Wall clock time and date at job start Tue Mar 31 2020 11:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35912 * 116.99533 * 2 1 4 4 C 1.38851 * 119.98604 * 0.02562 * 3 2 1 5 5 C 1.38237 * 120.22704 * 180.02562 * 4 3 2 6 6 C 1.38019 * 120.20116 * 0.02562 * 5 4 3 7 7 C 1.39536 * 119.97076 * 359.97438 * 6 5 4 8 8 C 1.47813 * 120.11699 * 180.02562 * 7 6 5 9 9 C 1.32566 * 120.00213 * 34.80685 * 8 7 6 10 10 C 1.51429 * 121.11479 * 188.13203 * 9 8 7 11 11 C 1.53301 * 108.24547 * 229.04898 * 10 9 8 12 12 N 1.46831 * 109.39798 * 306.21009 * 11 10 9 13 13 C 1.46899 * 110.99877 * 189.75158 * 12 11 10 14 14 H 1.08999 * 109.47062 * 54.99792 * 13 12 11 15 15 C 1.52996 * 109.47096 * 294.99932 * 13 12 11 16 16 C 1.52998 * 109.46919 * 174.99759 * 13 12 11 17 17 C 1.50694 * 109.47363 * 294.99631 * 16 13 12 18 18 H 1.08007 * 120.00018 * 0.02562 * 17 16 13 19 19 C 1.37875 * 120.00323 * 179.72452 * 17 16 13 20 20 N 1.31519 * 119.99826 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00478 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46836 * 59.99687 * 21 19 17 23 23 H 1.48495 * 109.47270 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46834 * 300.00187 * 21 19 17 25 25 C 1.46827 * 111.56512 * 65.38406 * 12 11 10 26 26 C 1.51439 * 121.10558 * 8.15389 * 9 8 7 27 27 C 1.38459 * 119.98049 * 180.28216 * 3 2 1 28 28 H 1.08999 * 109.47275 * 299.99622 * 1 2 3 29 29 H 1.08997 * 109.47717 * 59.99962 * 1 2 3 30 30 H 1.09002 * 109.47255 * 180.02562 * 1 2 3 31 31 H 1.07999 * 119.88908 * 0.02562 * 4 3 2 32 32 H 1.08001 * 119.89825 * 179.97438 * 5 4 3 33 33 H 1.08003 * 120.01603 * 179.97438 * 6 5 4 34 34 H 1.08000 * 120.00370 * 214.80722 * 8 7 6 35 35 H 1.08998 * 109.71013 * 109.36397 * 10 9 8 36 36 H 1.08997 * 109.70987 * 348.73760 * 10 9 8 37 37 H 1.08997 * 109.48467 * 186.23286 * 11 10 9 38 38 H 1.09000 * 109.49444 * 66.19355 * 11 10 9 39 39 H 1.09002 * 109.47734 * 59.99814 * 15 13 12 40 40 H 1.08998 * 109.47599 * 180.02562 * 15 13 12 41 41 H 1.08999 * 109.47051 * 299.99866 * 15 13 12 42 42 H 1.09009 * 109.47159 * 175.00186 * 16 13 12 43 43 H 1.09005 * 109.47422 * 55.00141 * 16 13 12 44 44 H 0.97000 * 119.99704 * 180.02562 * 20 19 17 45 45 H 1.08994 * 109.48408 * 54.59345 * 25 12 11 46 46 H 1.09002 * 109.47927 * 174.64011 * 25 12 11 47 47 H 1.08998 * 109.70745 * 250.63681 * 26 9 8 48 48 H 1.08998 * 109.71277 * 11.26896 * 26 9 8 49 49 H 1.08000 * 120.10412 * 359.97148 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2893 2.3753 0.0005 5 6 1.9116 3.6097 0.0000 6 6 3.2893 3.6927 -0.0016 7 6 4.0578 2.5280 -0.0021 8 6 5.5335 2.6131 -0.0033 9 6 6.1415 3.5923 0.6515 10 6 7.6339 3.8128 0.5203 11 6 8.2250 3.9459 1.9284 12 7 7.5019 4.9907 2.6642 13 6 8.1799 5.3100 3.9277 14 1 9.2166 5.5793 3.7257 15 6 8.1403 4.0900 4.8501 16 6 7.4704 6.4844 4.6045 17 6 7.6155 7.7181 3.7514 18 1 8.1591 7.6694 2.8194 19 6 7.0491 8.9077 4.1576 20 7 6.3825 8.9659 5.2899 21 14 7.2283 10.4370 3.0998 22 1 6.6250 10.1894 1.7656 23 1 6.5346 11.5754 3.7539 24 1 8.6684 10.7617 2.9392 25 6 6.1019 4.6151 2.8985 26 6 5.3667 4.5276 1.5562 27 6 3.4286 1.2831 -0.0059 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 0.2109 2.3163 0.0014 32 1 1.3179 4.5119 0.0000 33 1 3.7724 4.6586 -0.0024 34 1 6.1164 1.8775 -0.5376 35 1 7.8223 4.7254 -0.0452 36 1 8.0875 2.9632 0.0100 37 1 9.2788 4.2150 1.8564 38 1 8.1275 2.9965 2.4551 39 1 8.6458 3.2532 4.3680 40 1 8.6430 4.3270 5.7878 41 1 7.1036 3.8207 5.0521 42 1 7.9173 6.6643 5.5823 43 1 6.4130 6.2490 4.7261 44 1 5.9837 9.8027 5.5755 45 1 6.0639 3.6470 3.3977 46 1 5.6240 5.3672 3.5263 47 1 5.3119 5.5168 1.1018 48 1 4.3608 4.1381 1.7128 49 1 4.0182 0.3783 -0.0101 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298631320.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:28 Heat of formation + Delta-G solvation = 2.851838 kcal Electronic energy + Delta-G solvation = -26345.222821 eV Core-core repulsion = 22851.571339 eV Total energy + Delta-G solvation = -3493.651482 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -40.27589 -39.06609 -37.69275 -35.33233 -32.89816 -31.77707 -31.10652 -30.40238 -29.30184 -27.60064 -27.29942 -26.42893 -23.52326 -23.31306 -22.39121 -22.11711 -20.79294 -19.17071 -18.34941 -17.10335 -16.29699 -16.22047 -16.10652 -15.91966 -15.28647 -14.80686 -14.61607 -14.33307 -14.02953 -13.83095 -13.74679 -13.51863 -13.08745 -12.77281 -12.69561 -12.54055 -12.13026 -12.01156 -11.82725 -11.67097 -11.59127 -11.39559 -11.20474 -11.07325 -10.97682 -10.85345 -10.60243 -10.41566 -10.20600 -10.07868 -9.80088 -9.58255 -9.12543 -8.96497 -8.39885 -8.24408 -7.98235 -7.42163 -5.88226 -3.86068 0.98616 1.41093 2.44743 3.09838 3.41005 3.44885 3.48396 3.79934 4.55058 4.58796 4.65207 4.70130 4.88272 4.88920 4.95381 5.02492 5.17043 5.20680 5.26771 5.40597 5.46696 5.48571 5.53365 5.70641 5.71059 5.77889 5.84924 5.86747 5.91870 6.01453 6.04100 6.05946 6.19510 6.20480 6.26390 6.37981 6.40912 6.46334 6.51723 6.60922 6.68797 6.73556 6.83578 6.97839 7.02901 7.27181 7.56530 7.71159 7.94809 8.04960 8.13735 8.58731 9.19836 9.75614 11.23662 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014805 B = 0.003119 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.856807 B = 8974.185806 C = 9761.463384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.122 3.878 4 C -0.215 4.215 5 C -0.081 4.081 6 C -0.148 4.148 7 C 0.002 3.998 8 C -0.162 4.162 9 C -0.069 4.069 10 C -0.082 4.082 11 C 0.056 3.944 12 N -0.513 5.513 13 C 0.087 3.913 14 H 0.070 0.930 15 C -0.184 4.184 16 C 0.028 3.972 17 C -0.490 4.490 18 H 0.060 0.940 19 C 0.051 3.949 20 N -0.904 5.904 21 Si 0.889 3.111 22 H -0.278 1.278 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.060 3.940 26 C -0.096 4.096 27 C -0.149 4.149 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.097 0.903 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.134 0.866 34 H 0.118 0.882 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.026 0.974 39 H 0.040 0.960 40 H 0.055 0.945 41 H 0.050 0.950 42 H 0.018 0.982 43 H 0.021 0.979 44 H 0.258 0.742 45 H 0.022 0.978 46 H 0.095 0.905 47 H 0.086 0.914 48 H 0.080 0.920 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.918 -16.549 -11.059 21.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.077 3.923 4 C -0.234 4.234 5 C -0.099 4.099 6 C -0.166 4.166 7 C 0.002 3.998 8 C -0.180 4.180 9 C -0.069 4.069 10 C -0.119 4.119 11 C -0.072 4.072 12 N -0.236 5.236 13 C -0.020 4.020 14 H 0.088 0.912 15 C -0.243 4.243 16 C -0.009 4.009 17 C -0.529 4.529 18 H 0.078 0.922 19 C -0.149 4.149 20 N -0.545 5.545 21 Si 0.718 3.282 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.205 1.205 25 C -0.068 4.068 26 C -0.133 4.133 27 C -0.168 4.168 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.116 0.884 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.152 0.848 34 H 0.136 0.864 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.044 0.956 39 H 0.059 0.941 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.036 0.964 43 H 0.039 0.961 44 H 0.067 0.933 45 H 0.040 0.960 46 H 0.113 0.887 47 H 0.104 0.896 48 H 0.098 0.902 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.931 -16.193 -11.231 21.243 hybrid contribution -0.267 0.238 0.001 0.358 sum -8.198 -15.955 -11.231 21.163 Atomic orbital electron populations 1.23019 0.78625 1.03696 1.01330 1.86058 1.21206 1.27174 1.89019 1.18900 0.92210 0.84026 0.97125 1.21215 0.99757 0.92459 1.09962 1.20896 0.94645 0.96912 0.97413 1.21508 0.93553 0.98649 1.02933 1.18781 0.93265 0.91825 0.95960 1.21226 0.91362 1.00524 1.04896 1.22532 0.96157 0.94262 0.93997 1.20910 0.91298 1.02056 0.97654 1.22079 0.98094 0.93621 0.93452 1.61863 1.01252 1.39043 1.21458 1.21905 0.98540 0.94767 0.86826 0.91212 1.22528 1.01276 0.99518 1.00966 1.19253 0.95448 0.91134 0.95094 1.21133 1.32642 0.93213 1.05870 0.92161 1.25004 0.95841 0.98858 0.95151 1.69956 1.36505 1.26374 1.21665 0.86704 0.78038 0.82800 0.80668 1.20362 1.21709 1.20526 1.22136 0.89767 0.99083 0.95835 1.21357 0.97984 0.99000 0.94960 1.20464 0.91121 0.98025 1.07161 0.92679 0.92766 0.88437 0.85838 0.85690 0.84825 0.86378 0.89487 0.91497 0.91091 0.95554 0.94140 0.92599 0.93046 0.96379 0.96117 0.93279 0.95981 0.88655 0.89576 0.90179 0.85415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.61 10.49 -19.46 -0.20 -3.81 16 3 C 0.12 1.49 6.68 -39.27 -0.26 1.23 16 4 C -0.22 -2.38 9.03 -39.35 -0.36 -2.74 16 5 C -0.08 -0.92 10.03 -39.66 -0.40 -1.32 16 6 C -0.15 -1.88 7.38 -39.18 -0.29 -2.17 16 7 C 0.00 0.02 5.27 -105.03 -0.55 -0.53 16 8 C -0.16 -2.06 9.47 -37.57 -0.36 -2.42 16 9 C -0.07 -0.96 5.33 -100.53 -0.54 -1.50 16 10 C -0.08 -1.09 6.21 -27.37 -0.17 -1.26 16 11 C 0.06 0.85 4.95 -3.71 -0.02 0.83 16 12 N -0.51 -9.53 4.27 -226.39 -0.97 -10.50 16 13 C 0.09 1.76 2.29 -67.72 -0.16 1.61 16 14 H 0.07 1.43 8.04 -51.93 -0.42 1.01 16 15 C -0.18 -3.19 8.53 37.16 0.32 -2.87 16 16 C 0.03 0.69 4.27 -27.89 -0.12 0.57 16 17 C -0.49 -13.51 8.84 -34.44 -0.30 -13.82 16 18 H 0.06 1.66 7.74 -52.48 -0.41 1.26 16 19 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 20 N -0.90 -27.00 13.29 55.43 0.74 -26.27 16 21 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 C 0.06 1.07 4.61 -3.71 -0.02 1.05 16 26 C -0.10 -1.49 4.39 -27.36 -0.12 -1.61 16 27 C -0.15 -1.88 9.72 -39.04 -0.38 -2.26 16 28 H 0.05 0.35 7.66 -51.93 -0.40 -0.04 16 29 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 30 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.12 1.07 6.28 -52.49 -0.33 0.74 16 32 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.13 1.68 5.97 -52.48 -0.31 1.37 16 34 H 0.12 1.31 7.96 -52.49 -0.42 0.90 16 35 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.07 0.74 7.94 -51.93 -0.41 0.33 16 37 H 0.07 1.04 8.00 -51.93 -0.42 0.62 16 38 H 0.03 0.40 6.90 -51.93 -0.36 0.04 16 39 H 0.04 0.62 6.75 -51.93 -0.35 0.27 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.05 0.90 6.62 -51.93 -0.34 0.56 16 42 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 43 H 0.02 0.55 5.97 -51.93 -0.31 0.24 16 44 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.02 0.39 6.82 -51.93 -0.35 0.03 16 46 H 0.10 1.98 5.76 -51.93 -0.30 1.68 16 47 H 0.09 1.42 7.85 -51.93 -0.41 1.01 16 48 H 0.08 1.18 5.11 -51.93 -0.27 0.92 16 49 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 LS Contribution 377.19 15.07 5.68 5.68 Total: -1.00 -30.59 377.19 -10.46 -41.05 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -7.87 Total: 1.64 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: -2.82 Total: -24.66 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: -0.23 Total: -36.76 kcal Atomic # 8 Polarization: -3.61 SS G_CDS: -0.20 Total: -3.81 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.59 -10.46 -41.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298631320.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.902 kcal (2) G-P(sol) polarization free energy of solvation -30.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds