 6 5.1053 -2.4705 3.3564 28 6 4.1105 -1.7796 2.4177 29 1 -0.3633 -1.0208 0.1183 30 1 -0.3633 0.6129 0.8249 31 1 -0.3633 0.4080 -0.9432 32 1 1.6054 -0.2617 -2.1370 33 1 1.7517 -1.7715 -1.2056 34 1 6.0268 -1.5201 -3.1408 35 1 1.2757 -1.2027 1.6515 36 1 0.6473 2.3424 1.8345 37 1 -0.8903 3.0595 3.6156 38 1 -0.7919 1.9875 5.8316 39 1 0.8447 0.2021 6.2612 40 1 3.3426 -0.7241 5.2081 41 1 2.3066 -1.7890 4.2116 42 1 5.3130 0.7263 2.5418 43 1 4.4273 1.2768 3.9851 44 1 5.2613 -0.6475 5.2686 45 1 6.6346 0.2336 4.5567 46 1 4.5978 -2.7563 4.2778 47 1 5.5061 -3.3602 2.8708 48 1 3.2629 -2.4403 2.2356 49 1 4.6015 -1.5483 1.4724 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298582559.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:32 Heat of formation + Delta-G solvation = -42.353683 kcal Electronic energy + Delta-G solvation = -28153.707045 eV Core-core repulsion = 24658.095304 eV Total energy + Delta-G solvation = -3495.611741 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.08651 -39.67093 -38.11956 -36.53022 -34.55826 -32.56796 -32.34590 -32.05768 -30.85336 -29.58914 -27.69330 -26.81189 -24.74107 -24.35399 -23.80020 -22.47455 -21.61232 -21.33914 -19.58892 -18.73389 -17.48682 -17.15814 -16.91068 -16.52990 -16.34229 -16.09456 -15.86091 -15.44031 -15.38013 -15.20951 -14.93363 -14.54429 -14.16281 -13.96518 -13.81362 -13.71238 -13.46384 -13.32244 -13.18713 -13.08159 -12.94406 -12.62867 -12.41564 -12.20211 -12.13975 -11.97160 -11.91672 -11.63386 -11.60869 -11.36483 -11.35917 -11.04466 -11.00087 -10.64515 -10.27254 -9.77247 -9.51526 -8.93588 -8.13961 -6.11733 0.45728 0.50494 1.36330 1.38880 1.49886 2.43851 2.84905 3.05086 3.18844 3.30866 3.42647 3.67473 3.89432 4.00908 4.13517 4.16029 4.18054 4.22210 4.24080 4.30382 4.32938 4.42330 4.51123 4.55100 4.59916 4.69471 4.72528 4.78169 4.83201 4.84189 4.91054 4.93049 5.02312 5.09115 5.14637 5.17191 5.21995 5.26061 5.28247 5.32484 5.48468 5.51315 5.59210 5.63906 5.69527 5.79741 5.82145 6.14463 6.34759 6.37806 6.48417 6.75724 6.95427 7.48320 9.03181 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011588 B = 0.005644 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.682748 B = 4959.979097 C = 6813.672227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.106 3.894 3 H 0.039 0.961 4 C 0.000 4.000 5 C -0.479 4.479 6 H 0.031 0.969 7 C -0.002 4.002 8 N -0.958 5.958 9 Si 0.942 3.058 10 H -0.273 1.273 11 H -0.292 1.292 12 H -0.250 1.250 13 N -0.653 5.653 14 C 0.145 3.855 15 H 0.045 0.955 16 C -0.137 4.137 17 C -0.114 4.114 18 C -0.127 4.127 19 C -0.117 4.117 20 C -0.113 4.113 21 C -0.090 4.090 22 C -0.067 4.067 23 C -0.041 4.041 24 C -0.137 4.137 25 C 0.065 3.935 26 O -0.410 6.410 27 C 0.061 3.939 28 C -0.109 4.109 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.011 0.989 33 H 0.017 0.983 34 H 0.258 0.742 35 H 0.337 0.663 36 H 0.107 0.893 37 H 0.140 0.860 38 H 0.149 0.851 39 H 0.142 0.858 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.038 0.962 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.100 0.900 46 H 0.075 0.925 47 H 0.085 0.915 48 H 0.081 0.919 49 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.990 2.626 19.419 22.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.004 4.004 3 H 0.057 0.943 4 C -0.038 4.038 5 C -0.517 4.517 6 H 0.049 0.951 7 C -0.197 4.197 8 N -0.601 5.601 9 Si 0.768 3.232 10 H -0.199 1.199 11 H -0.218 1.218 12 H -0.173 1.173 13 N -0.281 5.281 14 C 0.034 3.966 15 H 0.063 0.937 16 C -0.139 4.139 17 C -0.132 4.132 18 C -0.145 4.145 19 C -0.135 4.135 20 C -0.131 4.131 21 C -0.091 4.091 22 C -0.103 4.103 23 C -0.042 4.042 24 C -0.175 4.175 25 C -0.012 4.012 26 O -0.329 6.329 27 C -0.016 4.016 28 C -0.147 4.147 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.030 0.970 33 H 0.035 0.965 34 H 0.067 0.933 35 H 0.156 0.844 36 H 0.125 0.875 37 H 0.158 0.842 38 H 0.167 0.833 39 H 0.160 0.840 40 H 0.111 0.889 41 H 0.108 0.892 42 H 0.057 0.943 43 H 0.099 0.901 44 H 0.094 0.906 45 H 0.118 0.882 46 H 0.093 0.907 47 H 0.104 0.896 48 H 0.099 0.901 49 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -11.069 2.330 18.938 22.059 hybrid contribution -0.644 0.412 -1.186 1.411 sum -11.713 2.742 17.752 21.444 Atomic orbital electron populations 1.22353 0.95231 1.02234 1.02290 1.21338 0.92864 0.95392 0.90779 0.94295 1.19597 0.94470 0.96049 0.93693 1.21203 0.91910 1.31845 1.06781 0.95117 1.25890 0.95397 0.97666 1.00727 1.70098 1.08350 1.48044 1.33570 0.85781 0.79311 0.78634 0.79518 1.19852 1.21830 1.17337 1.60557 1.35116 1.26498 1.05924 1.20908 0.92324 0.92135 0.91208 0.93668 1.21396 0.98410 0.97377 0.96709 1.20770 0.96043 0.96832 0.99580 1.21281 0.99142 1.00734 0.93366 1.21368 0.98684 0.96082 0.97326 1.20901 0.95250 0.97856 0.99068 1.20736 0.97282 0.97425 0.93673 1.21180 0.93922 0.97398 0.97834 1.20591 0.93786 0.95291 0.94512 1.21984 0.96401 0.98962 1.00124 1.22715 0.98642 0.85790 0.94007 1.87892 1.34412 1.31975 1.78641 1.22772 0.88416 0.91961 0.98416 1.21637 0.99127 0.96261 0.97649 0.91987 0.91904 0.91974 0.97040 0.96517 0.93311 0.84382 0.87454 0.84236 0.83293 0.84036 0.88929 0.89171 0.94264 0.90067 0.90615 0.88160 0.90670 0.89633 0.90068 0.94914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.82 9.09 71.98 0.65 -4.17 16 2 C 0.11 4.06 2.66 44.92 0.12 4.18 16 3 H 0.04 1.63 7.19 -2.39 -0.02 1.61 16 4 C 0.00 0.00 3.72 29.85 0.11 0.11 16 5 C -0.48 -27.89 9.39 25.60 0.24 -27.65 16 6 H 0.03 2.00 7.99 -2.91 -0.02 1.98 16 7 C 0.00 -0.13 5.47 84.66 0.46 0.33 16 8 N -0.96 -62.40 13.96 21.45 0.30 -62.10 16 9 Si 0.94 46.23 27.47 68.60 1.88 48.12 16 10 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 11 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 12 H -0.25 -11.40 6.54 99.48 0.65 -10.75 16 13 N -0.65 -23.28 4.24 -470.83 -2.00 -25.27 16 14 C 0.14 4.83 2.47 44.64 0.11 4.94 16 15 H 0.04 1.86 7.20 -2.39 -0.02 1.84 16 16 C -0.14 -3.74 5.45 -19.55 -0.11 -3.85 16 17 C -0.11 -2.87 8.75 22.29 0.20 -2.68 16 18 C -0.13 -2.52 10.05 22.24 0.22 -2.30 16 19 C -0.12 -2.00 10.05 22.24 0.22 -1.77 16 20 C -0.11 -2.08 10.04 22.29 0.22 -1.86 16 21 C -0.09 -2.07 6.15 -19.55 -0.12 -2.19 16 22 C -0.07 -1.47 5.01 30.41 0.15 -1.32 16 23 C -0.04 -1.22 0.53 -52.06 -0.03 -1.25 16 24 C -0.14 -4.03 4.81 30.46 0.15 -3.88 16 25 C 0.06 1.65 6.66 72.06 0.48 2.13 16 26 O -0.41 -13.36 10.75 -148.98 -1.60 -14.96 16 27 C 0.06 1.77 6.67 72.06 0.48 2.25 16 28 C -0.11 -3.75 4.10 30.47 0.13 -3.62 16 29 H 0.06 1.73 8.05 -2.39 -0.02 1.71 16 30 H 0.06 1.65 6.49 -2.39 -0.02 1.64 16 31 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.01 0.53 7.58 -2.38 -0.02 0.51 16 33 H 0.02 0.79 7.19 -2.39 -0.02 0.77 16 34 H 0.26 15.90 8.31 -92.70 -0.77 15.13 16 35 H 0.34 10.67 7.84 -89.69 -0.70 9.96 16 36 H 0.11 2.83 7.79 -2.91 -0.02 2.81 16 37 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 38 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 39 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 40 H 0.09 1.68 6.34 -2.39 -0.02 1.66 16 41 H 0.09 1.86 7.79 -2.38 -0.02 1.84 16 42 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.08 1.48 6.66 -2.39 -0.02 1.46 16 45 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 46 H 0.08 1.67 7.64 -2.39 -0.02 1.65 16 47 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 48 H 0.08 2.70 7.34 -2.38 -0.02 2.69 16 49 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -71.40 372.63 2.45 -68.95 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 0.17 Total: 27.87 kcal Atomic # 6 Polarization: -46.30 SS G_CDS: 3.69 Total: -42.61 kcal Atomic # 7 Polarization: -85.67 SS G_CDS: -1.70 Total: -87.37 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -1.60 Total: -14.96 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.88 Total: 48.12 kcal Total: -71.40 2.45 -68.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298582559.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.598 kcal (2) G-P(sol) polarization free energy of solvation -71.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds