Wall clock time and date at job start Tue Mar 31 2020 11:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09009 * 109.47154 * 2 1 4 4 C 1.52996 * 109.47347 * 119.99844 * 2 1 3 5 5 C 1.50702 * 109.47159 * 185.00014 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99985 * 180.27663 * 7 5 4 9 9 Si 1.86800 * 119.99777 * 0.28166 * 7 5 4 10 10 H 1.48498 * 109.47109 * 89.99834 * 9 7 5 11 11 H 1.48507 * 109.46754 * 209.99574 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99405 * 9 7 5 13 13 N 1.46899 * 109.47404 * 240.00466 * 2 1 3 14 14 C 1.46896 * 111.00161 * 84.99487 * 13 2 1 15 15 H 1.08995 * 110.29084 * 324.33177 * 14 13 2 16 16 C 1.51502 * 110.32058 * 86.45749 * 14 13 2 17 17 C 1.38460 * 130.36926 * 282.43009 * 16 14 13 18 18 C 1.38108 * 120.21804 * 180.02562 * 17 16 14 19 19 C 1.38256 * 119.93151 * 359.96641 * 18 17 16 20 20 C 1.38108 * 119.93891 * 0.02562 * 19 18 17 21 21 C 1.38271 * 109.78115 * 102.45176 * 16 14 13 22 22 C 1.51504 * 109.77744 * 0.02562 * 21 16 14 23 23 C 1.53664 * 105.07782 * 16.41049 * 22 21 16 24 24 C 1.52360 * 110.70884 * 93.11879 * 23 22 21 25 25 C 1.53216 * 109.29125 * 68.09301 * 24 23 22 26 26 O 1.42924 * 109.34183 * 56.29553 * 25 24 23 27 27 C 1.42915 * 114.21137 * 298.26602 * 26 25 24 28 28 C 1.52389 * 110.62986 * 216.33322 * 23 22 21 29 29 H 1.09001 * 109.47295 * 60.00152 * 1 2 3 30 30 H 1.09001 * 109.47340 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47483 * 299.99629 * 1 2 3 32 32 H 1.09004 * 109.47066 * 65.00217 * 4 2 1 33 33 H 1.08994 * 109.47405 * 305.00047 * 4 2 1 34 34 H 0.96996 * 119.99730 * 180.02562 * 8 7 5 35 35 H 1.00903 * 110.99474 * 321.04169 * 13 2 1 36 36 H 1.08004 * 119.88962 * 0.02562 * 17 16 14 37 37 H 1.07998 * 120.03357 * 179.97438 * 18 17 16 38 38 H 1.08002 * 120.02788 * 180.02562 * 19 18 17 39 39 H 1.08005 * 119.88959 * 179.97438 * 20 19 18 40 40 H 1.09000 * 110.31999 * 135.31611 * 22 21 16 41 41 H 1.09003 * 110.31533 * 257.41449 * 22 21 16 42 42 H 1.09003 * 109.49658 * 188.03714 * 24 23 22 43 43 H 1.08994 * 109.50106 * 308.14142 * 24 23 22 44 44 H 1.09006 * 109.49379 * 296.34178 * 25 24 23 45 45 H 1.08998 * 109.49781 * 176.25752 * 25 24 23 46 46 H 1.08997 * 109.50168 * 301.87282 * 27 26 25 47 47 H 1.09004 * 109.53380 * 181.77466 * 27 26 25 48 48 H 1.08995 * 109.51184 * 51.87759 * 28 23 22 49 49 H 1.09002 * 109.50846 * 171.96771 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6148 1.3126 6 1 4.0790 -0.0854 0.5395 7 6 4.2300 -1.1881 2.3611 8 7 5.5402 -1.0906 2.4193 9 14 3.3011 -2.1033 3.6986 10 1 3.1759 -3.5346 3.3235 11 1 4.0413 -1.9905 4.9811 12 1 1.9478 -1.5121 3.8545 13 7 2.0197 -0.6924 -1.1995 14 6 2.0824 0.2227 -2.3469 15 1 1.2557 0.9321 -2.3102 16 6 3.4067 0.9584 -2.3613 17 6 3.8437 2.0334 -1.6061 18 6 5.1120 2.5463 -1.7957 19 6 5.9489 1.9846 -2.7420 20 6 5.5149 0.9121 -3.4962 21 6 4.2435 0.3970 -3.3082 22 6 3.5395 -0.7546 -3.9963 23 6 2.0508 -0.5691 -3.6635 24 6 1.3499 0.2291 -4.7557 25 6 1.2952 -0.6075 -6.0382 26 8 0.6472 -1.8516 -5.7645 27 6 1.3202 -2.6633 -4.7998 28 6 1.3736 -1.9192 -3.4612 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.7517 -1.7715 1.2056 33 1 1.6054 -0.2617 2.1369 34 1 6.0242 -1.4942 3.1566 35 1 1.4496 -1.4979 -1.4100 36 1 3.1907 2.4724 -0.8664 37 1 5.4496 3.3852 -1.2053 38 1 6.9411 2.3841 -2.8913 39 1 6.1692 0.4741 -4.2355 40 1 3.6957 -0.7042 -5.0739 41 1 3.9004 -1.7063 -3.6062 42 1 0.3365 0.4714 -4.4358 43 1 1.9022 1.1496 -4.9449 44 1 2.3085 -0.7956 -6.3932 45 1 0.7364 -0.0666 -6.8018 46 1 2.3343 -2.8698 -5.1420 47 1 0.7806 -3.6019 -4.6731 48 1 1.9418 -2.5071 -2.7404 49 1 0.3608 -1.7663 -3.0884 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298582570.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:48 Heat of formation + Delta-G solvation = -19.862871 kcal Electronic energy + Delta-G solvation = -28093.652938 eV Core-core repulsion = 24599.016472 eV Total energy + Delta-G solvation = -3494.636466 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.02919 -38.60372 -36.87585 -35.26665 -32.44127 -31.47423 -31.22346 -31.01880 -29.47603 -27.70073 -26.59566 -25.77523 -23.77700 -22.96402 -22.51452 -21.31996 -20.26938 -19.53417 -18.62512 -16.55360 -16.40618 -16.10433 -15.93897 -15.61247 -14.98617 -14.89717 -14.52139 -14.40155 -14.11690 -13.68426 -13.45541 -13.23502 -12.76065 -12.69128 -12.55105 -12.36071 -12.28370 -12.07505 -11.83479 -11.66586 -11.61912 -11.39398 -11.26460 -10.95513 -10.76059 -10.67128 -10.54858 -10.38505 -10.22867 -10.05355 -9.75971 -9.54338 -9.44188 -8.97137 -8.37194 -8.32248 -8.11614 -7.61366 -5.84384 -3.77626 1.83427 1.87772 3.38438 3.45906 3.48075 3.79419 4.17492 4.35344 4.55621 4.59009 4.63731 4.85872 5.01709 5.06952 5.14055 5.16377 5.24803 5.38446 5.42961 5.46655 5.50528 5.56404 5.57018 5.62305 5.65347 5.66777 5.78098 5.83673 5.86770 5.91099 5.94675 6.02338 6.03217 6.10894 6.19635 6.28089 6.37117 6.44257 6.49335 6.60803 6.82376 6.87141 6.97762 7.10776 7.13448 7.19600 7.32735 7.46566 7.81841 7.94643 8.09336 8.79447 9.30454 9.78806 11.29591 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012112 B = 0.005251 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.151239 B = 5330.678653 C = 6562.834939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.097 3.903 3 H 0.070 0.930 4 C -0.003 4.003 5 C -0.483 4.483 6 H 0.080 0.920 7 C 0.060 3.940 8 N -0.908 5.908 9 Si 0.871 3.129 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.270 1.270 13 N -0.653 5.653 14 C 0.137 3.863 15 H 0.044 0.956 16 C -0.064 4.064 17 C -0.086 4.086 18 C -0.118 4.118 19 C -0.121 4.121 20 C -0.114 4.114 21 C -0.088 4.088 22 C -0.065 4.065 23 C -0.058 4.058 24 C -0.139 4.139 25 C 0.062 3.938 26 O -0.386 6.386 27 C 0.063 3.937 28 C -0.148 4.148 29 H 0.040 0.960 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.009 0.991 33 H 0.015 0.985 34 H 0.257 0.743 35 H 0.336 0.664 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.111 0.889 40 H 0.067 0.933 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.052 0.948 45 H 0.091 0.909 46 H 0.052 0.948 47 H 0.093 0.907 48 H 0.094 0.906 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.468 3.007 -16.501 18.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.012 4.012 3 H 0.088 0.912 4 C -0.040 4.040 5 C -0.522 4.522 6 H 0.098 0.902 7 C -0.139 4.139 8 N -0.549 5.549 9 Si 0.700 3.300 10 H -0.207 1.207 11 H -0.218 1.218 12 H -0.195 1.195 13 N -0.286 5.286 14 C 0.027 3.973 15 H 0.062 0.938 16 C -0.065 4.065 17 C -0.104 4.104 18 C -0.136 4.136 19 C -0.139 4.139 20 C -0.132 4.132 21 C -0.088 4.088 22 C -0.102 4.102 23 C -0.058 4.058 24 C -0.177 4.177 25 C -0.014 4.014 26 O -0.305 6.305 27 C -0.014 4.014 28 C -0.186 4.186 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.028 0.972 33 H 0.033 0.967 34 H 0.067 0.933 35 H 0.158 0.842 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.130 0.870 40 H 0.085 0.915 41 H 0.103 0.897 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.070 0.930 45 H 0.109 0.891 46 H 0.071 0.929 47 H 0.111 0.889 48 H 0.112 0.888 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.846 2.956 -16.301 17.925 hybrid contribution -0.887 -0.346 1.086 1.444 sum -7.733 2.610 -15.215 17.266 Atomic orbital electron populations 1.22609 0.99556 1.01202 1.00914 1.21611 0.89497 0.98497 0.91621 0.91195 1.19594 0.98052 0.94934 0.91462 1.21061 0.89359 1.33576 1.08184 0.90155 1.25004 0.94627 0.96441 0.97779 1.69923 1.06397 1.46462 1.32117 0.86931 0.80363 0.80661 0.82087 1.20715 1.21814 1.19453 1.60592 1.58020 1.08226 1.01769 1.20764 0.93473 0.92955 0.90061 0.93778 1.20324 0.96233 0.94549 0.95418 1.20561 0.96135 0.96012 0.97701 1.20938 0.93955 1.00527 0.98210 1.20895 0.99157 0.96960 0.96888 1.20445 0.94911 0.97209 1.00666 1.20386 0.94106 0.96454 0.97867 1.21033 0.92659 0.97414 0.99067 1.20750 0.95132 0.95170 0.94773 1.22040 1.01199 0.99021 0.95416 1.22607 0.97610 0.84879 0.96350 1.87895 1.51357 1.30409 1.60798 1.22620 0.97364 0.93604 0.87778 1.22161 1.01545 0.96252 0.98668 0.94042 0.93077 0.92447 0.97238 0.96725 0.93267 0.84159 0.86811 0.86424 0.86562 0.87044 0.91479 0.89724 0.91072 0.90583 0.92994 0.89113 0.92942 0.88891 0.88784 0.91055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.86 9.15 37.15 0.34 -2.52 16 2 C 0.10 1.86 2.38 -67.72 -0.16 1.70 16 3 H 0.07 1.41 6.44 -51.92 -0.33 1.07 16 4 C 0.00 -0.06 3.72 -27.88 -0.10 -0.17 16 5 C -0.48 -13.71 9.39 -34.44 -0.32 -14.03 16 6 H 0.08 2.51 7.99 -52.49 -0.42 2.09 16 7 C 0.06 1.79 5.47 -17.82 -0.10 1.69 16 8 N -0.91 -28.62 13.96 55.43 0.77 -27.85 16 9 Si 0.87 22.17 27.47 -169.99 -4.67 17.50 16 10 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 12 H -0.27 -6.58 6.54 56.52 0.37 -6.21 16 13 N -0.65 -11.62 5.55 -100.17 -0.56 -12.18 16 14 C 0.14 2.12 2.42 -68.12 -0.16 1.95 16 15 H 0.04 0.67 6.93 -51.93 -0.36 0.31 16 16 C -0.06 -1.11 5.64 -104.13 -0.59 -1.69 16 17 C -0.09 -1.52 9.61 -39.55 -0.38 -1.90 16 18 C -0.12 -1.96 10.05 -39.62 -0.40 -2.36 16 19 C -0.12 -1.87 10.05 -39.62 -0.40 -2.27 16 20 C -0.11 -1.76 10.04 -39.55 -0.40 -2.16 16 21 C -0.09 -1.40 6.15 -104.13 -0.64 -2.04 16 22 C -0.06 -0.87 4.98 -27.14 -0.14 -1.00 16 23 C -0.06 -0.73 0.53 -154.45 -0.08 -0.81 16 24 C -0.14 -1.50 4.81 -26.95 -0.13 -1.63 16 25 C 0.06 0.61 6.66 37.27 0.25 0.86 16 26 O -0.39 -4.48 10.75 -35.23 -0.38 -4.86 16 27 C 0.06 0.66 6.67 37.28 0.25 0.91 16 28 C -0.15 -1.74 3.49 -26.92 -0.09 -1.83 16 29 H 0.04 0.57 7.45 -51.93 -0.39 0.18 16 30 H 0.05 0.76 8.13 -51.93 -0.42 0.34 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.01 0.22 7.58 -51.93 -0.39 -0.17 16 33 H 0.01 0.35 7.19 -51.93 -0.37 -0.02 16 34 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 35 H 0.34 5.41 5.19 -39.29 -0.20 5.21 16 36 H 0.11 1.98 7.20 -52.48 -0.38 1.60 16 37 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 39 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 40 H 0.07 0.76 6.33 -51.93 -0.33 0.43 16 41 H 0.08 1.21 7.78 -51.93 -0.40 0.81 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.05 0.48 6.65 -51.93 -0.35 0.14 16 45 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.05 0.52 7.63 -51.93 -0.40 0.12 16 47 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.09 1.20 6.77 -51.93 -0.35 0.85 16 49 H 0.07 0.83 7.88 -51.93 -0.41 0.42 16 LS Contribution 370.00 15.07 5.58 5.58 Total: -1.00 -32.39 370.00 -10.57 -42.95 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -8.06 Total: 6.17 kcal Atomic # 6 Polarization: -24.05 SS G_CDS: -3.25 Total: -27.31 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: 0.22 Total: -40.03 kcal Atomic # 8 Polarization: -4.48 SS G_CDS: -0.38 Total: -4.86 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.67 Total: 17.50 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.39 -10.57 -42.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298582570.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.091 kcal (2) G-P(sol) polarization free energy of solvation -32.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds