Wall clock time and date at job start Tue Mar 31 2020 11:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09009 * 109.47154 * 2 1 4 4 C 1.52996 * 109.47347 * 119.99844 * 2 1 3 5 5 C 1.50702 * 109.47159 * 185.00014 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99985 * 180.27663 * 7 5 4 9 9 Si 1.86800 * 119.99777 * 0.28166 * 7 5 4 10 10 H 1.48498 * 109.47109 * 89.99834 * 9 7 5 11 11 H 1.48507 * 109.46754 * 209.99574 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99405 * 9 7 5 13 13 N 1.46899 * 109.47404 * 240.00466 * 2 1 3 14 14 C 1.46896 * 111.00161 * 84.99487 * 13 2 1 15 15 H 1.08995 * 110.29084 * 324.33177 * 14 13 2 16 16 C 1.51502 * 110.32058 * 86.45749 * 14 13 2 17 17 C 1.38460 * 130.36926 * 282.43009 * 16 14 13 18 18 C 1.38108 * 120.21804 * 180.02562 * 17 16 14 19 19 C 1.38256 * 119.93151 * 359.96641 * 18 17 16 20 20 C 1.38108 * 119.93891 * 0.02562 * 19 18 17 21 21 C 1.38271 * 109.78115 * 102.45176 * 16 14 13 22 22 C 1.51504 * 109.77744 * 0.02562 * 21 16 14 23 23 C 1.53664 * 105.07782 * 16.41049 * 22 21 16 24 24 C 1.52360 * 110.70884 * 93.11879 * 23 22 21 25 25 C 1.53216 * 109.29125 * 68.09301 * 24 23 22 26 26 O 1.42924 * 109.34183 * 56.29553 * 25 24 23 27 27 C 1.42915 * 114.21137 * 298.26602 * 26 25 24 28 28 C 1.52389 * 110.62986 * 216.33322 * 23 22 21 29 29 H 1.09001 * 109.47295 * 60.00152 * 1 2 3 30 30 H 1.09001 * 109.47340 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47483 * 299.99629 * 1 2 3 32 32 H 1.09004 * 109.47066 * 65.00217 * 4 2 1 33 33 H 1.08994 * 109.47405 * 305.00047 * 4 2 1 34 34 H 0.96996 * 119.99730 * 180.02562 * 8 7 5 35 35 H 1.00903 * 110.99474 * 321.04169 * 13 2 1 36 36 H 1.08004 * 119.88962 * 0.02562 * 17 16 14 37 37 H 1.07998 * 120.03357 * 179.97438 * 18 17 16 38 38 H 1.08002 * 120.02788 * 180.02562 * 19 18 17 39 39 H 1.08005 * 119.88959 * 179.97438 * 20 19 18 40 40 H 1.09000 * 110.31999 * 135.31611 * 22 21 16 41 41 H 1.09003 * 110.31533 * 257.41449 * 22 21 16 42 42 H 1.09003 * 109.49658 * 188.03714 * 24 23 22 43 43 H 1.08994 * 109.50106 * 308.14142 * 24 23 22 44 44 H 1.09006 * 109.49379 * 296.34178 * 25 24 23 45 45 H 1.08998 * 109.49781 * 176.25752 * 25 24 23 46 46 H 1.08997 * 109.50168 * 301.87282 * 27 26 25 47 47 H 1.09004 * 109.53380 * 181.77466 * 27 26 25 48 48 H 1.08995 * 109.51184 * 51.87759 * 28 23 22 49 49 H 1.09002 * 109.50846 * 171.96771 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6148 1.3126 6 1 4.0790 -0.0854 0.5395 7 6 4.2300 -1.1881 2.3611 8 7 5.5402 -1.0906 2.4193 9 14 3.3011 -2.1033 3.6986 10 1 3.1759 -3.5346 3.3235 11 1 4.0413 -1.9905 4.9811 12 1 1.9478 -1.5121 3.8545 13 7 2.0197 -0.6924 -1.1995 14 6 2.0824 0.2227 -2.3469 15 1 1.2557 0.9321 -2.3102 16 6 3.4067 0.9584 -2.3613 17 6 3.8437 2.0334 -1.6061 18 6 5.1120 2.5463 -1.7957 19 6 5.9489 1.9846 -2.7420 20 6 5.5149 0.9121 -3.4962 21 6 4.2435 0.3970 -3.3082 22 6 3.5395 -0.7546 -3.9963 23 6 2.0508 -0.5691 -3.6635 24 6 1.3499 0.2291 -4.7557 25 6 1.2952 -0.6075 -6.0382 26 8 0.6472 -1.8516 -5.7645 27 6 1.3202 -2.6633 -4.7998 28 6 1.3736 -1.9192 -3.4612 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.7517 -1.7715 1.2056 33 1 1.6054 -0.2617 2.1369 34 1 6.0242 -1.4942 3.1566 35 1 1.4496 -1.4979 -1.4100 36 1 3.1907 2.4724 -0.8664 37 1 5.4496 3.3852 -1.2053 38 1 6.9411 2.3841 -2.8913 39 1 6.1692 0.4741 -4.2355 40 1 3.6957 -0.7042 -5.0739 41 1 3.9004 -1.7063 -3.6062 42 1 0.3365 0.4714 -4.4358 43 1 1.9022 1.1496 -4.9449 44 1 2.3085 -0.7956 -6.3932 45 1 0.7364 -0.0666 -6.8018 46 1 2.3343 -2.8698 -5.1420 47 1 0.7806 -3.6019 -4.6731 48 1 1.9418 -2.5071 -2.7404 49 1 0.3608 -1.7663 -3.0884 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298582570.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:45 Heat of formation + Delta-G solvation = -38.998625 kcal Electronic energy + Delta-G solvation = -28094.482727 eV Core-core repulsion = 24599.016472 eV Total energy + Delta-G solvation = -3495.466254 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -42.12001 -39.62868 -38.21821 -36.52940 -34.52866 -32.51351 -32.47353 -32.09713 -30.96004 -29.39537 -27.68487 -26.94894 -24.82954 -24.39225 -23.86443 -22.56247 -21.59738 -21.04849 -19.63064 -18.72432 -17.51746 -17.11300 -16.94405 -16.79564 -16.31195 -16.16658 -15.90022 -15.48291 -15.42844 -15.10738 -14.87603 -14.51379 -14.24506 -13.97552 -13.87089 -13.74495 -13.53763 -13.42573 -13.23746 -13.00510 -12.84940 -12.56362 -12.44335 -12.28952 -12.20609 -11.93631 -11.72818 -11.68060 -11.62912 -11.45097 -11.32696 -11.14709 -11.04047 -10.64010 -10.34271 -9.62702 -9.38264 -8.98790 -8.12686 -6.10319 0.55875 0.58262 1.36684 1.38106 1.48670 2.43917 2.88249 3.01948 3.19939 3.27845 3.51277 3.55864 3.83814 3.98402 4.10055 4.13379 4.17847 4.20327 4.24517 4.27382 4.31603 4.34765 4.49838 4.54903 4.58449 4.66622 4.74433 4.76602 4.80530 4.84554 4.86582 4.93181 4.97725 5.01640 5.13609 5.15230 5.17703 5.20400 5.25322 5.28039 5.33436 5.44075 5.53904 5.61557 5.68963 5.79294 5.85090 6.21647 6.31921 6.35437 6.55771 6.76606 6.99193 7.49437 9.04645 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012112 B = 0.005251 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.151239 B = 5330.678653 C = 6562.834939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.102 3.898 3 H 0.050 0.950 4 C -0.001 4.001 5 C -0.478 4.478 6 H 0.037 0.963 7 C -0.005 4.005 8 N -0.959 5.959 9 Si 0.942 3.058 10 H -0.273 1.273 11 H -0.292 1.292 12 H -0.249 1.249 13 N -0.671 5.671 14 C 0.141 3.859 15 H 0.046 0.954 16 C -0.087 4.087 17 C -0.113 4.113 18 C -0.137 4.137 19 C -0.127 4.127 20 C -0.123 4.123 21 C -0.100 4.100 22 C -0.060 4.060 23 C -0.049 4.049 24 C -0.133 4.133 25 C 0.062 3.938 26 O -0.398 6.398 27 C 0.065 3.935 28 C -0.144 4.144 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.014 0.986 33 H 0.015 0.985 34 H 0.257 0.743 35 H 0.345 0.655 36 H 0.102 0.898 37 H 0.128 0.872 38 H 0.142 0.858 39 H 0.138 0.862 40 H 0.092 0.908 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.060 0.940 45 H 0.109 0.891 46 H 0.058 0.942 47 H 0.107 0.893 48 H 0.081 0.919 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.343 1.961 -17.856 20.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.008 4.008 3 H 0.069 0.931 4 C -0.039 4.039 5 C -0.516 4.516 6 H 0.055 0.945 7 C -0.199 4.199 8 N -0.602 5.602 9 Si 0.767 3.233 10 H -0.199 1.199 11 H -0.219 1.219 12 H -0.173 1.173 13 N -0.306 5.306 14 C 0.031 3.969 15 H 0.064 0.936 16 C -0.088 4.088 17 C -0.132 4.132 18 C -0.155 4.155 19 C -0.145 4.145 20 C -0.141 4.141 21 C -0.100 4.100 22 C -0.097 4.097 23 C -0.050 4.050 24 C -0.171 4.171 25 C -0.014 4.014 26 O -0.317 6.317 27 C -0.011 4.011 28 C -0.182 4.182 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.032 0.968 33 H 0.034 0.966 34 H 0.066 0.934 35 H 0.169 0.831 36 H 0.121 0.879 37 H 0.146 0.854 38 H 0.160 0.840 39 H 0.156 0.844 40 H 0.110 0.890 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.094 0.906 44 H 0.079 0.921 45 H 0.127 0.873 46 H 0.077 0.923 47 H 0.125 0.875 48 H 0.099 0.901 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.753 1.913 -17.672 19.814 hybrid contribution -0.203 0.061 1.466 1.482 sum -8.956 1.974 -16.206 18.621 Atomic orbital electron populations 1.22450 0.96175 1.02348 1.02132 1.21357 0.92074 0.96793 0.90544 0.93122 1.19552 0.94716 0.95699 0.93894 1.21276 0.91879 1.31899 1.06562 0.94494 1.25910 0.95430 0.97848 1.00697 1.70101 1.08442 1.48378 1.33318 0.85794 0.79659 0.79405 0.78459 1.19861 1.21890 1.17285 1.60418 1.58690 1.09179 1.02299 1.20796 0.92650 0.92810 0.90633 0.93622 1.20653 0.97616 0.94678 0.95808 1.20721 0.96891 0.97211 0.98372 1.21211 0.93976 1.01268 0.99051 1.21263 1.00078 0.96936 0.96265 1.20857 0.95187 0.97013 1.00995 1.20819 0.94390 0.97063 0.97755 1.21055 0.92766 0.95634 1.00232 1.20728 0.95030 0.95559 0.93663 1.21999 1.00870 0.98910 0.95321 1.22723 0.98445 0.84266 0.95986 1.87891 1.51945 1.30980 1.60840 1.22661 0.98002 0.93772 0.86693 1.22103 1.01200 0.95574 0.99358 0.92114 0.91899 0.91988 0.96773 0.96632 0.93382 0.83101 0.87947 0.85425 0.83997 0.84392 0.88964 0.90799 0.90999 0.90616 0.92139 0.87278 0.92324 0.87508 0.90099 0.90803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.00 9.15 71.98 0.66 -4.34 16 2 C 0.10 3.90 2.38 44.91 0.11 4.00 16 3 H 0.05 2.11 6.44 -2.38 -0.02 2.10 16 4 C 0.00 -0.04 3.72 29.85 0.11 0.07 16 5 C -0.48 -27.83 9.39 25.60 0.24 -27.59 16 6 H 0.04 2.43 7.99 -2.91 -0.02 2.41 16 7 C 0.00 -0.28 5.47 84.66 0.46 0.18 16 8 N -0.96 -62.40 13.96 21.45 0.30 -62.10 16 9 Si 0.94 45.89 27.47 68.60 1.88 47.77 16 10 H -0.27 -12.89 7.11 99.48 0.71 -12.19 16 11 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 12 H -0.25 -11.21 6.54 99.48 0.65 -10.56 16 13 N -0.67 -23.89 5.55 -470.84 -2.61 -26.50 16 14 C 0.14 4.32 2.42 44.65 0.11 4.43 16 15 H 0.05 1.37 6.93 -2.39 -0.02 1.36 16 16 C -0.09 -3.07 5.64 -19.55 -0.11 -3.18 16 17 C -0.11 -4.28 9.61 22.29 0.21 -4.07 16 18 C -0.14 -4.76 10.05 22.24 0.22 -4.54 16 19 C -0.13 -3.97 10.05 22.24 0.22 -3.74 16 20 C -0.12 -3.73 10.04 22.29 0.22 -3.50 16 21 C -0.10 -3.19 6.15 -19.55 -0.12 -3.31 16 22 C -0.06 -1.54 4.98 30.33 0.15 -1.39 16 23 C -0.05 -1.17 0.53 -52.14 -0.03 -1.20 16 24 C -0.13 -2.60 4.81 30.45 0.15 -2.46 16 25 C 0.06 1.04 6.66 72.05 0.48 1.52 16 26 O -0.40 -8.06 10.75 -148.98 -1.60 -9.66 16 27 C 0.07 1.20 6.67 72.06 0.48 1.68 16 28 C -0.14 -3.13 3.49 30.47 0.11 -3.02 16 29 H 0.06 1.54 7.45 -2.39 -0.02 1.52 16 30 H 0.06 1.69 8.13 -2.39 -0.02 1.67 16 31 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.01 0.65 7.58 -2.38 -0.02 0.63 16 33 H 0.02 0.72 7.19 -2.39 -0.02 0.71 16 34 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 35 H 0.35 10.82 5.19 -89.69 -0.47 10.36 16 36 H 0.10 3.91 7.20 -2.91 -0.02 3.89 16 37 H 0.13 3.96 8.06 -2.91 -0.02 3.93 16 38 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 39 H 0.14 3.35 8.06 -2.91 -0.02 3.32 16 40 H 0.09 1.87 6.33 -2.39 -0.02 1.85 16 41 H 0.07 2.06 7.78 -2.39 -0.02 2.04 16 42 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.06 0.92 6.65 -2.38 -0.02 0.90 16 45 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.06 1.01 7.63 -2.39 -0.02 0.99 16 47 H 0.11 1.66 8.14 -2.38 -0.02 1.64 16 48 H 0.08 1.98 6.77 -2.39 -0.02 1.96 16 49 H 0.07 1.56 7.88 -2.39 -0.02 1.54 16 Total: -1.00 -71.83 370.00 2.06 -69.77 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: 0.41 Total: 31.16 kcal Atomic # 6 Polarization: -54.12 SS G_CDS: 3.68 Total: -50.44 kcal Atomic # 7 Polarization: -86.29 SS G_CDS: -2.31 Total: -88.61 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: -1.60 Total: -9.66 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.88 Total: 47.77 kcal Total: -71.83 2.06 -69.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298582570.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.772 kcal (2) G-P(sol) polarization free energy of solvation -71.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds