Wall clock time and date at job start Tue Mar 31 2020 11:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47311 * 2 1 4 4 C 1.53000 * 109.46724 * 239.99708 * 2 1 3 5 5 C 1.50707 * 109.46940 * 175.00043 * 4 2 1 6 6 H 1.07995 * 119.99656 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00233 * 180.02562 * 5 4 2 8 8 N 1.31524 * 119.99921 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00389 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47101 * 89.99607 * 9 7 5 11 11 H 1.48499 * 109.47303 * 210.00185 * 9 7 5 12 12 H 1.48496 * 109.46831 * 330.00062 * 9 7 5 13 13 N 1.46899 * 109.46976 * 120.00009 * 2 1 3 14 14 C 1.46903 * 111.00134 * 274.99560 * 13 2 1 15 15 H 1.09003 * 110.36242 * 32.82638 * 14 13 2 16 16 C 1.51489 * 110.32180 * 270.64613 * 14 13 2 17 17 C 1.38473 * 130.36729 * 77.55862 * 16 14 13 18 18 C 1.38109 * 120.22044 * 180.02562 * 17 16 14 19 19 C 1.38260 * 119.93034 * 0.02562 * 18 17 16 20 20 C 1.38104 * 119.93976 * 359.96944 * 19 18 17 21 21 C 1.38262 * 109.78489 * 257.55063 * 16 14 13 22 22 C 1.51496 * 109.78465 * 359.94708 * 21 16 14 23 23 C 1.53666 * 105.07846 * 343.63519 * 22 21 16 24 24 C 1.52356 * 110.71721 * 266.84556 * 23 22 21 25 25 C 1.53223 * 109.29477 * 291.91765 * 24 23 22 26 26 O 1.42908 * 109.36368 * 303.70676 * 25 24 23 27 27 C 1.42972 * 114.19007 * 61.70106 * 26 25 24 28 28 C 1.52396 * 110.62198 * 143.63133 * 23 22 21 29 29 H 1.08996 * 109.47348 * 60.00072 * 1 2 3 30 30 H 1.09004 * 109.47334 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47054 * 300.00256 * 1 2 3 32 32 H 1.08993 * 109.47530 * 294.99917 * 4 2 1 33 33 H 1.09006 * 109.47215 * 55.00443 * 4 2 1 34 34 H 0.97000 * 119.99912 * 179.97438 * 8 7 5 35 35 H 1.00899 * 111.00085 * 151.04367 * 13 2 1 36 36 H 1.08007 * 119.89390 * 0.04662 * 17 16 14 37 37 H 1.07998 * 120.03601 * 179.97438 * 18 17 16 38 38 H 1.07999 * 120.02601 * 179.97438 * 19 18 17 39 39 H 1.08002 * 119.89270 * 180.02562 * 20 19 18 40 40 H 1.08996 * 110.31904 * 224.73277 * 22 21 16 41 41 H 1.08998 * 110.31876 * 102.53937 * 22 21 16 42 42 H 1.09001 * 109.49636 * 171.97295 * 24 23 22 43 43 H 1.09001 * 109.52792 * 51.88570 * 24 23 22 44 44 H 1.09002 * 109.49308 * 63.68309 * 25 24 23 45 45 H 1.08996 * 109.49203 * 183.73755 * 25 24 23 46 46 H 1.09001 * 109.49113 * 178.25533 * 27 26 25 47 47 H 1.09003 * 109.52653 * 58.16909 * 27 26 25 48 48 H 1.08993 * 109.51012 * 187.96956 * 28 23 22 49 49 H 1.09001 * 109.51304 * 308.11477 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3128 6 1 4.0789 -0.0863 -0.5393 7 6 4.2303 -1.1928 -2.3583 8 7 3.5762 -1.8371 -3.3000 9 14 6.0920 -1.0616 -2.4367 10 1 6.6998 -2.2149 -1.7255 11 1 6.5294 -1.0687 -3.8558 12 1 6.5267 0.2030 -1.7910 13 7 2.0196 -0.6925 1.1994 14 6 2.0825 0.2226 2.3469 15 1 1.2860 0.9641 2.2848 16 6 3.4338 0.9052 2.4020 17 6 3.9367 1.9600 1.6591 18 6 5.2180 2.4222 1.8871 19 6 6.0022 1.8300 2.8597 20 6 5.5024 0.7779 3.6018 21 6 4.2175 0.3138 3.3755 22 6 3.4471 -0.8067 4.0434 23 6 1.9782 -0.5638 3.6630 24 6 1.2747 0.2644 4.7309 25 6 1.1465 -0.5655 6.0125 26 8 0.4594 -1.7842 5.7210 27 6 1.1308 -2.6244 4.7790 28 6 1.2553 -1.8870 3.4415 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.7516 -1.7715 -1.2056 33 1 1.6053 -0.2618 -2.1370 34 1 4.0605 -2.2433 -4.0358 35 1 2.9172 -1.1205 1.0288 36 1 3.3248 2.4231 0.8991 37 1 5.6074 3.2448 1.3056 38 1 7.0045 2.1899 3.0389 39 1 6.1155 0.3161 4.3616 40 1 3.5709 -0.7587 5.1252 41 1 3.7811 -1.7731 3.6659 42 1 0.2823 0.5452 4.3784 43 1 1.8558 1.1635 4.9362 44 1 2.1398 -0.7917 6.4003 45 1 0.5854 -0.0008 6.7569 46 1 0.5587 -3.5413 4.6371 47 1 2.1247 -2.8698 5.1532 48 1 0.2613 -1.6956 3.0374 49 1 1.8225 -2.4988 2.7400 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298582563.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:38 Heat of formation + Delta-G solvation = -35.431661 kcal Electronic energy + Delta-G solvation = -28114.073212 eV Core-core repulsion = 24618.761633 eV Total energy + Delta-G solvation = -3495.311579 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.97408 -38.63931 -36.70601 -35.21053 -32.61026 -31.34253 -31.14492 -31.08788 -29.23953 -27.39915 -26.65522 -25.74433 -23.53453 -23.05575 -22.68984 -21.35242 -20.42071 -19.39192 -18.53561 -16.41085 -16.34944 -16.07671 -15.95635 -15.36138 -15.02686 -14.84286 -14.58392 -14.42092 -14.27017 -13.85095 -13.41995 -13.09720 -12.82813 -12.81301 -12.31128 -12.26922 -12.03820 -11.88182 -11.62435 -11.59306 -11.28261 -11.25484 -11.17576 -10.95038 -10.80360 -10.66005 -10.56262 -10.41503 -10.30495 -10.24175 -10.05887 -9.39750 -9.16829 -9.08614 -8.58068 -8.41677 -8.35143 -7.61995 -6.02455 -4.04689 1.59771 1.65284 3.28989 3.35938 3.39622 3.92684 4.00252 4.41000 4.43774 4.60833 4.75583 4.94706 5.10892 5.16091 5.19265 5.23158 5.24875 5.26670 5.33595 5.41580 5.52963 5.60119 5.62712 5.70903 5.78555 5.80490 5.88305 5.93329 5.98937 6.01094 6.09191 6.20671 6.23018 6.25106 6.28258 6.38468 6.50919 6.53789 6.65489 6.68858 6.76589 6.91596 6.92275 6.94507 7.24916 7.25364 7.50740 7.64807 7.96961 8.02235 8.22939 8.37823 9.02013 9.59859 11.08461 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012277 B = 0.005324 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.224168 B = 5257.729830 C = 6392.427176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.087 3.913 3 H 0.030 0.970 4 C 0.022 3.978 5 C -0.519 4.519 6 H 0.054 0.946 7 C 0.062 3.938 8 N -0.892 5.892 9 Si 0.884 3.116 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.661 5.661 14 C 0.136 3.864 15 H 0.078 0.922 16 C -0.117 4.117 17 C -0.087 4.087 18 C -0.123 4.123 19 C -0.122 4.122 20 C -0.115 4.115 21 C -0.091 4.091 22 C -0.075 4.075 23 C -0.047 4.047 24 C -0.138 4.138 25 C 0.064 3.936 26 O -0.387 6.387 27 C 0.055 3.945 28 C -0.118 4.118 29 H 0.047 0.953 30 H 0.055 0.945 31 H 0.035 0.965 32 H 0.025 0.975 33 H 0.020 0.980 34 H 0.260 0.740 35 H 0.357 0.643 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.113 0.887 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.048 0.952 45 H 0.088 0.912 46 H 0.090 0.910 47 H 0.046 0.954 48 H 0.075 0.925 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.692 4.410 17.144 17.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.023 4.023 3 H 0.048 0.952 4 C -0.016 4.016 5 C -0.557 4.557 6 H 0.072 0.928 7 C -0.139 4.139 8 N -0.531 5.531 9 Si 0.712 3.288 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.292 5.292 14 C 0.025 3.975 15 H 0.097 0.903 16 C -0.119 4.119 17 C -0.106 4.106 18 C -0.141 4.141 19 C -0.140 4.140 20 C -0.133 4.133 21 C -0.091 4.091 22 C -0.112 4.112 23 C -0.048 4.048 24 C -0.176 4.176 25 C -0.013 4.013 26 O -0.306 6.306 27 C -0.021 4.021 28 C -0.155 4.155 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.043 0.957 33 H 0.038 0.962 34 H 0.070 0.930 35 H 0.178 0.822 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.132 0.868 40 H 0.088 0.912 41 H 0.101 0.899 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.066 0.934 45 H 0.107 0.893 46 H 0.109 0.891 47 H 0.064 0.936 48 H 0.094 0.906 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.484 3.985 17.187 17.817 hybrid contribution 2.407 0.809 -0.741 2.645 sum -0.077 4.794 16.446 17.130 Atomic orbital electron populations 1.21804 0.96726 1.01350 0.99415 1.21642 0.93153 0.96100 0.91359 0.95180 1.19265 0.95465 0.96094 0.90740 1.21177 0.92108 1.34245 1.08172 0.92820 1.24948 0.97927 0.95287 0.95762 1.69964 1.35355 1.35792 1.11980 0.86708 0.86417 0.78507 0.77124 1.20697 1.21305 1.19945 1.60849 1.34323 1.30044 1.03996 1.20981 0.92052 0.92506 0.91946 0.90349 1.21414 0.98557 0.95793 0.96087 1.20684 0.95712 0.95960 0.98259 1.21010 0.94296 1.00538 0.98251 1.20950 0.99394 0.96873 0.96769 1.20519 0.94713 0.97540 1.00556 1.20564 0.94088 0.97196 0.97281 1.21181 0.93471 0.96958 0.99570 1.20641 0.93868 0.96130 0.94174 1.22025 1.01313 0.98629 0.95677 1.22561 0.96858 0.85704 0.96203 1.87897 1.48838 1.31237 1.62590 1.22784 0.96854 0.93378 0.89105 1.21810 1.02118 0.95176 0.96429 0.93405 0.92603 0.94553 0.95696 0.96181 0.93045 0.82160 0.86440 0.86330 0.86453 0.86849 0.91179 0.89938 0.90874 0.91132 0.93376 0.89344 0.89148 0.93607 0.90593 0.89335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 9.40 37.16 0.35 -1.99 16 2 C 0.09 1.72 2.44 -67.71 -0.17 1.55 16 3 H 0.03 0.62 6.81 -51.93 -0.35 0.26 16 4 C 0.02 0.54 4.57 -27.88 -0.13 0.41 16 5 C -0.52 -13.95 8.12 -34.44 -0.28 -14.23 16 6 H 0.05 1.43 7.49 -52.49 -0.39 1.04 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 9 Si 0.88 21.60 29.54 -169.99 -5.02 16.58 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.66 -11.80 4.45 -100.17 -0.45 -12.25 16 14 C 0.14 2.08 2.36 -68.13 -0.16 1.92 16 15 H 0.08 1.22 6.93 -51.93 -0.36 0.86 16 16 C -0.12 -1.87 5.41 -104.14 -0.56 -2.43 16 17 C -0.09 -1.44 9.75 -39.54 -0.39 -1.83 16 18 C -0.12 -1.86 10.05 -39.62 -0.40 -2.26 16 19 C -0.12 -1.70 10.05 -39.62 -0.40 -2.10 16 20 C -0.12 -1.61 10.04 -39.54 -0.40 -2.00 16 21 C -0.09 -1.33 6.15 -104.13 -0.64 -1.97 16 22 C -0.07 -0.95 4.99 -27.15 -0.14 -1.09 16 23 C -0.05 -0.61 0.53 -154.45 -0.08 -0.69 16 24 C -0.14 -1.57 4.80 -26.95 -0.13 -1.70 16 25 C 0.06 0.67 6.66 37.27 0.25 0.91 16 26 O -0.39 -4.84 10.75 -35.23 -0.38 -5.22 16 27 C 0.06 0.63 6.67 37.28 0.25 0.88 16 28 C -0.12 -1.52 4.10 -26.92 -0.11 -1.63 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.04 0.56 7.49 -51.93 -0.39 0.17 16 32 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 35 H 0.36 7.28 6.92 -39.29 -0.27 7.01 16 36 H 0.12 1.95 7.36 -52.48 -0.39 1.56 16 37 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 38 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 40 H 0.07 0.78 6.33 -51.93 -0.33 0.45 16 41 H 0.08 1.08 7.77 -51.93 -0.40 0.68 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.05 0.47 6.65 -51.93 -0.35 0.12 16 45 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 47 H 0.05 0.49 7.63 -51.93 -0.40 0.09 16 48 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 49 H 0.09 1.25 7.33 -51.93 -0.38 0.87 16 LS Contribution 375.34 15.07 5.66 5.66 Total: -1.00 -29.08 375.34 -10.89 -39.97 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -8.22 Total: 7.44 kcal Atomic # 6 Polarization: -23.37 SS G_CDS: -3.22 Total: -26.60 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.29 Total: -37.83 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: -0.38 Total: -5.22 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.08 -10.89 -39.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298582563.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.537 kcal (2) G-P(sol) polarization free energy of solvation -29.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds