Wall clock time and date at job start Tue Mar 31 2020 11:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34773 * 120.00167 * 2 1 4 4 O 1.21550 * 119.99545 * 174.08233 * 3 2 1 5 5 C 1.47877 * 120.00184 * 354.07696 * 3 2 1 6 6 C 1.39924 * 120.02873 * 145.04434 * 5 3 2 7 7 C 1.38325 * 120.36230 * 180.02562 * 6 5 3 8 8 C 1.37751 * 120.41129 * 359.97438 * 7 6 5 9 9 C 1.40754 * 120.03813 * 359.76324 * 8 7 6 10 10 C 1.41439 * 120.17598 * 180.25211 * 9 8 7 11 11 H 1.07996 * 120.00126 * 214.98456 * 10 9 8 12 12 C 1.39946 * 119.99841 * 34.98975 * 10 9 8 13 13 N 1.30825 * 119.99928 * 5.16321 * 12 10 9 14 14 Si 1.86798 * 119.99884 * 185.17021 * 12 10 9 15 15 H 1.48506 * 109.47276 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47202 * 119.99453 * 14 12 10 17 17 H 1.48498 * 109.47124 * 240.00055 * 14 12 10 18 18 C 1.38998 * 120.02485 * 325.06565 * 5 3 2 19 19 C 1.46500 * 119.99589 * 180.02562 * 2 1 3 20 20 C 1.53016 * 109.47279 * 59.99830 * 19 2 1 21 21 C 1.52995 * 109.46202 * 164.04586 * 20 19 2 22 22 C 1.52988 * 109.50795 * 315.98933 * 21 20 19 23 23 C 1.53009 * 109.46960 * 112.93709 * 22 21 20 24 24 C 1.53006 * 109.42808 * 284.03965 * 23 22 21 25 25 C 1.52980 * 109.48483 * 75.96514 * 24 23 22 26 26 C 1.53001 * 109.50721 * 247.06217 * 25 24 23 27 27 H 1.08993 * 109.47470 * 94.77006 * 1 2 3 28 28 H 1.09000 * 109.47376 * 214.77631 * 1 2 3 29 29 H 1.09007 * 109.46719 * 334.77013 * 1 2 3 30 30 H 1.08000 * 119.81426 * 0.02562 * 6 5 3 31 31 H 1.07998 * 119.79342 * 180.02562 * 7 6 5 32 32 H 1.07994 * 119.98097 * 180.02562 * 8 7 6 33 33 H 0.96994 * 119.99886 * 179.97438 * 13 12 10 34 34 H 1.07998 * 120.20491 * 359.97438 * 18 5 3 35 35 H 1.09005 * 109.47001 * 179.97438 * 19 2 1 36 36 H 1.08996 * 109.47321 * 284.04096 * 20 19 2 37 37 H 1.09002 * 109.47078 * 44.04855 * 20 19 2 38 38 H 1.08994 * 109.46075 * 195.97654 * 21 20 19 39 39 H 1.09000 * 109.45633 * 75.99622 * 21 20 19 40 40 H 1.09001 * 109.47128 * 352.93186 * 22 21 20 41 41 H 1.08997 * 109.46744 * 232.93703 * 22 21 20 42 42 H 1.08998 * 109.47145 * 164.05476 * 23 22 21 43 43 H 1.08995 * 109.48375 * 44.02994 * 23 22 21 44 44 H 1.08993 * 109.47029 * 315.96019 * 24 23 22 45 45 H 1.09003 * 109.46294 * 195.96584 * 24 23 22 46 46 H 1.09003 * 109.46602 * 127.05155 * 25 24 23 47 47 H 1.09002 * 109.45983 * 7.06783 * 25 24 23 48 48 H 1.09008 * 109.46858 * 284.01932 * 26 25 24 49 49 H 1.08994 * 109.47658 * 164.01043 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3495 1.1698 0.1085 5 6 1.4055 2.4444 -0.1322 6 6 1.8538 3.5828 0.5469 7 6 1.1728 4.7810 0.4286 8 6 0.0460 4.8678 -0.3591 9 6 -0.4168 3.7347 -1.0541 10 6 -1.5704 3.8219 -1.8679 11 1 -2.2451 2.9818 -1.9401 12 6 -1.8373 4.9969 -2.5796 13 7 -0.9706 5.9768 -2.5732 14 14 -3.4313 5.1662 -3.5387 15 1 -4.2349 3.9267 -3.3861 16 1 -4.2021 6.3235 -3.0175 17 1 -3.1241 5.3826 -4.9753 18 6 0.2700 2.5151 -0.9307 19 6 2.1974 -1.2688 -0.0006 20 6 1.8276 -2.0706 -1.2503 21 6 2.8558 -3.1831 -1.4648 22 6 4.2642 -2.6254 -1.2504 23 6 4.8796 -3.2605 -0.0018 24 6 4.2642 -2.6267 1.2475 25 6 2.8559 -3.1845 1.4617 26 6 1.8277 -2.0717 1.2484 27 1 -0.3634 -0.0854 -1.0240 28 1 -0.3634 -0.8441 0.5861 29 1 -0.3633 0.9297 0.4381 30 1 2.7364 3.5255 1.1667 31 1 1.5271 5.6540 0.9565 32 1 -0.4801 5.8069 -0.4468 33 1 -1.1554 6.7911 -3.0668 34 1 -0.0797 1.6390 -1.4567 35 1 3.2691 -1.0696 -0.0009 36 1 0.8387 -2.5100 -1.1206 37 1 1.8210 -1.4098 -2.1171 38 1 2.7682 -3.5675 -2.4809 39 1 2.6723 -3.9891 -0.7544 40 1 4.2110 -1.5445 -1.1198 41 1 4.8824 -2.8565 -2.1179 42 1 5.9565 -3.0923 -0.0017 43 1 4.6789 -4.3318 -0.0023 44 1 4.2110 -1.5458 1.1179 45 1 4.8826 -2.8587 2.1147 46 1 2.7684 -3.5699 2.4776 47 1 2.6722 -3.9898 0.7505 48 1 1.8214 -1.4117 2.1159 49 1 0.8386 -2.5108 1.1186 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299474712.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:23 Heat of formation + Delta-G solvation = -19.520980 kcal Electronic energy + Delta-G solvation = -27213.222276 eV Core-core repulsion = 23718.600636 eV Total energy + Delta-G solvation = -3494.621640 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 4.23 seconds Orbital eigenvalues (eV) -40.33592 -38.60118 -36.97104 -35.19207 -33.60917 -32.90316 -32.05571 -29.92907 -29.59387 -26.94118 -25.99121 -25.83160 -25.27812 -22.53927 -21.56235 -20.89703 -20.77048 -19.69512 -18.69926 -17.32821 -16.59800 -15.96261 -15.50487 -14.93267 -14.82240 -14.66866 -14.44742 -14.22493 -14.17948 -13.68647 -13.34837 -13.24544 -12.87688 -12.76280 -12.64919 -12.26598 -11.96822 -11.81979 -11.68412 -11.55844 -11.34000 -11.27254 -11.22621 -11.14476 -11.09965 -10.82092 -10.59601 -10.50475 -10.44577 -10.21241 -9.90687 -9.78855 -9.52632 -9.29197 -9.04758 -8.25902 -7.60963 -7.40598 -6.72419 -4.46652 2.25487 2.72389 3.06479 3.09386 3.11586 3.41546 3.69980 3.92817 4.50662 4.63940 4.78030 4.78787 4.94603 5.05995 5.13931 5.14526 5.19672 5.28537 5.41074 5.48817 5.55133 5.60328 5.66963 5.79090 5.80700 5.85962 5.89225 5.93384 5.99689 6.06518 6.09654 6.15369 6.18363 6.20327 6.24588 6.30205 6.36875 6.48411 6.55631 6.75178 6.89419 6.92328 7.03726 7.20156 7.36407 7.60810 7.78355 7.92128 7.95593 8.10100 8.50642 8.77205 8.81293 8.84759 10.24472 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.020506 B = 0.003311 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.143534 B = 8454.950057 C = 9097.898216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.612 5.612 3 C 0.568 3.432 4 O -0.557 6.557 5 C -0.121 4.121 6 C -0.168 4.168 7 C -0.120 4.120 8 C -0.124 4.124 9 C 0.101 3.899 10 C -0.471 4.471 11 H 0.077 0.923 12 C 0.073 3.927 13 N -0.812 5.812 14 Si 0.912 3.088 15 H -0.262 1.262 16 H -0.274 1.274 17 H -0.275 1.275 18 C -0.181 4.181 19 C 0.118 3.882 20 C -0.128 4.128 21 C -0.122 4.122 22 C -0.135 4.135 23 C -0.116 4.116 24 C -0.136 4.136 25 C -0.122 4.122 26 C -0.127 4.127 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.121 0.879 33 H 0.279 0.721 34 H 0.107 0.893 35 H 0.125 0.875 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.080 0.920 45 H 0.057 0.943 46 H 0.058 0.942 47 H 0.073 0.927 48 H 0.065 0.935 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.196 -15.459 4.118 16.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.345 5.345 3 C 0.360 3.640 4 O -0.436 6.436 5 C -0.124 4.124 6 C -0.188 4.188 7 C -0.138 4.138 8 C -0.144 4.144 9 C 0.099 3.901 10 C -0.502 4.502 11 H 0.096 0.904 12 C -0.142 4.142 13 N -0.439 5.439 14 Si 0.737 3.263 15 H -0.186 1.186 16 H -0.199 1.199 17 H -0.201 1.201 18 C -0.201 4.201 19 C 0.016 3.984 20 C -0.167 4.167 21 C -0.160 4.160 22 C -0.173 4.173 23 C -0.153 4.153 24 C -0.173 4.173 25 C -0.160 4.160 26 C -0.166 4.166 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.108 0.892 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.138 0.862 33 H 0.090 0.910 34 H 0.125 0.875 35 H 0.142 0.858 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.098 0.902 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.091 0.909 48 H 0.083 0.917 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.848 -15.222 4.070 16.220 hybrid contribution -0.832 0.253 -0.643 1.082 sum 3.015 -14.970 3.427 15.650 Atomic orbital electron populations 1.22062 0.79684 1.03380 1.01489 1.47811 1.06991 1.05337 1.74329 1.18967 0.86869 0.83990 0.74201 1.90643 1.14482 1.87568 1.50890 1.19308 0.97759 0.92067 1.03275 1.20457 1.01205 0.92358 1.04817 1.20708 0.96949 0.95891 1.00283 1.21577 0.96926 1.00073 0.95810 1.17561 0.92279 0.90358 0.89937 1.19492 1.07066 0.99483 1.24138 0.90440 1.25830 0.97402 0.94898 0.96113 1.69750 1.33564 1.05287 1.35270 0.86203 0.81624 0.79203 0.79295 1.18568 1.19911 1.20067 1.21511 0.95692 0.99404 1.03518 1.21718 0.99919 0.82878 0.93933 1.21983 0.98960 0.97501 0.98216 1.21803 0.94536 0.98159 1.01472 1.21886 0.95941 1.01775 0.97652 1.21680 0.99551 0.99452 0.94660 1.21888 0.95872 1.01896 0.97615 1.21803 0.94577 0.98169 1.01415 1.21968 0.98928 0.97493 0.98163 0.92639 0.92452 0.89230 0.88422 0.88574 0.86157 0.91031 0.87479 0.85791 0.91822 0.91534 0.92207 0.90906 0.90350 0.92320 0.92305 0.92061 0.90201 0.92381 0.92276 0.90875 0.91652 0.91852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.13 8.22 59.85 0.49 1.62 16 2 N -0.61 -10.22 2.76 -175.02 -0.48 -10.71 16 3 C 0.57 11.84 7.36 -12.32 -0.09 11.75 16 4 O -0.56 -12.79 16.16 5.32 0.09 -12.71 16 5 C -0.12 -2.73 5.16 -105.04 -0.54 -3.27 16 6 C -0.17 -3.85 9.61 -38.92 -0.37 -4.22 16 7 C -0.12 -2.74 10.01 -39.73 -0.40 -3.14 16 8 C -0.12 -3.09 8.62 -38.81 -0.33 -3.43 16 9 C 0.10 2.54 5.49 -106.87 -0.59 1.95 16 10 C -0.47 -11.86 9.04 -37.72 -0.34 -12.20 16 11 H 0.08 1.85 7.85 -52.49 -0.41 1.44 16 12 C 0.07 1.78 5.31 -17.34 -0.09 1.69 16 13 N -0.81 -20.68 10.99 55.55 0.61 -20.07 16 14 Si 0.91 18.32 29.56 -169.99 -5.03 13.29 16 15 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 16 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 17 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 18 C -0.18 -4.16 7.34 -38.44 -0.28 -4.44 16 19 C 0.12 1.64 1.92 -67.92 -0.13 1.51 16 20 C -0.13 -1.54 4.80 -26.73 -0.13 -1.67 16 21 C -0.12 -1.23 5.48 -26.74 -0.15 -1.38 16 22 C -0.14 -1.48 5.47 -26.73 -0.15 -1.62 16 23 C -0.12 -1.13 5.59 -26.72 -0.15 -1.27 16 24 C -0.14 -1.45 5.47 -26.74 -0.15 -1.59 16 25 C -0.12 -1.19 5.48 -26.74 -0.15 -1.34 16 26 C -0.13 -1.48 4.58 -26.73 -0.12 -1.60 16 27 H 0.06 0.80 7.03 -51.93 -0.37 0.43 16 28 H 0.06 0.69 6.84 -51.93 -0.36 0.33 16 29 H 0.09 1.48 5.76 -51.93 -0.30 1.19 16 30 H 0.10 2.14 7.99 -52.49 -0.42 1.72 16 31 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 32 H 0.12 3.09 6.50 -52.49 -0.34 2.75 16 33 H 0.28 6.51 8.30 -40.82 -0.34 6.18 16 34 H 0.11 2.26 5.49 -52.49 -0.29 1.98 16 35 H 0.12 1.92 1.60 -51.93 -0.08 1.84 16 36 H 0.06 0.69 7.82 -51.93 -0.41 0.29 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.65 4.69 -51.93 -0.24 0.41 16 40 H 0.08 1.07 5.47 -51.93 -0.28 0.79 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.52 7.47 -51.93 -0.39 0.13 16 44 H 0.08 1.07 5.47 -51.93 -0.28 0.79 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.07 0.64 4.69 -51.93 -0.24 0.40 16 48 H 0.06 0.85 8.14 -51.92 -0.42 0.42 16 49 H 0.06 0.66 7.13 -51.93 -0.37 0.29 16 LS Contribution 360.92 15.07 5.44 5.44 Total: -1.00 -27.90 360.92 -10.34 -38.24 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -7.30 Total: 9.17 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: -3.67 Total: -22.65 kcal Atomic # 7 Polarization: -30.91 SS G_CDS: 0.13 Total: -30.78 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.09 Total: -12.71 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -27.90 -10.34 -38.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299474712.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.717 kcal (2) G-P(sol) polarization free energy of solvation -27.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.24 seconds