Wall clock time and date at job start Tue Mar 31 2020 10:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47198 * 2 1 4 4 C 1.53004 * 109.46825 * 119.99567 * 2 1 3 5 5 C 1.53002 * 109.47218 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.46732 * 299.99970 * 5 4 2 7 7 H 1.09001 * 109.47095 * 299.99521 * 6 5 4 8 8 N 1.46502 * 109.46851 * 180.02562 * 6 5 4 9 9 C 1.34776 * 120.00030 * 85.00181 * 8 6 5 10 10 O 1.21276 * 119.99917 * 359.97438 * 9 8 6 11 11 C 1.50704 * 119.99896 * 180.02562 * 9 8 6 12 12 C 1.52998 * 109.46990 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.47738 * 54.34267 * 12 11 9 14 14 C 1.50702 * 109.46938 * 294.34117 * 12 11 9 15 15 H 1.08004 * 119.99953 * 327.80213 * 14 12 11 16 16 C 1.37874 * 120.00081 * 147.79369 * 14 12 11 17 17 N 1.31513 * 120.00036 * 171.88062 * 16 14 12 18 18 Si 1.86799 * 120.00006 * 351.88298 * 16 14 12 19 19 H 1.48496 * 109.47157 * 271.83495 * 18 16 14 20 20 H 1.48499 * 109.47276 * 31.83596 * 18 16 14 21 21 H 1.48498 * 109.47132 * 151.83605 * 18 16 14 22 22 C 1.50702 * 109.47094 * 174.34808 * 12 11 9 23 23 C 1.38230 * 120.00329 * 62.28002 * 22 12 11 24 24 C 1.38235 * 119.99866 * 179.81121 * 23 22 12 25 25 C 1.38234 * 120.00119 * 0.40115 * 24 23 22 26 26 C 1.38235 * 119.99850 * 359.85273 * 25 24 23 27 27 C 1.38238 * 120.00173 * 359.95614 * 26 25 24 28 28 C 1.52997 * 109.47474 * 60.00209 * 6 5 4 29 29 C 1.53002 * 109.46970 * 299.99645 * 28 6 5 30 30 H 1.09001 * 109.46832 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47269 * 300.00196 * 1 2 3 32 32 H 1.09000 * 109.46839 * 60.00992 * 1 2 3 33 33 H 1.09004 * 109.46943 * 300.00020 * 4 2 1 34 34 H 1.08999 * 109.47160 * 59.99894 * 4 2 1 35 35 H 1.08997 * 109.47116 * 179.97438 * 5 4 2 36 36 H 1.09001 * 109.46939 * 59.99587 * 5 4 2 37 37 H 0.97006 * 119.99926 * 264.99871 * 8 6 5 38 38 H 1.08999 * 109.47602 * 59.99354 * 11 9 8 39 39 H 1.09001 * 109.46553 * 299.99521 * 11 9 8 40 40 H 0.97005 * 120.00112 * 180.02562 * 17 16 14 41 41 H 1.08000 * 119.99707 * 359.97438 * 23 22 12 42 42 H 1.08001 * 119.99603 * 180.23025 * 24 23 22 43 43 H 1.07998 * 119.99573 * 179.83332 * 25 24 23 44 44 H 1.08001 * 119.99559 * 179.97438 * 26 25 24 45 45 H 1.07994 * 120.00143 * 180.02562 * 27 26 25 46 46 H 1.09001 * 109.47521 * 59.99572 * 28 6 5 47 47 H 1.09000 * 109.47615 * 180.02562 * 28 6 5 48 48 H 1.09004 * 109.47463 * 179.97438 * 29 28 6 49 49 H 1.08999 * 109.47445 * 300.00173 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7207 1.2498 6 6 4.0805 -1.4417 0.0006 7 1 3.7175 -2.4695 0.0005 8 7 5.5455 -1.4418 0.0013 9 6 6.2190 -2.3981 0.6708 10 8 5.6123 -3.2582 1.2731 11 6 7.7261 -2.3978 0.6720 12 6 8.2356 -3.5800 1.4987 13 1 7.7924 -4.5030 1.1246 14 6 7.8498 -3.3867 2.9426 15 1 7.7883 -2.3911 3.3564 16 6 7.5751 -4.4809 3.7352 17 7 7.3953 -4.3273 5.0288 18 14 7.4583 -6.1817 2.9715 19 1 6.0661 -6.4252 2.5158 20 1 8.3810 -6.2678 1.8112 21 1 7.8349 -7.2042 3.9803 22 6 9.7362 -3.6618 1.3864 23 6 10.5215 -2.6210 1.8457 24 6 11.8981 -2.6978 1.7463 25 6 12.4891 -3.8118 1.1801 26 6 11.7036 -4.8503 0.7160 27 6 10.3271 -4.7753 0.8190 28 6 3.5706 -0.7205 -1.2487 29 6 2.0406 -0.7211 -1.2491 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 1.6766 -0.2072 2.1393 34 1 1.6766 -1.7488 1.2494 35 1 3.9332 -1.2340 2.1400 36 1 3.9330 0.3071 1.2499 37 1 6.0308 -0.7535 -0.4802 38 1 8.0890 -1.4665 1.1069 39 1 8.0901 -2.4869 -0.3516 40 1 7.2024 -5.0972 5.5866 41 1 10.0595 -1.7490 2.2846 42 1 12.5117 -1.8863 2.1086 43 1 13.5645 -3.8705 1.1000 44 1 12.1654 -5.7204 0.2732 45 1 9.7135 -5.5868 0.4568 46 1 3.9336 0.3073 -1.2486 47 1 3.9339 -1.2345 -2.1387 48 1 1.6773 -0.2069 -2.1390 49 1 1.6775 -1.7488 -1.2493 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331053524.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:33 Heat of formation + Delta-G solvation = -64.943700 kcal Electronic energy + Delta-G solvation = -26551.460018 eV Core-core repulsion = 23054.868701 eV Total energy + Delta-G solvation = -3496.591317 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.02992 -40.03908 -39.12828 -35.99658 -35.37684 -33.74083 -32.15961 -31.72143 -31.59372 -30.29148 -28.04249 -26.46209 -24.29482 -23.69166 -23.30092 -22.28764 -21.50338 -21.00836 -20.43647 -19.02632 -18.03711 -17.39744 -17.08151 -16.48783 -16.21981 -15.69649 -15.48396 -15.38424 -15.17886 -15.13545 -14.88090 -14.51367 -14.22311 -14.14290 -13.97029 -13.68131 -13.51115 -13.25000 -13.17452 -13.07918 -12.88491 -12.72504 -12.44727 -12.10040 -12.06896 -11.92791 -11.85968 -11.79985 -11.59179 -11.43160 -11.23919 -11.10616 -11.05849 -10.61652 -10.45992 -9.86350 -9.61267 -9.29387 -8.23726 -6.18559 0.69126 0.74215 1.28704 1.37033 1.39685 1.95531 2.39478 2.40788 3.07953 3.24630 3.71496 3.77472 3.92212 4.13385 4.13708 4.16063 4.24419 4.31177 4.32867 4.44344 4.46124 4.48432 4.50233 4.57355 4.63104 4.66706 4.80884 4.84767 4.86577 4.87668 4.98964 5.03218 5.08801 5.15289 5.19341 5.21448 5.21905 5.30570 5.39344 5.39663 5.41244 5.45123 5.58651 5.68319 5.74776 5.77604 5.83197 6.03323 6.33576 6.36517 6.79945 6.81473 7.44558 7.60151 8.93358 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.016464 B = 0.003490 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.292963 B = 8020.404829 C = 8916.181615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.088 4.088 3 H 0.081 0.919 4 C -0.110 4.110 5 C -0.126 4.126 6 C 0.146 3.854 7 H 0.051 0.949 8 N -0.724 5.724 9 C 0.509 3.491 10 O -0.564 6.564 11 C -0.113 4.113 12 C 0.056 3.944 13 H 0.032 0.968 14 C -0.462 4.462 15 H 0.033 0.967 16 C 0.023 3.977 17 N -0.953 5.953 18 Si 0.920 3.080 19 H -0.292 1.292 20 H -0.227 1.227 21 H -0.297 1.297 22 C -0.062 4.062 23 C -0.120 4.120 24 C -0.125 4.125 25 C -0.141 4.141 26 C -0.124 4.124 27 C -0.155 4.155 28 C -0.113 4.113 29 C -0.108 4.108 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.022 0.978 36 H 0.074 0.926 37 H 0.412 0.588 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.258 0.742 41 H 0.109 0.891 42 H 0.139 0.861 43 H 0.147 0.853 44 H 0.140 0.860 45 H 0.108 0.892 46 H 0.086 0.914 47 H 0.076 0.924 48 H 0.089 0.911 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.154 10.299 -17.391 20.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.106 4.106 3 H 0.099 0.901 4 C -0.148 4.148 5 C -0.165 4.165 6 C 0.042 3.958 7 H 0.069 0.931 8 N -0.378 5.378 9 C 0.297 3.703 10 O -0.441 6.441 11 C -0.153 4.153 12 C 0.037 3.963 13 H 0.050 0.950 14 C -0.499 4.499 15 H 0.051 0.949 16 C -0.173 4.173 17 N -0.594 5.594 18 Si 0.747 3.253 19 H -0.219 1.219 20 H -0.150 1.150 21 H -0.224 1.224 22 C -0.063 4.063 23 C -0.138 4.138 24 C -0.143 4.143 25 C -0.158 4.158 26 C -0.142 4.142 27 C -0.173 4.173 28 C -0.151 4.151 29 C -0.146 4.146 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.041 0.959 36 H 0.093 0.907 37 H 0.249 0.751 38 H 0.113 0.887 39 H 0.123 0.877 40 H 0.066 0.934 41 H 0.128 0.872 42 H 0.157 0.843 43 H 0.164 0.836 44 H 0.158 0.842 45 H 0.126 0.874 46 H 0.105 0.895 47 H 0.095 0.905 48 H 0.107 0.893 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.617 9.580 -16.814 19.687 hybrid contribution -0.288 -0.903 0.751 1.209 sum -3.905 8.677 -16.064 18.670 Atomic orbital electron populations 1.21811 0.94377 1.01769 1.02321 1.21150 0.96097 0.99714 0.93678 0.90101 1.21552 0.93693 1.00461 0.99084 1.21860 0.96820 1.00598 0.97219 1.20913 0.79626 0.99238 0.96065 0.93107 1.46010 1.06916 1.30821 1.54025 1.21064 0.91114 0.80821 0.77323 1.90712 1.71022 1.39416 1.42937 1.21600 0.90522 1.01250 1.01934 1.18011 0.88732 0.95205 0.94349 0.95016 1.20788 1.42802 0.92546 0.93810 0.94919 1.25592 0.94745 1.02338 0.94662 1.70045 1.52244 1.31425 1.05726 0.86162 0.78695 0.80808 0.79599 1.21895 1.14969 1.22375 1.20489 0.96900 0.94172 0.94690 1.21004 0.94154 0.98983 0.99640 1.21398 0.94193 0.99220 0.99455 1.21334 1.00653 0.93848 1.00004 1.21335 0.92918 0.99620 1.00317 1.21270 0.95960 0.97995 1.02042 1.21745 0.96678 1.01320 0.95383 1.21559 0.93882 1.00828 0.98370 0.93251 0.92636 0.91213 0.91761 0.93381 0.95924 0.90692 0.75117 0.88720 0.87671 0.93358 0.87243 0.84278 0.83562 0.84249 0.87356 0.89537 0.90522 0.89259 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.19 71.98 0.66 -1.45 16 2 C -0.09 -1.49 2.72 -10.79 -0.03 -1.52 16 3 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 4 C -0.11 -2.61 5.20 30.60 0.16 -2.45 16 5 C -0.13 -3.64 5.49 30.59 0.17 -3.47 16 6 C 0.15 4.01 2.45 44.99 0.11 4.12 16 7 H 0.05 1.74 7.58 -2.39 -0.02 1.72 16 8 N -0.72 -20.82 5.08 -442.53 -2.25 -23.07 16 9 C 0.51 20.30 7.55 87.66 0.66 20.96 16 10 O -0.56 -29.27 14.67 -3.02 -0.04 -29.31 16 11 C -0.11 -4.18 4.92 29.85 0.15 -4.04 16 12 C 0.06 2.63 1.24 -12.29 -0.02 2.61 16 13 H 0.03 1.58 4.77 -2.39 -0.01 1.57 16 14 C -0.46 -26.72 7.01 25.60 0.18 -26.54 16 15 H 0.03 2.08 8.06 -2.91 -0.02 2.06 16 16 C 0.02 1.41 5.47 84.65 0.46 1.87 16 17 N -0.95 -63.42 13.96 21.45 0.30 -63.12 16 18 Si 0.92 49.30 27.17 68.60 1.86 51.16 16 19 H -0.29 -16.30 7.11 99.48 0.71 -15.60 16 20 H -0.23 -10.80 4.75 99.48 0.47 -10.33 16 21 H -0.30 -15.71 7.11 99.48 0.71 -15.00 16 22 C -0.06 -2.58 4.77 -19.87 -0.09 -2.67 16 23 C -0.12 -4.56 8.86 22.27 0.20 -4.36 16 24 C -0.12 -3.88 10.05 22.27 0.22 -3.66 16 25 C -0.14 -3.98 10.05 22.27 0.22 -3.75 16 26 C -0.12 -3.83 10.05 22.27 0.22 -3.61 16 27 C -0.15 -5.85 9.09 22.27 0.20 -5.65 16 28 C -0.11 -1.98 5.39 30.59 0.16 -1.81 16 29 C -0.11 -1.71 5.21 30.60 0.16 -1.56 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 0.79 8.14 -2.39 -0.02 0.78 16 33 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.41 8.44 8.60 -92.70 -0.80 7.64 16 38 H 0.09 3.28 7.73 -2.39 -0.02 3.26 16 39 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 40 H 0.26 16.39 8.31 -92.70 -0.77 15.62 16 41 H 0.11 4.25 7.73 -2.91 -0.02 4.22 16 42 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 43 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 44 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 45 H 0.11 4.09 6.78 -2.91 -0.02 4.07 16 46 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.09 1.02 8.14 -2.38 -0.02 1.01 16 49 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -79.45 384.11 3.56 -75.90 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: -0.12 Total: 25.41 kcal Atomic # 6 Polarization: -40.78 SS G_CDS: 3.81 Total: -36.97 kcal Atomic # 7 Polarization: -84.24 SS G_CDS: -1.95 Total: -86.19 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -0.04 Total: -29.31 kcal Atomic # 14 Polarization: 49.30 SS G_CDS: 1.86 Total: 51.16 kcal Total: -79.45 3.56 -75.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331053524.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.952 kcal (2) G-P(sol) polarization free energy of solvation -79.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds