Wall clock time and date at job start Tue Mar 31 2020 11:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35912 * 116.99533 * 2 1 4 4 C 1.38851 * 119.98604 * 0.02562 * 3 2 1 5 5 C 1.38237 * 120.22704 * 180.02562 * 4 3 2 6 6 C 1.38019 * 120.20116 * 0.02562 * 5 4 3 7 7 C 1.39536 * 119.97076 * 359.97438 * 6 5 4 8 8 C 1.47813 * 120.11699 * 180.02562 * 7 6 5 9 9 C 1.32566 * 120.00213 * 34.80685 * 8 7 6 10 10 C 1.51429 * 121.11479 * 188.13203 * 9 8 7 11 11 C 1.53301 * 108.24547 * 229.04898 * 10 9 8 12 12 N 1.46831 * 109.39798 * 306.21009 * 11 10 9 13 13 C 1.46899 * 110.99877 * 189.75158 * 12 11 10 14 14 H 1.08999 * 109.47062 * 54.99792 * 13 12 11 15 15 C 1.52996 * 109.47096 * 294.99932 * 13 12 11 16 16 C 1.52998 * 109.46919 * 174.99759 * 13 12 11 17 17 C 1.50694 * 109.47363 * 294.99631 * 16 13 12 18 18 H 1.08007 * 120.00018 * 0.02562 * 17 16 13 19 19 C 1.37875 * 120.00323 * 179.72452 * 17 16 13 20 20 N 1.31519 * 119.99826 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00478 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46836 * 59.99687 * 21 19 17 23 23 H 1.48495 * 109.47270 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46834 * 300.00187 * 21 19 17 25 25 C 1.46827 * 111.56512 * 65.38406 * 12 11 10 26 26 C 1.51439 * 121.10558 * 8.15389 * 9 8 7 27 27 C 1.38459 * 119.98049 * 180.28216 * 3 2 1 28 28 H 1.08999 * 109.47275 * 299.99622 * 1 2 3 29 29 H 1.08997 * 109.47717 * 59.99962 * 1 2 3 30 30 H 1.09002 * 109.47255 * 180.02562 * 1 2 3 31 31 H 1.07999 * 119.88908 * 0.02562 * 4 3 2 32 32 H 1.08001 * 119.89825 * 179.97438 * 5 4 3 33 33 H 1.08003 * 120.01603 * 179.97438 * 6 5 4 34 34 H 1.08000 * 120.00370 * 214.80722 * 8 7 6 35 35 H 1.08998 * 109.71013 * 109.36397 * 10 9 8 36 36 H 1.08997 * 109.70987 * 348.73760 * 10 9 8 37 37 H 1.08997 * 109.48467 * 186.23286 * 11 10 9 38 38 H 1.09000 * 109.49444 * 66.19355 * 11 10 9 39 39 H 1.09002 * 109.47734 * 59.99814 * 15 13 12 40 40 H 1.08998 * 109.47599 * 180.02562 * 15 13 12 41 41 H 1.08999 * 109.47051 * 299.99866 * 15 13 12 42 42 H 1.09009 * 109.47159 * 175.00186 * 16 13 12 43 43 H 1.09005 * 109.47422 * 55.00141 * 16 13 12 44 44 H 0.97000 * 119.99704 * 180.02562 * 20 19 17 45 45 H 1.08994 * 109.48408 * 54.59345 * 25 12 11 46 46 H 1.09002 * 109.47927 * 174.64011 * 25 12 11 47 47 H 1.08998 * 109.70745 * 250.63681 * 26 9 8 48 48 H 1.08998 * 109.71277 * 11.26896 * 26 9 8 49 49 H 1.08000 * 120.10412 * 359.97148 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2893 2.3753 0.0005 5 6 1.9116 3.6097 0.0000 6 6 3.2893 3.6927 -0.0016 7 6 4.0578 2.5280 -0.0021 8 6 5.5335 2.6131 -0.0033 9 6 6.1415 3.5923 0.6515 10 6 7.6339 3.8128 0.5203 11 6 8.2250 3.9459 1.9284 12 7 7.5019 4.9907 2.6642 13 6 8.1799 5.3100 3.9277 14 1 9.2166 5.5793 3.7257 15 6 8.1403 4.0900 4.8501 16 6 7.4704 6.4844 4.6045 17 6 7.6155 7.7181 3.7514 18 1 8.1591 7.6694 2.8194 19 6 7.0491 8.9077 4.1576 20 7 6.3825 8.9659 5.2899 21 14 7.2283 10.4370 3.0998 22 1 6.6250 10.1894 1.7656 23 1 6.5346 11.5754 3.7539 24 1 8.6684 10.7617 2.9392 25 6 6.1019 4.6151 2.8985 26 6 5.3667 4.5276 1.5562 27 6 3.4286 1.2831 -0.0059 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 0.2109 2.3163 0.0014 32 1 1.3179 4.5119 0.0000 33 1 3.7724 4.6586 -0.0024 34 1 6.1164 1.8775 -0.5376 35 1 7.8223 4.7254 -0.0452 36 1 8.0875 2.9632 0.0100 37 1 9.2788 4.2150 1.8564 38 1 8.1275 2.9965 2.4551 39 1 8.6458 3.2532 4.3680 40 1 8.6430 4.3270 5.7878 41 1 7.1036 3.8207 5.0521 42 1 7.9173 6.6643 5.5823 43 1 6.4130 6.2490 4.7261 44 1 5.9837 9.8027 5.5755 45 1 6.0639 3.6470 3.3977 46 1 5.6240 5.3672 3.5263 47 1 5.3119 5.5168 1.1018 48 1 4.3608 4.1381 1.7128 49 1 4.0182 0.3783 -0.0101 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298631320.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:24 Heat of formation + Delta-G solvation = -13.251793 kcal Electronic energy + Delta-G solvation = -26345.921127 eV Core-core repulsion = 22851.571339 eV Total energy + Delta-G solvation = -3494.349788 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 4.20 seconds Orbital eigenvalues (eV) -41.16383 -40.30643 -38.68938 -36.60406 -34.77659 -33.13951 -32.20095 -31.57843 -30.48265 -29.14117 -28.33083 -27.49640 -25.22652 -24.65912 -23.63292 -23.13213 -21.92681 -20.59570 -19.41189 -18.34311 -18.08104 -17.31348 -17.10181 -16.63947 -16.56834 -16.47191 -15.81395 -15.71962 -15.37101 -14.91412 -14.80916 -14.60692 -14.41807 -14.14792 -13.82410 -13.69602 -13.50163 -13.40164 -13.06168 -12.93533 -12.90582 -12.69507 -12.59831 -12.42745 -12.35970 -12.15897 -11.94713 -11.83654 -11.79755 -11.47296 -11.20864 -11.07478 -10.89572 -10.53295 -10.43931 -9.33372 -9.00077 -8.79889 -8.07912 -6.12533 0.03964 0.49217 1.43038 1.45427 1.45676 1.52897 2.37473 2.48865 2.87144 3.14693 3.29995 3.70326 3.86496 3.91410 4.03819 4.18387 4.22028 4.27822 4.30515 4.36702 4.39502 4.39929 4.44789 4.49383 4.55180 4.59707 4.65187 4.72017 4.73570 4.77220 4.88058 4.96466 5.02149 5.03477 5.08811 5.18683 5.19841 5.22048 5.29684 5.32506 5.46659 5.49382 5.52904 5.70540 5.74038 5.83536 5.92280 5.98041 6.35860 6.46073 6.48959 6.58757 7.01130 7.53168 9.03963 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014805 B = 0.003119 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.856807 B = 8974.185806 C = 9761.463384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.337 6.337 3 C 0.114 3.886 4 C -0.214 4.214 5 C -0.086 4.086 6 C -0.162 4.162 7 C -0.015 4.015 8 C -0.141 4.141 9 C -0.088 4.088 10 C -0.074 4.074 11 C 0.056 3.944 12 N -0.530 5.530 13 C 0.095 3.905 14 H 0.067 0.933 15 C -0.173 4.173 16 C 0.033 3.967 17 C -0.497 4.497 18 H 0.058 0.942 19 C -0.005 4.005 20 N -0.941 5.941 21 Si 0.955 3.045 22 H -0.271 1.271 23 H -0.289 1.289 24 H -0.270 1.270 25 C 0.067 3.933 26 C -0.086 4.086 27 C -0.160 4.160 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.119 0.881 31 H 0.148 0.852 32 H 0.143 0.857 33 H 0.128 0.872 34 H 0.140 0.860 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.035 0.965 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.044 0.956 42 H -0.010 1.010 43 H -0.001 1.001 44 H 0.258 0.742 45 H 0.027 0.973 46 H 0.055 0.945 47 H 0.068 0.932 48 H 0.084 0.916 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.119 -18.059 -13.037 23.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.251 6.251 3 C 0.069 3.931 4 C -0.232 4.232 5 C -0.104 4.104 6 C -0.181 4.181 7 C -0.015 4.015 8 C -0.159 4.159 9 C -0.089 4.089 10 C -0.111 4.111 11 C -0.072 4.072 12 N -0.254 5.254 13 C -0.013 4.013 14 H 0.085 0.915 15 C -0.232 4.232 16 C -0.004 4.004 17 C -0.535 4.535 18 H 0.077 0.923 19 C -0.200 4.200 20 N -0.583 5.583 21 Si 0.781 3.219 22 H -0.196 1.196 23 H -0.215 1.215 24 H -0.195 1.195 25 C -0.061 4.061 26 C -0.123 4.123 27 C -0.179 4.179 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.137 0.863 31 H 0.165 0.835 32 H 0.160 0.840 33 H 0.145 0.855 34 H 0.158 0.842 35 H 0.097 0.903 36 H 0.116 0.884 37 H 0.096 0.904 38 H 0.053 0.947 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.008 0.992 43 H 0.017 0.983 44 H 0.067 0.933 45 H 0.045 0.955 46 H 0.074 0.926 47 H 0.087 0.913 48 H 0.102 0.898 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.128 -17.718 -13.223 23.555 hybrid contribution -0.334 0.621 0.608 0.931 sum -8.462 -17.097 -12.615 22.870 Atomic orbital electron populations 1.23325 0.76555 1.05509 1.02176 1.86040 1.23399 1.26781 1.88852 1.19074 0.92385 0.84791 0.96897 1.21500 1.01050 0.91882 1.08775 1.21164 0.94425 0.97976 0.96867 1.21584 0.94340 0.98434 1.03696 1.18900 0.93569 0.92120 0.96887 1.21436 0.91421 0.99732 1.03268 1.22372 0.96410 0.94850 0.95223 1.20882 0.90839 1.03033 0.96395 1.22173 0.98153 0.92702 0.94151 1.61781 1.01614 1.41290 1.20715 1.21613 0.97539 0.94116 0.88062 0.91470 1.22388 1.01277 0.98982 1.00567 1.19111 0.94484 0.92793 0.93981 1.21440 1.31976 0.94268 1.05840 0.92336 1.25840 0.95646 1.02174 0.96384 1.70093 1.37662 1.27122 1.23421 0.85653 0.78363 0.78881 0.79015 1.19621 1.21474 1.19549 1.21981 0.89646 0.97744 0.96757 1.21197 0.98254 0.98869 0.93973 1.20621 0.91778 0.98121 1.07343 0.92020 0.91639 0.86314 0.83455 0.83951 0.85455 0.84192 0.90270 0.88378 0.90358 0.94709 0.91500 0.92503 0.93657 0.99185 0.98306 0.93334 0.95520 0.92633 0.91326 0.89776 0.84699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.34 -6.95 10.49 -92.56 -0.97 -7.92 16 3 C 0.11 2.59 6.68 22.47 0.15 2.74 16 4 C -0.21 -4.33 9.03 22.42 0.20 -4.13 16 5 C -0.09 -1.87 10.03 22.22 0.22 -1.65 16 6 C -0.16 -4.02 7.38 22.53 0.17 -3.85 16 7 C -0.01 -0.36 5.27 -20.13 -0.11 -0.47 16 8 C -0.14 -3.29 9.47 23.65 0.22 -3.07 16 9 C -0.09 -2.33 5.33 -17.13 -0.09 -2.42 16 10 C -0.07 -1.82 6.21 30.18 0.19 -1.63 16 11 C 0.06 1.60 4.95 86.42 0.43 2.03 16 12 N -0.53 -19.75 4.27 -870.17 -3.72 -23.47 16 13 C 0.09 3.87 2.29 44.91 0.10 3.98 16 14 H 0.07 2.76 8.04 -2.39 -0.02 2.74 16 15 C -0.17 -5.94 8.53 71.98 0.61 -5.32 16 16 C 0.03 1.74 4.27 29.85 0.13 1.87 16 17 C -0.50 -28.15 8.84 25.60 0.23 -27.92 16 18 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 19 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 20 N -0.94 -57.92 13.29 21.45 0.28 -57.64 16 21 Si 0.95 45.48 29.54 68.60 2.03 47.51 16 22 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 23 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 24 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 25 C 0.07 2.46 4.61 86.42 0.40 2.86 16 26 C -0.09 -2.70 4.39 30.18 0.13 -2.57 16 27 C -0.16 -3.82 9.72 22.62 0.22 -3.60 16 28 H 0.06 0.65 7.66 -2.39 -0.02 0.63 16 29 H 0.07 0.62 7.66 -2.39 -0.02 0.61 16 30 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.15 2.17 6.28 -2.91 -0.02 2.15 16 32 H 0.14 2.48 8.06 -2.91 -0.02 2.45 16 33 H 0.13 3.24 5.97 -2.91 -0.02 3.22 16 34 H 0.14 2.64 7.96 -2.91 -0.02 2.62 16 35 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.10 1.81 7.94 -2.39 -0.02 1.79 16 37 H 0.08 2.13 8.00 -2.39 -0.02 2.11 16 38 H 0.03 0.95 6.90 -2.39 -0.02 0.93 16 39 H 0.07 1.94 6.75 -2.39 -0.02 1.92 16 40 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.04 1.59 6.62 -2.39 -0.02 1.57 16 42 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 43 H 0.00 -0.07 5.97 -2.38 -0.01 -0.08 16 44 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 45 H 0.03 0.94 6.82 -2.39 -0.02 0.93 16 46 H 0.06 2.46 5.76 -2.39 -0.01 2.45 16 47 H 0.07 2.35 7.85 -2.39 -0.02 2.33 16 48 H 0.08 2.53 5.11 -2.39 -0.01 2.52 16 49 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -67.31 377.19 3.33 -63.99 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 0.93 Total: 19.16 kcal Atomic # 6 Polarization: -46.40 SS G_CDS: 4.78 Total: -41.62 kcal Atomic # 7 Polarization: -77.68 SS G_CDS: -3.43 Total: -81.11 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: -0.97 Total: -7.92 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -67.31 3.33 -63.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298631320.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.734 kcal (2) G-P(sol) polarization free energy of solvation -67.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.20 seconds