Wall clock time and date at job start Tue Mar 31 2020 11:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47003 * 2 1 4 4 C 1.34773 * 120.00269 * 270.45440 * 3 2 1 5 5 O 1.21590 * 120.00351 * 177.65577 * 4 3 2 6 6 C 1.47649 * 119.99941 * 357.65341 * 4 3 2 7 7 C 1.40013 * 119.89316 * 22.52539 * 6 4 3 8 8 C 1.36311 * 120.10580 * 179.71648 * 7 6 4 9 9 C 1.40892 * 119.89136 * 0.57689 * 8 7 6 10 10 C 1.41111 * 120.10436 * 179.71704 * 9 8 7 11 11 H 1.07995 * 120.00171 * 212.47747 * 10 9 8 12 12 C 1.40231 * 119.99633 * 32.48454 * 10 9 8 13 13 N 1.30639 * 120.00181 * 7.07299 * 12 10 9 14 14 Si 1.86800 * 119.99381 * 187.07657 * 12 10 9 15 15 H 1.48494 * 109.47292 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47338 * 120.00020 * 14 12 10 17 17 H 1.48503 * 109.46816 * 239.99533 * 14 12 10 18 18 C 1.40882 * 119.79239 * 359.69686 * 9 8 7 19 19 C 1.36316 * 119.89401 * 359.97438 * 18 9 8 20 20 C 1.46505 * 120.00059 * 90.45559 * 3 2 1 21 21 H 1.08996 * 109.47375 * 135.33878 * 20 3 2 22 22 C 1.53006 * 109.46648 * 15.33959 * 20 3 2 23 23 C 1.52995 * 109.47237 * 300.00106 * 22 20 3 24 24 C 1.53007 * 109.46968 * 299.99877 * 23 22 20 25 25 C 1.53000 * 109.46842 * 60.00478 * 24 23 22 26 26 C 1.52995 * 109.46949 * 299.99534 * 25 24 23 27 27 H 1.08998 * 109.47406 * 300.00092 * 26 25 24 28 28 C 1.53000 * 109.46949 * 179.97438 * 26 25 24 29 29 H 1.08994 * 109.47374 * 291.80869 * 1 2 3 30 30 H 1.09009 * 109.47012 * 51.80650 * 1 2 3 31 31 H 1.08998 * 109.46984 * 171.80328 * 1 2 3 32 32 H 1.09000 * 109.46941 * 240.00036 * 2 1 3 33 33 H 1.08998 * 109.46654 * 120.00129 * 2 1 3 34 34 H 1.07996 * 119.94373 * 359.97438 * 7 6 4 35 35 H 1.08004 * 120.05860 * 180.25019 * 8 7 6 36 36 H 0.97004 * 119.99499 * 180.02562 * 13 12 10 37 37 H 1.08001 * 120.05533 * 180.02562 * 18 9 8 38 38 H 1.08004 * 119.94975 * 180.02562 * 19 18 9 39 39 H 1.08998 * 109.46956 * 60.00767 * 22 20 3 40 40 H 1.08998 * 109.46654 * 179.97438 * 22 20 3 41 41 H 1.08998 * 109.47406 * 60.00328 * 23 22 20 42 42 H 1.09006 * 109.47162 * 180.02562 * 23 22 20 43 43 H 1.08995 * 109.46986 * 300.00175 * 24 23 22 44 44 H 1.08997 * 109.46545 * 180.02562 * 24 23 22 45 45 H 1.08996 * 109.46710 * 179.97438 * 25 24 23 46 46 H 1.08998 * 109.47141 * 59.99787 * 25 24 23 47 47 H 1.08996 * 109.47469 * 312.10933 * 28 26 25 48 48 H 1.09004 * 109.47076 * 72.10946 * 28 26 25 49 49 H 1.09003 * 109.47528 * 192.11071 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2342 2.0197 -1.1671 5 8 2.5987 3.1797 -1.1672 6 6 2.0283 1.3105 -2.4456 7 6 1.1897 0.1904 -2.4951 8 6 0.9919 -0.4641 -3.6743 9 6 1.6426 -0.0191 -4.8421 10 6 1.4457 -0.6969 -6.0640 11 1 2.2453 -0.7478 -6.7882 12 6 0.2118 -1.3043 -6.3379 13 7 -0.7976 -1.1271 -5.5279 14 14 0.0118 -2.3669 -7.8612 15 1 1.2944 -2.4075 -8.6084 16 1 -0.3702 -3.7440 -7.4575 17 1 -1.0482 -1.7935 -8.7289 18 6 2.4900 1.1050 -4.7861 19 6 2.6763 1.7571 -3.6036 20 6 2.2720 2.0685 1.2687 21 1 3.2242 2.5960 1.2122 22 6 2.3237 1.0428 2.4028 23 6 0.9872 0.3024 2.4822 24 6 -0.1362 1.3054 2.7525 25 6 -0.1879 2.3310 1.6184 26 6 1.1486 3.0714 1.5390 27 1 1.3373 3.5827 2.4829 28 6 1.0970 4.0966 0.4044 29 1 -0.3634 0.3818 0.9540 30 1 -0.3633 0.6355 -0.8077 31 1 -0.3633 -1.0172 -0.1465 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.6954 -0.1530 -1.5984 35 1 0.3416 -1.3256 -3.7124 36 1 -1.6510 -1.5477 -5.7172 37 1 2.9905 1.4500 -5.6788 38 1 3.3254 2.6192 -3.5598 39 1 3.1241 0.3284 2.2103 40 1 2.5129 1.5541 3.3467 41 1 0.7985 -0.2090 1.5383 42 1 1.0239 -0.4281 3.2905 43 1 0.0526 1.8166 3.6964 44 1 -1.0882 0.7777 2.8095 45 1 -0.9885 3.0452 1.8107 46 1 -0.3767 1.8196 0.6744 47 1 0.7002 3.6244 -0.4942 48 1 0.4523 4.9265 0.6937 49 1 2.1019 4.4693 0.2055 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340119382.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:12 Heat of formation + Delta-G solvation = 69.040633 kcal Electronic energy + Delta-G solvation = -28346.412103 eV Core-core repulsion = 24855.630783 eV Total energy + Delta-G solvation = -3490.781321 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.60031 -39.76099 -38.69493 -36.45229 -35.34903 -34.16989 -32.92560 -31.62596 -31.08049 -30.16934 -27.70597 -26.96541 -24.47736 -24.05321 -23.11282 -22.71818 -22.07746 -21.34205 -19.42339 -19.29197 -17.99760 -17.50199 -17.00789 -16.94107 -16.59160 -15.59615 -15.58651 -15.35321 -15.04866 -14.89668 -14.49457 -14.20055 -14.03912 -13.77871 -13.61465 -13.48109 -13.40348 -13.08844 -12.91882 -12.82625 -12.78156 -12.70389 -12.52846 -12.37331 -12.30838 -12.06369 -11.71456 -11.61624 -11.37115 -11.16097 -11.08328 -11.03245 -10.90699 -10.52884 -10.09731 -9.48393 -9.39057 -9.20313 -8.67080 -6.46922 0.51962 1.14785 1.39931 1.42114 1.54512 2.16781 2.21314 2.22843 2.81098 3.65968 3.71920 3.80628 3.82261 4.01881 4.10525 4.26525 4.28505 4.31397 4.44134 4.47153 4.50667 4.58577 4.60158 4.64392 4.71519 4.78572 4.82520 4.93763 4.97441 4.99887 5.06165 5.10605 5.11532 5.19205 5.22830 5.30049 5.33049 5.35727 5.38473 5.44096 5.48226 5.56797 5.65906 5.66699 5.80851 5.94415 6.01871 6.05225 6.28909 6.60698 6.63554 6.83866 6.93971 7.52274 8.28618 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.021549 B = 0.003839 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.058645 B = 7292.593408 C = 7931.144095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.063 3.937 3 N -0.592 5.592 4 C 0.565 3.435 5 O -0.584 6.584 6 C -0.276 4.276 7 C -0.108 4.108 8 C -0.188 4.188 9 C 0.100 3.900 10 C -0.489 4.489 11 H 0.078 0.922 12 C 0.036 3.964 13 N -0.818 5.818 14 Si 0.988 3.012 15 H -0.260 1.260 16 H -0.259 1.259 17 H -0.267 1.267 18 C -0.247 4.247 19 C -0.045 4.045 20 C 0.149 3.851 21 H 0.057 0.943 22 C -0.116 4.116 23 C -0.196 4.196 24 C -0.112 4.112 25 C -0.143 4.143 26 C -0.093 4.093 27 H 0.086 0.914 28 C -0.130 4.130 29 H 0.127 0.873 30 H 0.048 0.952 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.130 0.870 34 H 0.182 0.818 35 H 0.112 0.888 36 H 0.292 0.708 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.128 0.872 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.057 0.943 46 H 0.076 0.924 47 H 0.025 0.975 48 H 0.039 0.961 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.143 -2.509 16.221 16.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 C -0.059 4.059 3 N -0.324 5.324 4 C 0.359 3.641 5 O -0.468 6.468 6 C -0.280 4.280 7 C -0.125 4.125 8 C -0.207 4.207 9 C 0.097 3.903 10 C -0.518 4.518 11 H 0.096 0.904 12 C -0.180 4.180 13 N -0.443 5.443 14 Si 0.808 3.192 15 H -0.183 1.183 16 H -0.183 1.183 17 H -0.192 1.192 18 C -0.267 4.267 19 C -0.065 4.065 20 C 0.046 3.954 21 H 0.075 0.925 22 C -0.154 4.154 23 C -0.231 4.231 24 C -0.149 4.149 25 C -0.180 4.180 26 C -0.112 4.112 27 H 0.105 0.895 28 C -0.187 4.187 29 H 0.145 0.855 30 H 0.067 0.933 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.147 0.853 34 H 0.198 0.802 35 H 0.130 0.870 36 H 0.103 0.897 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.092 0.908 40 H 0.108 0.892 41 H 0.145 0.855 42 H 0.100 0.900 43 H 0.088 0.912 44 H 0.092 0.908 45 H 0.075 0.925 46 H 0.094 0.906 47 H 0.044 0.956 48 H 0.058 0.942 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.191 -1.970 16.296 16.457 hybrid contribution 0.005 0.273 -1.356 1.383 sum -1.186 -1.697 14.940 15.082 Atomic orbital electron populations 1.23436 0.95908 1.04102 1.04936 1.22903 0.94479 0.83158 1.05313 1.47721 1.65829 1.14192 1.04654 1.18347 0.76233 0.85279 0.84253 1.90646 1.50354 1.17729 1.88023 1.19360 1.11286 1.03991 0.93383 1.22771 0.96065 0.93403 1.00275 1.21110 1.05051 1.02676 0.91892 1.18189 0.88933 0.89227 0.93910 1.20010 0.99282 1.30223 1.02251 0.90375 1.26814 0.94406 0.95431 1.01348 1.69746 1.02611 1.34983 1.36991 0.85065 0.79302 0.77981 0.76829 1.18331 1.18321 1.19230 1.20912 1.08993 0.99794 0.96978 1.20506 0.96716 0.96875 0.92358 1.21164 0.97273 0.93717 0.83206 0.92461 1.21742 0.98949 0.97595 0.97105 1.23314 0.93748 0.99116 1.06960 1.21457 0.99131 0.96553 0.97772 1.22186 0.96097 0.98720 1.00995 1.21475 0.95855 0.95397 0.98461 0.89548 1.22006 1.01211 0.98099 0.97413 0.85533 0.93301 0.89161 0.89645 0.85301 0.80207 0.86964 0.89712 0.88291 0.88395 0.90818 0.89176 0.85455 0.90050 0.91214 0.90788 0.92468 0.90563 0.95622 0.94208 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -5.43 5.67 71.98 0.41 -5.02 16 2 C 0.06 1.63 4.69 86.38 0.40 2.03 16 3 N -0.59 -18.57 2.13 -844.52 -1.80 -20.37 16 4 C 0.56 23.49 6.14 86.73 0.53 24.02 16 5 O -0.58 -26.90 12.00 -4.00 -0.05 -26.94 16 6 C -0.28 -12.73 5.67 -19.93 -0.11 -12.84 16 7 C -0.11 -4.74 6.82 22.25 0.15 -4.58 16 8 C -0.19 -9.40 8.57 22.47 0.19 -9.21 16 9 C 0.10 5.36 5.52 -21.28 -0.12 5.24 16 10 C -0.49 -25.65 9.04 23.46 0.21 -25.44 16 11 H 0.08 3.97 7.86 -2.91 -0.02 3.95 16 12 C 0.04 1.73 5.30 85.35 0.45 2.19 16 13 N -0.82 -40.58 10.89 21.87 0.24 -40.35 16 14 Si 0.99 36.43 29.57 68.60 2.03 38.46 16 15 H -0.26 -9.47 7.11 99.48 0.71 -8.77 16 16 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 17 H -0.27 -9.57 7.11 99.48 0.71 -8.87 16 18 C -0.25 -12.70 9.73 22.47 0.22 -12.48 16 19 C -0.05 -2.23 9.52 22.25 0.21 -2.02 16 20 C 0.15 3.92 2.53 44.99 0.11 4.03 16 21 H 0.06 1.72 7.92 -2.39 -0.02 1.70 16 22 C -0.12 -2.06 4.98 30.59 0.15 -1.90 16 23 C -0.20 -2.97 4.80 30.59 0.15 -2.83 16 24 C -0.11 -1.78 5.01 30.60 0.15 -1.63 16 25 C -0.14 -3.21 4.67 30.59 0.14 -3.06 16 26 C -0.09 -2.37 2.54 -10.80 -0.03 -2.40 16 27 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 28 C -0.13 -4.33 7.41 71.98 0.53 -3.80 16 29 H 0.13 2.51 2.34 -2.39 -0.01 2.51 16 30 H 0.05 1.51 6.20 -2.38 -0.01 1.50 16 31 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.09 2.64 4.79 -2.39 -0.01 2.62 16 33 H 0.13 2.46 4.36 -2.39 -0.01 2.45 16 34 H 0.18 6.45 1.74 -10.57 -0.02 6.43 16 35 H 0.11 5.70 6.37 -2.91 -0.02 5.69 16 36 H 0.29 12.93 8.29 -92.71 -0.77 12.16 16 37 H 0.10 4.84 8.06 -2.91 -0.02 4.81 16 38 H 0.10 4.68 7.80 -2.91 -0.02 4.66 16 39 H 0.07 1.24 7.64 -2.39 -0.02 1.22 16 40 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.13 2.12 1.54 -26.97 -0.04 2.08 16 42 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 43 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.07 1.02 7.98 -2.39 -0.02 1.00 16 45 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.08 2.00 3.77 -2.39 -0.01 1.99 16 47 H 0.02 1.00 6.05 -2.39 -0.01 0.98 16 48 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.05 2.05 6.35 -2.39 -0.02 2.03 16 Total: -1.00 -62.93 340.56 5.12 -57.81 By element: Atomic # 1 Polarization: 40.17 SS G_CDS: 0.93 Total: 41.10 kcal Atomic # 6 Polarization: -53.47 SS G_CDS: 3.77 Total: -49.70 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: -1.56 Total: -60.72 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.05 Total: -26.94 kcal Atomic # 14 Polarization: 36.43 SS G_CDS: 2.03 Total: 38.46 kcal Total: -62.93 5.12 -57.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340119382.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.846 kcal (2) G-P(sol) polarization free energy of solvation -62.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds