Wall clock time and date at job start Tue Mar 31 2020 11:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47003 * 2 1 4 4 C 1.34773 * 120.00269 * 270.45440 * 3 2 1 5 5 O 1.21590 * 120.00351 * 177.65577 * 4 3 2 6 6 C 1.47649 * 119.99941 * 357.65341 * 4 3 2 7 7 C 1.40013 * 119.89316 * 22.52539 * 6 4 3 8 8 C 1.36311 * 120.10580 * 179.71648 * 7 6 4 9 9 C 1.40892 * 119.89136 * 0.57689 * 8 7 6 10 10 C 1.41111 * 120.10436 * 179.71704 * 9 8 7 11 11 H 1.07995 * 120.00171 * 212.47747 * 10 9 8 12 12 C 1.40231 * 119.99633 * 32.48454 * 10 9 8 13 13 N 1.30639 * 120.00181 * 7.07299 * 12 10 9 14 14 Si 1.86800 * 119.99381 * 187.07657 * 12 10 9 15 15 H 1.48494 * 109.47292 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47338 * 120.00020 * 14 12 10 17 17 H 1.48503 * 109.46816 * 239.99533 * 14 12 10 18 18 C 1.40882 * 119.79239 * 359.69686 * 9 8 7 19 19 C 1.36316 * 119.89401 * 359.97438 * 18 9 8 20 20 C 1.46505 * 120.00059 * 90.45559 * 3 2 1 21 21 H 1.08996 * 109.47375 * 135.33878 * 20 3 2 22 22 C 1.53006 * 109.46648 * 15.33959 * 20 3 2 23 23 C 1.52995 * 109.47237 * 300.00106 * 22 20 3 24 24 C 1.53007 * 109.46968 * 299.99877 * 23 22 20 25 25 C 1.53000 * 109.46842 * 60.00478 * 24 23 22 26 26 C 1.52995 * 109.46949 * 299.99534 * 25 24 23 27 27 H 1.08998 * 109.47406 * 300.00092 * 26 25 24 28 28 C 1.53000 * 109.46949 * 179.97438 * 26 25 24 29 29 H 1.08994 * 109.47374 * 291.80869 * 1 2 3 30 30 H 1.09009 * 109.47012 * 51.80650 * 1 2 3 31 31 H 1.08998 * 109.46984 * 171.80328 * 1 2 3 32 32 H 1.09000 * 109.46941 * 240.00036 * 2 1 3 33 33 H 1.08998 * 109.46654 * 120.00129 * 2 1 3 34 34 H 1.07996 * 119.94373 * 359.97438 * 7 6 4 35 35 H 1.08004 * 120.05860 * 180.25019 * 8 7 6 36 36 H 0.97004 * 119.99499 * 180.02562 * 13 12 10 37 37 H 1.08001 * 120.05533 * 180.02562 * 18 9 8 38 38 H 1.08004 * 119.94975 * 180.02562 * 19 18 9 39 39 H 1.08998 * 109.46956 * 60.00767 * 22 20 3 40 40 H 1.08998 * 109.46654 * 179.97438 * 22 20 3 41 41 H 1.08998 * 109.47406 * 60.00328 * 23 22 20 42 42 H 1.09006 * 109.47162 * 180.02562 * 23 22 20 43 43 H 1.08995 * 109.46986 * 300.00175 * 24 23 22 44 44 H 1.08997 * 109.46545 * 180.02562 * 24 23 22 45 45 H 1.08996 * 109.46710 * 179.97438 * 25 24 23 46 46 H 1.08998 * 109.47141 * 59.99787 * 25 24 23 47 47 H 1.08996 * 109.47469 * 312.10933 * 28 26 25 48 48 H 1.09004 * 109.47076 * 72.10946 * 28 26 25 49 49 H 1.09003 * 109.47528 * 192.11071 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2342 2.0197 -1.1671 5 8 2.5987 3.1797 -1.1672 6 6 2.0283 1.3105 -2.4456 7 6 1.1897 0.1904 -2.4951 8 6 0.9919 -0.4641 -3.6743 9 6 1.6426 -0.0191 -4.8421 10 6 1.4457 -0.6969 -6.0640 11 1 2.2453 -0.7478 -6.7882 12 6 0.2118 -1.3043 -6.3379 13 7 -0.7976 -1.1271 -5.5279 14 14 0.0118 -2.3669 -7.8612 15 1 1.2944 -2.4075 -8.6084 16 1 -0.3702 -3.7440 -7.4575 17 1 -1.0482 -1.7935 -8.7289 18 6 2.4900 1.1050 -4.7861 19 6 2.6763 1.7571 -3.6036 20 6 2.2720 2.0685 1.2687 21 1 3.2242 2.5960 1.2122 22 6 2.3237 1.0428 2.4028 23 6 0.9872 0.3024 2.4822 24 6 -0.1362 1.3054 2.7525 25 6 -0.1879 2.3310 1.6184 26 6 1.1486 3.0714 1.5390 27 1 1.3373 3.5827 2.4829 28 6 1.0970 4.0966 0.4044 29 1 -0.3634 0.3818 0.9540 30 1 -0.3633 0.6355 -0.8077 31 1 -0.3633 -1.0172 -0.1465 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.6954 -0.1530 -1.5984 35 1 0.3416 -1.3256 -3.7124 36 1 -1.6510 -1.5477 -5.7172 37 1 2.9905 1.4500 -5.6788 38 1 3.3254 2.6192 -3.5598 39 1 3.1241 0.3284 2.2103 40 1 2.5129 1.5541 3.3467 41 1 0.7985 -0.2090 1.5383 42 1 1.0239 -0.4281 3.2905 43 1 0.0526 1.8166 3.6964 44 1 -1.0882 0.7777 2.8095 45 1 -0.9885 3.0452 1.8107 46 1 -0.3767 1.8196 0.6744 47 1 0.7002 3.6244 -0.4942 48 1 0.4523 4.9265 0.6937 49 1 2.1019 4.4693 0.2055 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340119382.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:13 Heat of formation + Delta-G solvation = 81.093410 kcal Electronic energy + Delta-G solvation = -28345.889456 eV Core-core repulsion = 24855.630783 eV Total energy + Delta-G solvation = -3490.258673 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -41.37144 -38.20976 -37.03640 -35.08177 -33.63839 -32.98642 -31.76561 -29.87898 -29.42975 -28.88907 -26.13865 -25.59349 -23.33248 -22.58961 -21.59239 -21.48022 -20.79219 -19.90810 -18.04996 -17.51570 -16.53176 -16.02578 -15.68371 -15.56013 -15.11743 -14.56729 -14.15139 -13.90307 -13.63325 -13.30880 -13.01216 -12.87306 -12.57019 -12.47610 -12.42751 -12.17506 -11.88414 -11.76822 -11.58781 -11.49581 -11.37206 -11.23110 -11.16804 -11.05539 -10.83494 -10.66416 -10.37588 -10.23501 -10.04722 -9.92253 -9.87820 -9.70242 -9.39641 -9.08767 -8.61389 -8.04779 -7.58819 -7.38430 -6.88227 -4.56045 2.29736 2.95378 2.99287 3.03466 3.04789 3.54893 3.80819 3.88786 4.59504 4.73798 4.78371 4.79778 5.12477 5.20783 5.28200 5.37840 5.42568 5.51857 5.53147 5.55292 5.60240 5.63624 5.75058 5.85356 5.90909 6.01297 6.03189 6.09169 6.11340 6.22837 6.26491 6.28335 6.32268 6.34903 6.43060 6.45652 6.53972 6.61998 6.83746 6.91971 6.96479 7.06473 7.17500 7.20548 7.52130 7.66766 7.84725 7.92661 8.13567 8.17540 8.48195 8.71471 8.81511 9.10665 10.04598 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.021549 B = 0.003839 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.058645 B = 7292.593408 C = 7931.144095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.069 3.931 3 N -0.605 5.605 4 C 0.569 3.431 5 O -0.559 6.559 6 C -0.268 4.268 7 C -0.120 4.120 8 C -0.169 4.169 9 C 0.128 3.872 10 C -0.454 4.454 11 H 0.081 0.919 12 C 0.073 3.927 13 N -0.790 5.790 14 Si 0.914 3.086 15 H -0.260 1.260 16 H -0.271 1.271 17 H -0.273 1.273 18 C -0.231 4.231 19 C -0.032 4.032 20 C 0.156 3.844 21 H 0.075 0.925 22 C -0.122 4.122 23 C -0.197 4.197 24 C -0.116 4.116 25 C -0.142 4.142 26 C -0.096 4.096 27 H 0.065 0.935 28 C -0.137 4.137 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.146 0.854 35 H 0.120 0.880 36 H 0.282 0.718 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.137 0.863 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.059 0.941 45 H 0.054 0.946 46 H 0.094 0.906 47 H 0.059 0.941 48 H 0.027 0.973 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.150 -0.874 13.469 13.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 C -0.054 4.054 3 N -0.338 5.338 4 C 0.365 3.635 5 O -0.440 6.440 6 C -0.273 4.273 7 C -0.138 4.138 8 C -0.188 4.188 9 C 0.125 3.875 10 C -0.483 4.483 11 H 0.099 0.901 12 C -0.145 4.145 13 N -0.415 5.415 14 Si 0.738 3.262 15 H -0.183 1.183 16 H -0.196 1.196 17 H -0.198 1.198 18 C -0.250 4.250 19 C -0.051 4.051 20 C 0.052 3.948 21 H 0.093 0.907 22 C -0.160 4.160 23 C -0.233 4.233 24 C -0.153 4.153 25 C -0.179 4.179 26 C -0.115 4.115 27 H 0.083 0.917 28 C -0.194 4.194 29 H 0.123 0.877 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.125 0.875 33 H 0.109 0.891 34 H 0.162 0.838 35 H 0.137 0.863 36 H 0.093 0.907 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.154 0.846 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.112 0.888 47 H 0.078 0.922 48 H 0.046 0.954 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.197 -0.323 13.504 13.509 hybrid contribution -0.326 -0.357 -0.637 0.800 sum -0.523 -0.680 12.867 12.896 Atomic orbital electron populations 1.23453 0.96957 1.03368 1.04886 1.22700 0.93688 0.84479 1.04488 1.47756 1.67452 1.13540 1.05084 1.18567 0.75862 0.85592 0.83516 1.90650 1.49103 1.16782 1.87515 1.18976 1.11961 1.03876 0.92445 1.22324 0.97228 0.94531 0.99712 1.21080 1.04346 1.02132 0.91270 1.17845 0.88113 0.88582 0.92952 1.19788 0.98211 1.28339 1.01967 0.90092 1.25996 0.95413 0.94836 0.98298 1.69709 1.01989 1.34448 1.35324 0.86159 0.79499 0.79592 0.80937 1.18317 1.19619 1.19799 1.20795 1.08390 0.99427 0.96427 1.20354 0.96205 0.96718 0.91870 1.20937 0.97946 0.92600 0.83291 0.90711 1.21727 0.97983 0.98252 0.98018 1.23372 0.94583 0.98904 1.06452 1.21469 0.98246 0.97135 0.98489 1.22204 0.97029 0.98073 1.00617 1.21482 0.95060 0.96029 0.98975 0.91690 1.22152 1.02735 0.97029 0.97516 0.87745 0.90166 0.91269 0.87464 0.89101 0.83761 0.86266 0.90657 0.88552 0.88507 0.91561 0.91227 0.84616 0.92606 0.92588 0.92257 0.92771 0.88822 0.92239 0.95366 0.90424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -2.99 5.67 37.16 0.21 -2.78 16 2 C 0.07 0.96 4.69 -4.04 -0.02 0.94 16 3 N -0.60 -9.71 2.13 -180.91 -0.39 -10.10 16 4 C 0.57 11.54 6.14 -12.42 -0.08 11.46 16 5 O -0.56 -12.38 12.00 5.29 0.06 -12.31 16 6 C -0.27 -5.97 5.67 -104.73 -0.59 -6.56 16 7 C -0.12 -2.57 6.82 -39.61 -0.27 -2.84 16 8 C -0.17 -4.07 8.57 -39.27 -0.34 -4.41 16 9 C 0.13 3.26 5.52 -106.80 -0.59 2.67 16 10 C -0.45 -11.45 9.04 -37.74 -0.34 -11.79 16 11 H 0.08 1.97 7.86 -52.49 -0.41 1.56 16 12 C 0.07 1.74 5.30 -17.31 -0.09 1.65 16 13 N -0.79 -19.27 10.89 55.56 0.61 -18.67 16 14 Si 0.91 17.73 29.57 -169.99 -5.03 12.71 16 15 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 16 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 17 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 18 C -0.23 -5.61 9.73 -39.27 -0.38 -5.99 16 19 C -0.03 -0.75 9.52 -39.61 -0.38 -1.13 16 20 C 0.16 2.19 2.53 -67.92 -0.17 2.01 16 21 H 0.07 1.15 7.92 -51.93 -0.41 0.74 16 22 C -0.12 -1.33 4.98 -26.73 -0.13 -1.47 16 23 C -0.20 -2.00 4.80 -26.73 -0.13 -2.12 16 24 C -0.12 -1.20 5.01 -26.73 -0.13 -1.33 16 25 C -0.14 -1.79 4.67 -26.73 -0.12 -1.91 16 26 C -0.10 -1.32 2.54 -90.62 -0.23 -1.55 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 C -0.14 -2.26 7.41 37.16 0.28 -1.99 16 29 H 0.10 1.21 2.34 -51.93 -0.12 1.09 16 30 H 0.08 1.27 6.20 -51.92 -0.32 0.95 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.11 1.71 4.79 -51.93 -0.25 1.46 16 33 H 0.09 1.04 4.36 -51.93 -0.23 0.82 16 34 H 0.15 2.59 1.74 -60.64 -0.11 2.49 16 35 H 0.12 2.93 6.37 -52.48 -0.33 2.60 16 36 H 0.28 6.24 8.29 -40.82 -0.34 5.90 16 37 H 0.10 2.21 8.06 -52.49 -0.42 1.78 16 38 H 0.10 2.18 7.80 -52.48 -0.41 1.77 16 39 H 0.07 0.70 7.64 -51.93 -0.40 0.30 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.14 1.43 1.54 -78.10 -0.12 1.31 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.56 7.98 -51.93 -0.41 0.15 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.09 1.31 3.77 -51.93 -0.20 1.11 16 47 H 0.06 1.14 6.05 -51.93 -0.31 0.83 16 48 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 49 H 0.08 1.41 6.35 -51.93 -0.33 1.08 16 LS Contribution 340.56 15.07 5.13 5.13 Total: -1.00 -27.19 340.56 -10.00 -37.20 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -6.88 Total: 13.18 kcal Atomic # 6 Polarization: -23.62 SS G_CDS: -3.51 Total: -27.14 kcal Atomic # 7 Polarization: -28.99 SS G_CDS: 0.22 Total: -28.77 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.06 Total: -12.31 kcal Atomic # 14 Polarization: 17.73 SS G_CDS: -5.03 Total: 12.71 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -27.19 -10.00 -37.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340119382.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.291 kcal (2) G-P(sol) polarization free energy of solvation -27.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds