Wall clock time and date at job start Tue Mar 31 2020 10:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47198 * 2 1 4 4 C 1.53004 * 109.46825 * 119.99567 * 2 1 3 5 5 C 1.53002 * 109.47218 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.46732 * 299.99970 * 5 4 2 7 7 H 1.09001 * 109.47095 * 299.99521 * 6 5 4 8 8 N 1.46502 * 109.46851 * 180.02562 * 6 5 4 9 9 C 1.34776 * 120.00030 * 85.00181 * 8 6 5 10 10 O 1.21276 * 119.99917 * 359.97438 * 9 8 6 11 11 C 1.50704 * 119.99896 * 180.02562 * 9 8 6 12 12 C 1.52998 * 109.46990 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.47738 * 54.34267 * 12 11 9 14 14 C 1.50702 * 109.46938 * 294.34117 * 12 11 9 15 15 H 1.08004 * 119.99953 * 327.80213 * 14 12 11 16 16 C 1.37874 * 120.00081 * 147.79369 * 14 12 11 17 17 N 1.31513 * 120.00036 * 171.88062 * 16 14 12 18 18 Si 1.86799 * 120.00006 * 351.88298 * 16 14 12 19 19 H 1.48496 * 109.47157 * 271.83495 * 18 16 14 20 20 H 1.48499 * 109.47276 * 31.83596 * 18 16 14 21 21 H 1.48498 * 109.47132 * 151.83605 * 18 16 14 22 22 C 1.50702 * 109.47094 * 174.34808 * 12 11 9 23 23 C 1.38230 * 120.00329 * 62.28002 * 22 12 11 24 24 C 1.38235 * 119.99866 * 179.81121 * 23 22 12 25 25 C 1.38234 * 120.00119 * 0.40115 * 24 23 22 26 26 C 1.38235 * 119.99850 * 359.85273 * 25 24 23 27 27 C 1.38238 * 120.00173 * 359.95614 * 26 25 24 28 28 C 1.52997 * 109.47474 * 60.00209 * 6 5 4 29 29 C 1.53002 * 109.46970 * 299.99645 * 28 6 5 30 30 H 1.09001 * 109.46832 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47269 * 300.00196 * 1 2 3 32 32 H 1.09000 * 109.46839 * 60.00992 * 1 2 3 33 33 H 1.09004 * 109.46943 * 300.00020 * 4 2 1 34 34 H 1.08999 * 109.47160 * 59.99894 * 4 2 1 35 35 H 1.08997 * 109.47116 * 179.97438 * 5 4 2 36 36 H 1.09001 * 109.46939 * 59.99587 * 5 4 2 37 37 H 0.97006 * 119.99926 * 264.99871 * 8 6 5 38 38 H 1.08999 * 109.47602 * 59.99354 * 11 9 8 39 39 H 1.09001 * 109.46553 * 299.99521 * 11 9 8 40 40 H 0.97005 * 120.00112 * 180.02562 * 17 16 14 41 41 H 1.08000 * 119.99707 * 359.97438 * 23 22 12 42 42 H 1.08001 * 119.99603 * 180.23025 * 24 23 22 43 43 H 1.07998 * 119.99573 * 179.83332 * 25 24 23 44 44 H 1.08001 * 119.99559 * 179.97438 * 26 25 24 45 45 H 1.07994 * 120.00143 * 180.02562 * 27 26 25 46 46 H 1.09001 * 109.47521 * 59.99572 * 28 6 5 47 47 H 1.09000 * 109.47615 * 180.02562 * 28 6 5 48 48 H 1.09004 * 109.47463 * 179.97438 * 29 28 6 49 49 H 1.08999 * 109.47445 * 300.00173 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7207 1.2498 6 6 4.0805 -1.4417 0.0006 7 1 3.7175 -2.4695 0.0005 8 7 5.5455 -1.4418 0.0013 9 6 6.2190 -2.3981 0.6708 10 8 5.6123 -3.2582 1.2731 11 6 7.7261 -2.3978 0.6720 12 6 8.2356 -3.5800 1.4987 13 1 7.7924 -4.5030 1.1246 14 6 7.8498 -3.3867 2.9426 15 1 7.7883 -2.3911 3.3564 16 6 7.5751 -4.4809 3.7352 17 7 7.3953 -4.3273 5.0288 18 14 7.4583 -6.1817 2.9715 19 1 6.0661 -6.4252 2.5158 20 1 8.3810 -6.2678 1.8112 21 1 7.8349 -7.2042 3.9803 22 6 9.7362 -3.6618 1.3864 23 6 10.5215 -2.6210 1.8457 24 6 11.8981 -2.6978 1.7463 25 6 12.4891 -3.8118 1.1801 26 6 11.7036 -4.8503 0.7160 27 6 10.3271 -4.7753 0.8190 28 6 3.5706 -0.7205 -1.2487 29 6 2.0406 -0.7211 -1.2491 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 1.6766 -0.2072 2.1393 34 1 1.6766 -1.7488 1.2494 35 1 3.9332 -1.2340 2.1400 36 1 3.9330 0.3071 1.2499 37 1 6.0308 -0.7535 -0.4802 38 1 8.0890 -1.4665 1.1069 39 1 8.0901 -2.4869 -0.3516 40 1 7.2024 -5.0972 5.5866 41 1 10.0595 -1.7490 2.2846 42 1 12.5117 -1.8863 2.1086 43 1 13.5645 -3.8705 1.1000 44 1 12.1654 -5.7204 0.2732 45 1 9.7135 -5.5868 0.4568 46 1 3.9336 0.3073 -1.2486 47 1 3.9339 -1.2345 -2.1387 48 1 1.6773 -0.2069 -2.1390 49 1 1.6775 -1.7488 -1.2493 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331053524.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:34 Heat of formation + Delta-G solvation = -45.337325 kcal Electronic energy + Delta-G solvation = -26550.609822 eV Core-core repulsion = 23054.868701 eV Total energy + Delta-G solvation = -3495.741121 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.67405 -38.67035 -37.86065 -34.50482 -33.84382 -31.69360 -31.01308 -30.77856 -30.18030 -28.87211 -26.44761 -25.17520 -22.75719 -22.62456 -21.87327 -21.22018 -20.10550 -19.85810 -19.01263 -16.92079 -16.56334 -16.15241 -15.68709 -14.95170 -14.62721 -14.34717 -14.29762 -14.24089 -14.05690 -13.76115 -13.38460 -13.05120 -12.73649 -12.71647 -12.51342 -12.38178 -12.21086 -12.19126 -11.90984 -11.80198 -11.55547 -11.15002 -11.03922 -10.89140 -10.78587 -10.71369 -10.52674 -10.38030 -10.28416 -10.08280 -9.83785 -9.54332 -9.18483 -8.86396 -8.52634 -8.34801 -8.17749 -7.78553 -5.96160 -3.91734 2.12446 2.17712 3.44767 3.49411 3.50994 3.55106 3.69223 4.55253 4.60916 4.61594 4.63522 4.81101 5.02451 5.17740 5.32733 5.34552 5.45096 5.48333 5.50942 5.53945 5.54308 5.58481 5.65565 5.71868 5.72665 5.76993 5.85274 5.95698 5.97193 6.03217 6.09761 6.10081 6.12148 6.21512 6.25994 6.26991 6.36107 6.45944 6.52487 6.64522 6.72892 6.86299 6.99673 7.06588 7.16953 7.30187 7.61476 7.75151 7.85588 8.10547 8.55740 9.03036 9.07072 9.69569 11.16767 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.016464 B = 0.003490 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.292963 B = 8020.404829 C = 8916.181615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 H 0.068 0.932 4 C -0.111 4.111 5 C -0.130 4.130 6 C 0.149 3.851 7 H 0.083 0.917 8 N -0.746 5.746 9 C 0.514 3.486 10 O -0.502 6.502 11 C -0.118 4.118 12 C 0.056 3.944 13 H 0.049 0.951 14 C -0.485 4.485 15 H 0.070 0.930 16 C 0.085 3.915 17 N -0.899 5.899 18 Si 0.872 3.128 19 H -0.275 1.275 20 H -0.259 1.259 21 H -0.296 1.296 22 C -0.037 4.037 23 C -0.102 4.102 24 C -0.127 4.127 25 C -0.150 4.150 26 C -0.126 4.126 27 C -0.137 4.137 28 C -0.125 4.125 29 C -0.110 4.110 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.392 0.608 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.261 0.739 41 H 0.119 0.881 42 H 0.110 0.890 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.112 0.888 46 H 0.064 0.936 47 H 0.066 0.934 48 H 0.062 0.938 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.966 8.932 -13.898 17.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 H 0.087 0.913 4 C -0.150 4.150 5 C -0.169 4.169 6 C 0.044 3.956 7 H 0.101 0.899 8 N -0.399 5.399 9 C 0.301 3.699 10 O -0.374 6.374 11 C -0.158 4.158 12 C 0.036 3.964 13 H 0.068 0.932 14 C -0.522 4.522 15 H 0.088 0.912 16 C -0.117 4.117 17 N -0.536 5.536 18 Si 0.700 3.300 19 H -0.201 1.201 20 H -0.184 1.184 21 H -0.223 1.223 22 C -0.038 4.038 23 C -0.121 4.121 24 C -0.145 4.145 25 C -0.168 4.168 26 C -0.144 4.144 27 C -0.155 4.155 28 C -0.163 4.163 29 C -0.148 4.148 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.224 0.776 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.137 0.863 42 H 0.128 0.872 43 H 0.125 0.875 44 H 0.126 0.874 45 H 0.130 0.870 46 H 0.083 0.917 47 H 0.084 0.916 48 H 0.081 0.919 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.454 8.159 -13.249 16.488 hybrid contribution 0.205 -0.611 -0.287 0.705 sum -5.249 7.548 -13.535 16.363 Atomic orbital electron populations 1.21830 0.95464 1.01796 1.01376 1.21179 0.95223 0.99620 0.95196 0.91327 1.21559 0.95470 1.00797 0.97133 1.21930 0.95061 1.00624 0.99303 1.20802 0.80529 1.00313 0.93974 0.89907 1.46229 1.06234 1.31823 1.55651 1.20816 0.90586 0.80767 0.77754 1.90729 1.69927 1.36733 1.40000 1.21671 0.91102 1.02604 1.00447 1.18135 0.86840 0.94301 0.97110 0.93247 1.20566 1.45426 0.94735 0.91501 0.91188 1.24876 0.93767 0.98762 0.94343 1.69908 1.48644 1.30808 1.04271 0.86943 0.79150 0.84525 0.79342 1.20061 1.18366 1.22318 1.20749 0.98479 0.92519 0.92024 1.20950 0.92726 0.99403 0.98974 1.21045 0.95159 0.97930 1.00392 1.20852 0.98660 0.95092 1.02245 1.20966 0.94045 0.98265 1.01160 1.21172 0.94423 0.98641 1.01298 1.21793 0.96063 1.00756 0.97654 1.21534 0.94699 1.00996 0.97542 0.92687 0.92769 0.92951 0.91953 0.91791 0.90712 0.92228 0.77557 0.89833 0.91456 0.92906 0.86347 0.87229 0.87465 0.87419 0.86980 0.91680 0.91574 0.91899 0.91734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.19 37.16 0.34 -0.87 16 2 C -0.09 -0.88 2.72 -90.61 -0.25 -1.12 16 3 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 4 C -0.11 -1.29 5.20 -26.73 -0.14 -1.43 16 5 C -0.13 -1.80 5.49 -26.73 -0.15 -1.95 16 6 C 0.15 2.02 2.45 -67.93 -0.17 1.85 16 7 H 0.08 1.33 7.58 -51.93 -0.39 0.94 16 8 N -0.75 -10.81 5.08 -53.81 -0.27 -11.09 16 9 C 0.51 9.96 7.55 -10.98 -0.08 9.88 16 10 O -0.50 -12.25 14.67 5.56 0.08 -12.17 16 11 C -0.12 -2.19 4.92 -27.88 -0.14 -2.33 16 12 C 0.06 1.27 1.24 -92.92 -0.11 1.16 16 13 H 0.05 1.21 4.77 -51.93 -0.25 0.96 16 14 C -0.49 -13.38 7.01 -34.44 -0.24 -13.62 16 15 H 0.07 2.09 8.06 -52.48 -0.42 1.67 16 16 C 0.08 2.50 5.47 -17.82 -0.10 2.40 16 17 N -0.90 -28.22 13.96 55.43 0.77 -27.45 16 18 Si 0.87 22.94 27.17 -169.99 -4.62 18.32 16 19 H -0.27 -7.43 7.11 56.52 0.40 -7.02 16 20 H -0.26 -6.28 4.75 56.52 0.27 -6.01 16 21 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 22 C -0.04 -0.78 4.77 -104.62 -0.50 -1.28 16 23 C -0.10 -2.01 8.86 -39.59 -0.35 -2.36 16 24 C -0.13 -2.19 10.05 -39.58 -0.40 -2.59 16 25 C -0.15 -2.48 10.05 -39.58 -0.40 -2.88 16 26 C -0.13 -2.20 10.05 -39.58 -0.40 -2.60 16 27 C -0.14 -2.74 9.09 -39.58 -0.36 -3.09 16 28 C -0.12 -1.24 5.39 -26.73 -0.14 -1.38 16 29 C -0.11 -1.00 5.21 -26.73 -0.14 -1.14 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.39 4.41 8.60 -40.82 -0.35 4.05 16 38 H 0.08 1.45 7.73 -51.93 -0.40 1.05 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 41 H 0.12 2.29 7.73 -52.49 -0.41 1.88 16 42 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 43 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 44 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 45 H 0.11 2.21 6.78 -52.49 -0.36 1.85 16 46 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 384.11 15.07 5.79 5.79 Total: -1.00 -33.24 384.11 -10.58 -43.82 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -8.61 Total: 6.12 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: -3.72 Total: -23.35 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.50 Total: -38.54 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.08 Total: -12.17 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.62 Total: 18.32 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.24 -10.58 -43.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331053524.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.522 kcal (2) G-P(sol) polarization free energy of solvation -33.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds