Wall clock time and date at job start Tue Mar 31 2020 11:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34773 * 120.00167 * 2 1 4 4 O 1.21550 * 119.99545 * 174.08233 * 3 2 1 5 5 C 1.47877 * 120.00184 * 354.07696 * 3 2 1 6 6 C 1.39924 * 120.02873 * 145.04434 * 5 3 2 7 7 C 1.38325 * 120.36230 * 180.02562 * 6 5 3 8 8 C 1.37751 * 120.41129 * 359.97438 * 7 6 5 9 9 C 1.40754 * 120.03813 * 359.76324 * 8 7 6 10 10 C 1.41439 * 120.17598 * 180.25211 * 9 8 7 11 11 H 1.07996 * 120.00126 * 214.98456 * 10 9 8 12 12 C 1.39946 * 119.99841 * 34.98975 * 10 9 8 13 13 N 1.30825 * 119.99928 * 5.16321 * 12 10 9 14 14 Si 1.86798 * 119.99884 * 185.17021 * 12 10 9 15 15 H 1.48506 * 109.47276 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47202 * 119.99453 * 14 12 10 17 17 H 1.48498 * 109.47124 * 240.00055 * 14 12 10 18 18 C 1.38998 * 120.02485 * 325.06565 * 5 3 2 19 19 C 1.46500 * 119.99589 * 180.02562 * 2 1 3 20 20 C 1.53016 * 109.47279 * 59.99830 * 19 2 1 21 21 C 1.52995 * 109.46202 * 164.04586 * 20 19 2 22 22 C 1.52988 * 109.50795 * 315.98933 * 21 20 19 23 23 C 1.53009 * 109.46960 * 112.93709 * 22 21 20 24 24 C 1.53006 * 109.42808 * 284.03965 * 23 22 21 25 25 C 1.52980 * 109.48483 * 75.96514 * 24 23 22 26 26 C 1.53001 * 109.50721 * 247.06217 * 25 24 23 27 27 H 1.08993 * 109.47470 * 94.77006 * 1 2 3 28 28 H 1.09000 * 109.47376 * 214.77631 * 1 2 3 29 29 H 1.09007 * 109.46719 * 334.77013 * 1 2 3 30 30 H 1.08000 * 119.81426 * 0.02562 * 6 5 3 31 31 H 1.07998 * 119.79342 * 180.02562 * 7 6 5 32 32 H 1.07994 * 119.98097 * 180.02562 * 8 7 6 33 33 H 0.96994 * 119.99886 * 179.97438 * 13 12 10 34 34 H 1.07998 * 120.20491 * 359.97438 * 18 5 3 35 35 H 1.09005 * 109.47001 * 179.97438 * 19 2 1 36 36 H 1.08996 * 109.47321 * 284.04096 * 20 19 2 37 37 H 1.09002 * 109.47078 * 44.04855 * 20 19 2 38 38 H 1.08994 * 109.46075 * 195.97654 * 21 20 19 39 39 H 1.09000 * 109.45633 * 75.99622 * 21 20 19 40 40 H 1.09001 * 109.47128 * 352.93186 * 22 21 20 41 41 H 1.08997 * 109.46744 * 232.93703 * 22 21 20 42 42 H 1.08998 * 109.47145 * 164.05476 * 23 22 21 43 43 H 1.08995 * 109.48375 * 44.02994 * 23 22 21 44 44 H 1.08993 * 109.47029 * 315.96019 * 24 23 22 45 45 H 1.09003 * 109.46294 * 195.96584 * 24 23 22 46 46 H 1.09003 * 109.46602 * 127.05155 * 25 24 23 47 47 H 1.09002 * 109.45983 * 7.06783 * 25 24 23 48 48 H 1.09008 * 109.46858 * 284.01932 * 26 25 24 49 49 H 1.08994 * 109.47658 * 164.01043 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3495 1.1698 0.1085 5 6 1.4055 2.4444 -0.1322 6 6 1.8538 3.5828 0.5469 7 6 1.1728 4.7810 0.4286 8 6 0.0460 4.8678 -0.3591 9 6 -0.4168 3.7347 -1.0541 10 6 -1.5704 3.8219 -1.8679 11 1 -2.2451 2.9818 -1.9401 12 6 -1.8373 4.9969 -2.5796 13 7 -0.9706 5.9768 -2.5732 14 14 -3.4313 5.1662 -3.5387 15 1 -4.2349 3.9267 -3.3861 16 1 -4.2021 6.3235 -3.0175 17 1 -3.1241 5.3826 -4.9753 18 6 0.2700 2.5151 -0.9307 19 6 2.1974 -1.2688 -0.0006 20 6 1.8276 -2.0706 -1.2503 21 6 2.8558 -3.1831 -1.4648 22 6 4.2642 -2.6254 -1.2504 23 6 4.8796 -3.2605 -0.0018 24 6 4.2642 -2.6267 1.2475 25 6 2.8559 -3.1845 1.4617 26 6 1.8277 -2.0717 1.2484 27 1 -0.3634 -0.0854 -1.0240 28 1 -0.3634 -0.8441 0.5861 29 1 -0.3633 0.9297 0.4381 30 1 2.7364 3.5255 1.1667 31 1 1.5271 5.6540 0.9565 32 1 -0.4801 5.8069 -0.4468 33 1 -1.1554 6.7911 -3.0668 34 1 -0.0797 1.6390 -1.4567 35 1 3.2691 -1.0696 -0.0009 36 1 0.8387 -2.5100 -1.1206 37 1 1.8210 -1.4098 -2.1171 38 1 2.7682 -3.5675 -2.4809 39 1 2.6723 -3.9891 -0.7544 40 1 4.2110 -1.5445 -1.1198 41 1 4.8824 -2.8565 -2.1179 42 1 5.9565 -3.0923 -0.0017 43 1 4.6789 -4.3318 -0.0023 44 1 4.2110 -1.5458 1.1179 45 1 4.8826 -2.8587 2.1147 46 1 2.7684 -3.5699 2.4776 47 1 2.6722 -3.9898 0.7505 48 1 1.8214 -1.4117 2.1159 49 1 0.8386 -2.5108 1.1186 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299474712.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:21 Heat of formation + Delta-G solvation = -31.661683 kcal Electronic energy + Delta-G solvation = -27213.748737 eV Core-core repulsion = 23718.600636 eV Total energy + Delta-G solvation = -3495.148101 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -41.63292 -39.93621 -38.69099 -36.53463 -35.45164 -33.74905 -33.21360 -31.79396 -31.23661 -28.17494 -27.15878 -27.00822 -26.88793 -24.04553 -22.68272 -22.57939 -21.65717 -21.20759 -19.84267 -19.00175 -17.98894 -17.50262 -17.12061 -16.57950 -16.23801 -16.02986 -15.61765 -15.15800 -15.11092 -15.01431 -14.91525 -14.49248 -14.22934 -14.17041 -14.02182 -13.64497 -13.57685 -13.11516 -12.94943 -12.86155 -12.77169 -12.56402 -12.38281 -12.24542 -12.20416 -12.18881 -11.99014 -11.93990 -11.70695 -11.35524 -11.32459 -11.10525 -10.84653 -10.72588 -10.60761 -9.64393 -9.43911 -9.27652 -8.56100 -6.39735 0.45151 0.91296 1.42431 1.47340 1.56556 1.94797 2.10159 2.24380 2.80259 3.53773 3.60486 3.86182 3.90852 3.91502 4.11278 4.17308 4.21330 4.27013 4.33905 4.34237 4.37081 4.42935 4.53380 4.64481 4.72974 4.79581 4.90928 4.92249 4.97674 4.98470 5.00763 5.01927 5.10059 5.13006 5.14623 5.21730 5.23422 5.31363 5.33635 5.36232 5.43761 5.49698 5.62675 5.65378 5.70087 5.81115 5.96297 6.04600 6.20892 6.39384 6.61090 6.93241 6.93585 7.19147 8.42777 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.020506 B = 0.003311 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.143534 B = 8454.950057 C = 9097.898216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.602 5.602 3 C 0.561 3.439 4 O -0.587 6.587 5 C -0.126 4.126 6 C -0.180 4.180 7 C -0.117 4.117 8 C -0.147 4.147 9 C 0.076 3.924 10 C -0.497 4.497 11 H 0.084 0.916 12 C 0.030 3.970 13 N -0.846 5.846 14 Si 0.985 3.015 15 H -0.253 1.253 16 H -0.268 1.268 17 H -0.273 1.273 18 C -0.176 4.176 19 C 0.109 3.891 20 C -0.123 4.123 21 C -0.116 4.116 22 C -0.136 4.136 23 C -0.112 4.112 24 C -0.136 4.136 25 C -0.116 4.116 26 C -0.122 4.122 27 H 0.062 0.938 28 H 0.093 0.907 29 H 0.069 0.931 30 H 0.104 0.896 31 H 0.119 0.881 32 H 0.106 0.894 33 H 0.285 0.715 34 H 0.122 0.878 35 H 0.109 0.891 36 H 0.083 0.917 37 H 0.043 0.957 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.043 0.957 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.084 0.916 44 H 0.045 0.955 45 H 0.065 0.935 46 H 0.073 0.927 47 H 0.091 0.909 48 H 0.047 0.953 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.069 -18.334 3.944 18.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.332 5.332 3 C 0.352 3.648 4 O -0.469 6.469 5 C -0.129 4.129 6 C -0.200 4.200 7 C -0.136 4.136 8 C -0.167 4.167 9 C 0.074 3.926 10 C -0.528 4.528 11 H 0.102 0.898 12 C -0.182 4.182 13 N -0.473 5.473 14 Si 0.806 3.194 15 H -0.177 1.177 16 H -0.193 1.193 17 H -0.198 1.198 18 C -0.196 4.196 19 C 0.008 3.992 20 C -0.162 4.162 21 C -0.153 4.153 22 C -0.173 4.173 23 C -0.149 4.149 24 C -0.173 4.173 25 C -0.153 4.153 26 C -0.160 4.160 27 H 0.081 0.919 28 H 0.111 0.889 29 H 0.088 0.912 30 H 0.122 0.878 31 H 0.137 0.863 32 H 0.124 0.876 33 H 0.095 0.905 34 H 0.140 0.860 35 H 0.126 0.874 36 H 0.101 0.899 37 H 0.062 0.938 38 H 0.090 0.910 39 H 0.112 0.888 40 H 0.062 0.938 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.103 0.897 44 H 0.064 0.936 45 H 0.084 0.916 46 H 0.092 0.908 47 H 0.110 0.890 48 H 0.066 0.934 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.707 -18.137 3.909 18.749 hybrid contribution -0.399 1.118 -0.544 1.305 sum 2.309 -17.019 3.365 17.501 Atomic orbital electron populations 1.22156 0.78321 1.03915 1.02411 1.47890 1.07902 1.05223 1.72184 1.18791 0.86479 0.84746 0.74779 1.90624 1.15529 1.88068 1.52714 1.19594 0.97563 0.93151 1.02579 1.20660 1.01516 0.92649 1.05167 1.20914 0.96163 0.96793 0.99685 1.21540 0.98080 0.99715 0.97328 1.17902 0.93086 0.91229 0.90429 1.19788 1.07603 1.00484 1.24908 0.89805 1.26713 1.00584 0.94157 0.96757 1.69832 1.35397 1.05940 1.36152 0.85100 0.77238 0.79460 0.77554 1.17671 1.19295 1.19784 1.21621 0.95511 0.99214 1.03256 1.22017 0.98967 0.81933 0.96299 1.21953 1.00691 0.97484 0.96052 1.21799 0.92995 0.97704 1.02822 1.21865 0.97091 0.99747 0.98635 1.21673 0.99364 1.00477 0.93402 1.21861 0.97097 0.99859 0.98499 1.21797 0.92989 0.97663 1.02874 1.21937 1.00647 0.97483 0.95951 0.91941 0.88862 0.91232 0.87783 0.86289 0.87580 0.90489 0.86024 0.87408 0.89872 0.93847 0.91025 0.88838 0.93798 0.91723 0.92393 0.89709 0.93622 0.91584 0.90786 0.89050 0.93398 0.89820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.09 8.22 127.77 1.05 3.14 16 2 N -0.60 -19.94 2.76 -825.93 -2.28 -22.22 16 3 C 0.56 23.96 7.36 86.80 0.64 24.60 16 4 O -0.59 -28.01 16.16 -3.87 -0.06 -28.08 16 5 C -0.13 -5.81 5.16 -20.13 -0.10 -5.91 16 6 C -0.18 -8.42 9.61 22.70 0.22 -8.20 16 7 C -0.12 -5.49 10.01 22.18 0.22 -5.27 16 8 C -0.15 -7.56 8.62 22.77 0.20 -7.36 16 9 C 0.08 3.90 5.49 -21.32 -0.12 3.79 16 10 C -0.50 -25.40 9.04 23.47 0.21 -25.19 16 11 H 0.08 4.02 7.85 -2.91 -0.02 4.00 16 12 C 0.03 1.48 5.31 85.26 0.45 1.93 16 13 N -0.85 -43.94 10.99 21.83 0.24 -43.70 16 14 Si 0.99 37.34 29.56 68.60 2.03 39.37 16 15 H -0.25 -9.16 7.11 99.48 0.71 -8.45 16 16 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 17 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 18 C -0.18 -8.24 7.34 23.01 0.17 -8.07 16 19 C 0.11 2.94 1.92 45.00 0.09 3.02 16 20 C -0.12 -2.74 4.80 30.60 0.15 -2.59 16 21 C -0.12 -2.02 5.48 30.59 0.17 -1.85 16 22 C -0.14 -2.82 5.47 30.59 0.17 -2.65 16 23 C -0.11 -1.95 5.59 30.60 0.17 -1.78 16 24 C -0.14 -2.72 5.47 30.59 0.17 -2.55 16 25 C -0.12 -1.91 5.48 30.59 0.17 -1.75 16 26 C -0.12 -2.56 4.58 30.60 0.14 -2.42 16 27 H 0.06 1.70 7.03 -2.39 -0.02 1.68 16 28 H 0.09 1.97 6.84 -2.39 -0.02 1.95 16 29 H 0.07 2.28 5.76 -2.38 -0.01 2.27 16 30 H 0.10 4.67 7.99 -2.91 -0.02 4.65 16 31 H 0.12 4.87 8.06 -2.91 -0.02 4.85 16 32 H 0.11 5.69 6.50 -2.91 -0.02 5.67 16 33 H 0.28 13.51 8.30 -92.71 -0.77 12.74 16 34 H 0.12 5.18 5.49 -2.91 -0.02 5.16 16 35 H 0.11 3.40 1.60 -2.38 0.00 3.40 16 36 H 0.08 1.52 7.82 -2.39 -0.02 1.50 16 37 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.09 1.26 4.69 -2.39 -0.01 1.25 16 40 H 0.04 1.23 5.47 -2.39 -0.01 1.22 16 41 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.08 1.11 7.47 -2.39 -0.02 1.09 16 44 H 0.05 1.25 5.47 -2.39 -0.01 1.24 16 45 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.09 1.19 4.69 -2.39 -0.01 1.18 16 48 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 49 H 0.08 1.42 7.13 -2.39 -0.02 1.40 16 Total: -1.00 -62.75 360.92 5.04 -57.71 By element: Atomic # 1 Polarization: 35.07 SS G_CDS: 0.96 Total: 36.03 kcal Atomic # 6 Polarization: -43.26 SS G_CDS: 4.15 Total: -39.11 kcal Atomic # 7 Polarization: -63.88 SS G_CDS: -2.04 Total: -65.92 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -0.06 Total: -28.08 kcal Atomic # 14 Polarization: 37.34 SS G_CDS: 2.03 Total: 39.37 kcal Total: -62.75 5.04 -57.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299474712.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.047 kcal (2) G-P(sol) polarization free energy of solvation -62.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds