Wall clock time and date at job start Tue Mar 31 2020 11:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47311 * 2 1 4 4 C 1.53000 * 109.46724 * 239.99708 * 2 1 3 5 5 C 1.50707 * 109.46940 * 175.00043 * 4 2 1 6 6 H 1.07995 * 119.99656 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00233 * 180.02562 * 5 4 2 8 8 N 1.31524 * 119.99921 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00389 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47101 * 89.99607 * 9 7 5 11 11 H 1.48499 * 109.47303 * 210.00185 * 9 7 5 12 12 H 1.48496 * 109.46831 * 330.00062 * 9 7 5 13 13 N 1.46899 * 109.46976 * 120.00009 * 2 1 3 14 14 C 1.46903 * 111.00134 * 274.99560 * 13 2 1 15 15 H 1.09003 * 110.36242 * 32.82638 * 14 13 2 16 16 C 1.51489 * 110.32180 * 270.64613 * 14 13 2 17 17 C 1.38473 * 130.36729 * 77.55862 * 16 14 13 18 18 C 1.38109 * 120.22044 * 180.02562 * 17 16 14 19 19 C 1.38260 * 119.93034 * 0.02562 * 18 17 16 20 20 C 1.38104 * 119.93976 * 359.96944 * 19 18 17 21 21 C 1.38262 * 109.78489 * 257.55063 * 16 14 13 22 22 C 1.51496 * 109.78465 * 359.94708 * 21 16 14 23 23 C 1.53666 * 105.07846 * 343.63519 * 22 21 16 24 24 C 1.52356 * 110.71721 * 266.84556 * 23 22 21 25 25 C 1.53223 * 109.29477 * 291.91765 * 24 23 22 26 26 O 1.42908 * 109.36368 * 303.70676 * 25 24 23 27 27 C 1.42972 * 114.19007 * 61.70106 * 26 25 24 28 28 C 1.52396 * 110.62198 * 143.63133 * 23 22 21 29 29 H 1.08996 * 109.47348 * 60.00072 * 1 2 3 30 30 H 1.09004 * 109.47334 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47054 * 300.00256 * 1 2 3 32 32 H 1.08993 * 109.47530 * 294.99917 * 4 2 1 33 33 H 1.09006 * 109.47215 * 55.00443 * 4 2 1 34 34 H 0.97000 * 119.99912 * 179.97438 * 8 7 5 35 35 H 1.00899 * 111.00085 * 151.04367 * 13 2 1 36 36 H 1.08007 * 119.89390 * 0.04662 * 17 16 14 37 37 H 1.07998 * 120.03601 * 179.97438 * 18 17 16 38 38 H 1.07999 * 120.02601 * 179.97438 * 19 18 17 39 39 H 1.08002 * 119.89270 * 180.02562 * 20 19 18 40 40 H 1.08996 * 110.31904 * 224.73277 * 22 21 16 41 41 H 1.08998 * 110.31876 * 102.53937 * 22 21 16 42 42 H 1.09001 * 109.49636 * 171.97295 * 24 23 22 43 43 H 1.09001 * 109.52792 * 51.88570 * 24 23 22 44 44 H 1.09002 * 109.49308 * 63.68309 * 25 24 23 45 45 H 1.08996 * 109.49203 * 183.73755 * 25 24 23 46 46 H 1.09001 * 109.49113 * 178.25533 * 27 26 25 47 47 H 1.09003 * 109.52653 * 58.16909 * 27 26 25 48 48 H 1.08993 * 109.51012 * 187.96956 * 28 23 22 49 49 H 1.09001 * 109.51304 * 308.11477 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3128 6 1 4.0789 -0.0863 -0.5393 7 6 4.2303 -1.1928 -2.3583 8 7 3.5762 -1.8371 -3.3000 9 14 6.0920 -1.0616 -2.4367 10 1 6.6998 -2.2149 -1.7255 11 1 6.5294 -1.0687 -3.8558 12 1 6.5267 0.2030 -1.7910 13 7 2.0196 -0.6925 1.1994 14 6 2.0825 0.2226 2.3469 15 1 1.2860 0.9641 2.2848 16 6 3.4338 0.9052 2.4020 17 6 3.9367 1.9600 1.6591 18 6 5.2180 2.4222 1.8871 19 6 6.0022 1.8300 2.8597 20 6 5.5024 0.7779 3.6018 21 6 4.2175 0.3138 3.3755 22 6 3.4471 -0.8067 4.0434 23 6 1.9782 -0.5638 3.6630 24 6 1.2747 0.2644 4.7309 25 6 1.1465 -0.5655 6.0125 26 8 0.4594 -1.7842 5.7210 27 6 1.1308 -2.6244 4.7790 28 6 1.2553 -1.8870 3.4415 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.7516 -1.7715 -1.2056 33 1 1.6053 -0.2618 -2.1370 34 1 4.0605 -2.2433 -4.0358 35 1 2.9172 -1.1205 1.0288 36 1 3.3248 2.4231 0.8991 37 1 5.6074 3.2448 1.3056 38 1 7.0045 2.1899 3.0389 39 1 6.1155 0.3161 4.3616 40 1 3.5709 -0.7587 5.1252 41 1 3.7811 -1.7731 3.6659 42 1 0.2823 0.5452 4.3784 43 1 1.8558 1.1635 4.9362 44 1 2.1398 -0.7917 6.4003 45 1 0.5854 -0.0008 6.7569 46 1 0.5587 -3.5413 4.6371 47 1 2.1247 -2.8698 5.1532 48 1 0.2613 -1.6956 3.0374 49 1 1.8225 -2.4988 2.7400 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298582563.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:36 Heat of formation + Delta-G solvation = -50.219926 kcal Electronic energy + Delta-G solvation = -28114.714479 eV Core-core repulsion = 24618.761633 eV Total energy + Delta-G solvation = -3495.952846 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -42.07154 -39.64244 -38.09633 -36.52862 -34.60651 -32.50703 -32.34520 -32.02111 -30.63641 -29.27019 -27.69238 -26.97373 -25.03809 -24.39547 -23.79827 -22.47281 -21.63490 -21.00243 -19.56598 -18.48851 -17.59590 -17.10692 -16.87150 -16.66597 -16.53768 -16.11513 -15.89877 -15.50143 -15.39400 -15.22757 -14.74841 -14.54004 -14.00079 -13.92145 -13.65347 -13.57555 -13.39470 -13.25354 -13.22604 -12.94763 -12.80249 -12.64010 -12.46333 -12.43803 -12.27653 -12.11019 -11.90539 -11.83783 -11.60965 -11.37768 -11.21241 -11.03027 -10.95976 -10.58038 -10.26605 -9.77426 -9.54661 -9.04685 -8.19599 -6.27878 0.45533 0.49926 1.34732 1.35494 1.45740 2.37953 2.84355 3.07323 3.12576 3.31014 3.42813 3.69143 3.90430 4.04401 4.12685 4.14257 4.21772 4.24021 4.29320 4.34581 4.37524 4.47693 4.59102 4.60393 4.70480 4.71402 4.72892 4.80076 4.82580 4.88504 4.94909 5.00647 5.03327 5.11440 5.15661 5.21087 5.23310 5.30520 5.34365 5.44383 5.52789 5.54193 5.55789 5.61712 5.63653 5.76890 5.85240 6.13864 6.22391 6.38176 6.41341 6.61190 6.87050 7.40340 8.92064 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012277 B = 0.005324 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.224168 B = 5257.729830 C = 6392.427176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.098 3.902 3 H 0.021 0.979 4 C 0.031 3.969 5 C -0.520 4.520 6 H 0.054 0.946 7 C 0.009 3.991 8 N -0.929 5.929 9 Si 0.949 3.051 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.269 1.269 13 N -0.654 5.654 14 C 0.136 3.864 15 H 0.073 0.927 16 C -0.137 4.137 17 C -0.113 4.113 18 C -0.136 4.136 19 C -0.122 4.122 20 C -0.118 4.118 21 C -0.096 4.096 22 C -0.070 4.070 23 C -0.040 4.040 24 C -0.133 4.133 25 C 0.063 3.937 26 O -0.401 6.401 27 C 0.059 3.941 28 C -0.113 4.113 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.057 0.943 32 H -0.002 1.002 33 H -0.008 1.008 34 H 0.261 0.739 35 H 0.341 0.659 36 H 0.103 0.897 37 H 0.131 0.869 38 H 0.146 0.854 39 H 0.142 0.858 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.107 0.893 46 H 0.098 0.902 47 H 0.059 0.941 48 H 0.059 0.941 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.280 4.672 19.814 20.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.012 4.012 3 H 0.039 0.961 4 C -0.007 4.007 5 C -0.558 4.558 6 H 0.072 0.928 7 C -0.189 4.189 8 N -0.570 5.570 9 Si 0.775 3.225 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.194 1.194 13 N -0.284 5.284 14 C 0.026 3.974 15 H 0.091 0.909 16 C -0.138 4.138 17 C -0.132 4.132 18 C -0.154 4.154 19 C -0.140 4.140 20 C -0.136 4.136 21 C -0.097 4.097 22 C -0.106 4.106 23 C -0.041 4.041 24 C -0.171 4.171 25 C -0.014 4.014 26 O -0.320 6.320 27 C -0.017 4.017 28 C -0.151 4.151 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.016 0.984 33 H 0.010 0.990 34 H 0.070 0.930 35 H 0.161 0.839 36 H 0.121 0.879 37 H 0.149 0.851 38 H 0.164 0.836 39 H 0.160 0.840 40 H 0.113 0.887 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.080 0.920 45 H 0.125 0.875 46 H 0.116 0.884 47 H 0.078 0.922 48 H 0.078 0.922 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.084 4.261 19.877 20.358 hybrid contribution 1.959 0.775 -1.577 2.631 sum 0.875 5.036 18.301 19.001 Atomic orbital electron populations 1.21702 0.94631 1.01484 1.00594 1.21405 0.94747 0.94832 0.90223 0.96065 1.19102 0.94741 0.94691 0.92129 1.21434 0.93113 1.33447 1.07839 0.92785 1.25755 1.02513 0.95109 0.95534 1.70087 1.37179 1.36990 1.12735 0.85685 0.80964 0.78694 0.77184 1.19955 1.20985 1.19374 1.60886 1.33180 1.30486 1.03805 1.21064 0.92028 0.92305 0.92025 0.90895 1.21489 0.99012 0.96299 0.97040 1.20784 0.96656 0.96957 0.98780 1.21267 0.93961 1.01178 0.99030 1.21329 1.00422 0.96450 0.95808 1.20906 0.94574 0.97273 1.00861 1.20856 0.94538 0.97397 0.96910 1.21180 0.92591 0.96011 1.00837 1.20603 0.94550 0.95840 0.93121 1.21983 1.00750 0.98710 0.95660 1.22705 0.97870 0.84967 0.95818 1.87889 1.49640 1.31971 1.62528 1.22777 0.97756 0.93268 0.87914 1.21715 1.00855 0.95272 0.97215 0.93192 0.92957 0.92368 0.98356 0.98988 0.92977 0.83911 0.87908 0.85095 0.83620 0.84040 0.88745 0.90272 0.91523 0.90636 0.91997 0.87542 0.88386 0.92230 0.92195 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.43 9.40 71.98 0.68 -3.76 16 2 C 0.10 4.00 2.44 44.92 0.11 4.11 16 3 H 0.02 0.91 6.81 -2.39 -0.02 0.89 16 4 C 0.03 1.59 4.57 29.85 0.14 1.73 16 5 C -0.52 -28.69 8.12 25.60 0.21 -28.49 16 6 H 0.05 2.94 7.49 -2.91 -0.02 2.91 16 7 C 0.01 0.51 5.46 84.65 0.46 0.97 16 8 N -0.93 -56.20 13.29 21.45 0.28 -55.92 16 9 Si 0.95 44.65 29.54 68.60 2.03 46.68 16 10 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 12 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 13 N -0.65 -23.90 4.45 -470.84 -2.10 -25.99 16 14 C 0.14 4.15 2.36 44.65 0.11 4.25 16 15 H 0.07 2.28 6.93 -2.39 -0.02 2.26 16 16 C -0.14 -4.33 5.41 -19.55 -0.11 -4.43 16 17 C -0.11 -3.76 9.75 22.30 0.22 -3.54 16 18 C -0.14 -3.98 10.05 22.24 0.22 -3.76 16 19 C -0.12 -3.09 10.05 22.24 0.22 -2.87 16 20 C -0.12 -2.95 10.04 22.30 0.22 -2.73 16 21 C -0.10 -2.65 6.15 -19.55 -0.12 -2.77 16 22 C -0.07 -1.61 4.99 30.33 0.15 -1.46 16 23 C -0.04 -0.99 0.53 -52.14 -0.03 -1.01 16 24 C -0.13 -2.75 4.80 30.46 0.15 -2.61 16 25 C 0.06 1.12 6.66 72.06 0.48 1.60 16 26 O -0.40 -9.05 10.75 -148.98 -1.60 -10.65 16 27 C 0.06 1.24 6.67 72.06 0.48 1.72 16 28 C -0.11 -2.83 4.10 30.47 0.12 -2.71 16 29 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.06 1.78 7.49 -2.39 -0.02 1.76 16 32 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 33 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 34 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 35 H 0.34 14.30 6.92 -89.69 -0.62 13.68 16 36 H 0.10 3.58 7.36 -2.91 -0.02 3.56 16 37 H 0.13 3.34 8.06 -2.91 -0.02 3.32 16 38 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 39 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 40 H 0.09 1.73 6.33 -2.39 -0.02 1.72 16 41 H 0.08 1.92 7.77 -2.39 -0.02 1.90 16 42 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.06 0.96 6.65 -2.39 -0.02 0.94 16 45 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.06 1.09 7.63 -2.39 -0.02 1.08 16 48 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 49 H 0.07 2.06 7.33 -2.39 -0.02 2.04 16 Total: -1.00 -63.54 375.34 2.63 -60.91 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: 0.31 Total: 30.73 kcal Atomic # 6 Polarization: -49.47 SS G_CDS: 3.72 Total: -45.75 kcal Atomic # 7 Polarization: -80.10 SS G_CDS: -1.81 Total: -81.91 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -1.60 Total: -10.65 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -63.54 2.63 -60.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298582563.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.690 kcal (2) G-P(sol) polarization free energy of solvation -63.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds