Wall clock time and date at job start Tue Mar 31 2020 11:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46491 * 109.47575 * 2 1 4 4 C 1.34769 * 120.00378 * 269.00571 * 3 2 1 5 5 O 1.21592 * 120.00187 * 43.07508 * 4 3 2 6 6 C 1.47647 * 120.00413 * 223.07585 * 4 3 2 7 7 C 1.40013 * 119.89444 * 331.13658 * 6 4 3 8 8 C 1.36316 * 120.10866 * 179.72036 * 7 6 4 9 9 C 1.40888 * 119.88883 * 0.52754 * 8 7 6 10 10 C 1.41111 * 120.10188 * 179.77040 * 9 8 7 11 11 H 1.07993 * 119.99993 * 8.70878 * 10 9 8 12 12 C 1.40224 * 119.99631 * 188.71146 * 10 9 8 13 13 N 1.30642 * 120.00512 * 26.77756 * 12 10 9 14 14 Si 1.86797 * 119.99857 * 206.77761 * 12 10 9 15 15 H 1.48498 * 109.47399 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47508 * 120.00225 * 14 12 10 17 17 H 1.48504 * 109.47293 * 239.99993 * 14 12 10 18 18 C 1.40890 * 119.79197 * 359.73947 * 9 8 7 19 19 C 1.36314 * 119.89681 * 0.02562 * 18 9 8 20 20 C 1.46509 * 119.99748 * 89.01052 * 3 2 1 21 21 H 1.09000 * 109.46892 * 330.37883 * 20 3 2 22 22 C 1.52992 * 109.47341 * 90.38192 * 20 3 2 23 23 C 1.53002 * 109.47215 * 180.02562 * 22 20 3 24 24 C 1.52997 * 109.46677 * 299.99882 * 23 22 20 25 25 C 1.52995 * 109.47209 * 60.00486 * 24 23 22 26 26 C 1.52999 * 109.46874 * 210.38408 * 20 3 2 27 27 H 1.09008 * 109.46701 * 299.99571 * 26 20 3 28 28 C 1.53000 * 109.47490 * 59.99651 * 26 20 3 29 29 H 1.09006 * 109.47182 * 59.99236 * 1 2 3 30 30 H 1.08991 * 109.47663 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46480 * 300.00155 * 1 2 3 32 32 H 1.09006 * 109.46480 * 239.99845 * 2 1 3 33 33 H 1.09006 * 109.47182 * 120.00764 * 2 1 3 34 34 H 1.08007 * 119.94362 * 359.97438 * 7 6 4 35 35 H 1.07996 * 120.05289 * 180.29322 * 8 7 6 36 36 H 0.97005 * 120.00524 * 180.02562 * 13 12 10 37 37 H 1.08008 * 120.04834 * 180.02562 * 18 9 8 38 38 H 1.07992 * 119.95028 * 179.97438 * 19 18 9 39 39 H 1.09003 * 109.47277 * 300.00335 * 22 20 3 40 40 H 1.09008 * 109.47398 * 59.99717 * 22 20 3 41 41 H 1.09001 * 109.47093 * 60.00254 * 23 22 20 42 42 H 1.09002 * 109.46803 * 180.02562 * 23 22 20 43 43 H 1.09005 * 109.46703 * 180.02562 * 24 23 22 44 44 H 1.09000 * 109.47294 * 299.99639 * 24 23 22 45 45 H 1.09002 * 109.47128 * 179.97438 * 25 24 23 46 46 H 1.09000 * 109.47684 * 59.99391 * 25 24 23 47 47 H 1.09001 * 109.46700 * 59.99815 * 28 26 20 48 48 H 1.08995 * 109.46968 * 179.97438 * 28 26 20 49 49 H 1.08996 * 109.46850 * 300.00102 * 28 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2622 2.0097 -1.1669 5 8 1.4784 1.9028 -2.0904 6 6 3.4809 2.8282 -1.3241 7 6 4.0504 3.4534 -0.2082 8 6 5.1788 4.2054 -0.3473 9 6 5.7657 4.3621 -1.6185 10 6 6.9310 5.1436 -1.7685 11 1 7.4543 5.5058 -0.8960 12 6 7.4096 5.4498 -3.0505 13 7 6.5840 5.4970 -4.0620 14 14 9.2275 5.7904 -3.3121 15 1 9.9441 5.6755 -2.0166 16 1 9.7824 4.8047 -4.2744 17 1 9.4013 7.1623 -3.8534 18 6 5.1857 3.7357 -2.7394 19 6 4.0600 2.9817 -2.5896 20 6 2.2419 2.0790 1.2686 21 1 1.5533 1.6945 2.0210 22 6 3.6823 1.8489 1.7304 23 6 3.9155 2.5772 3.0556 24 6 3.6749 4.0758 2.8630 25 6 2.2345 4.3059 2.4014 26 6 2.0014 3.5776 1.0756 27 1 2.6901 3.9620 0.3231 28 6 0.5610 3.8077 0.6138 29 1 -0.3634 0.5140 -0.8900 30 1 -0.3634 -1.0275 -0.0005 31 1 -0.3632 0.5139 0.8901 32 1 1.8932 -0.5139 -0.8901 33 1 1.8933 -0.5140 0.8900 34 1 3.5972 3.3362 0.7652 35 1 5.6199 4.6833 0.5148 36 1 6.9151 5.7085 -4.9489 37 1 5.6325 3.8528 -3.7157 38 1 3.6146 2.5015 -3.4482 39 1 3.8536 0.7813 1.8679 40 1 4.3709 2.2334 0.9779 41 1 3.2270 2.1923 3.8078 42 1 4.9418 2.4136 3.3843 43 1 3.8415 4.5948 3.8070 44 1 4.3635 4.4607 2.1108 45 1 2.0629 5.3736 2.2646 46 1 1.5459 3.9210 3.1535 47 1 -0.1275 3.4231 1.3662 48 1 0.3897 4.8753 0.4767 49 1 0.3948 3.2884 -0.3300 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340119386.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:19 Heat of formation + Delta-G solvation = 58.888081 kcal Electronic energy + Delta-G solvation = -28489.753308 eV Core-core repulsion = 24998.531739 eV Total energy + Delta-G solvation = -3491.221568 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.46971 -37.89280 -37.14772 -34.79436 -33.96207 -32.41510 -31.33662 -29.99147 -29.52038 -28.71205 -26.16455 -25.84598 -23.20849 -22.54707 -22.19123 -21.20261 -20.72765 -19.70616 -18.31727 -17.00572 -16.59808 -15.80374 -15.42422 -14.98368 -14.70905 -14.55510 -13.98753 -13.91698 -13.79374 -13.49704 -13.26130 -12.89842 -12.57919 -12.52291 -12.22303 -12.14517 -12.06818 -11.87809 -11.73246 -11.59474 -11.43140 -11.25939 -11.18407 -11.15149 -10.90608 -10.79894 -10.72562 -10.34290 -10.18340 -10.07712 -9.91510 -9.72872 -9.09318 -8.88976 -8.49420 -7.92790 -7.65343 -7.30874 -7.05084 -4.56634 2.26252 2.85323 2.93379 2.99002 3.04410 3.58095 3.68990 3.71025 4.43521 4.81340 4.91918 5.04321 5.20684 5.30232 5.36559 5.42882 5.52285 5.55876 5.62721 5.67036 5.70385 5.77011 5.82941 5.89875 5.92799 6.02447 6.05369 6.13161 6.19033 6.25503 6.30470 6.34854 6.38374 6.42742 6.46240 6.52891 6.64287 6.67177 6.74438 6.86128 6.92174 7.16329 7.25066 7.38220 7.46545 7.68193 7.90527 7.94118 8.05149 8.21858 8.47697 8.67186 8.82547 9.00433 9.78509 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.016429 B = 0.004582 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.888591 B = 6109.258684 C = 7026.460324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.130 3.870 3 N -0.652 5.652 4 C 0.596 3.404 5 O -0.548 6.548 6 C -0.300 4.300 7 C -0.124 4.124 8 C -0.250 4.250 9 C 0.120 3.880 10 C -0.434 4.434 11 H 0.085 0.915 12 C 0.075 3.925 13 N -0.753 5.753 14 Si 0.910 3.090 15 H -0.256 1.256 16 H -0.268 1.268 17 H -0.271 1.271 18 C -0.206 4.206 19 C -0.037 4.037 20 C 0.170 3.830 21 H 0.073 0.927 22 C -0.188 4.188 23 C -0.113 4.113 24 C -0.137 4.137 25 C -0.106 4.106 26 C -0.191 4.191 27 H 0.165 0.835 28 C -0.142 4.142 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.194 0.806 35 H 0.095 0.905 36 H 0.287 0.713 37 H 0.135 0.865 38 H 0.092 0.908 39 H 0.060 0.940 40 H 0.125 0.875 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.079 0.921 45 H 0.065 0.935 46 H 0.056 0.944 47 H 0.042 0.958 48 H 0.051 0.949 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.856 -4.477 10.532 12.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.006 3.994 3 N -0.388 5.388 4 C 0.393 3.607 5 O -0.426 6.426 6 C -0.305 4.305 7 C -0.140 4.140 8 C -0.269 4.269 9 C 0.117 3.883 10 C -0.461 4.461 11 H 0.103 0.897 12 C -0.148 4.148 13 N -0.375 5.375 14 Si 0.733 3.267 15 H -0.179 1.179 16 H -0.192 1.192 17 H -0.196 1.196 18 C -0.225 4.225 19 C -0.056 4.056 20 C 0.066 3.934 21 H 0.091 0.909 22 C -0.226 4.226 23 C -0.151 4.151 24 C -0.175 4.175 25 C -0.144 4.144 26 C -0.208 4.208 27 H 0.181 0.819 28 C -0.199 4.199 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.210 0.790 35 H 0.113 0.887 36 H 0.099 0.901 37 H 0.152 0.848 38 H 0.110 0.890 39 H 0.078 0.922 40 H 0.142 0.858 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.097 0.903 45 H 0.084 0.916 46 H 0.075 0.925 47 H 0.061 0.939 48 H 0.070 0.930 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.320 -4.477 9.751 11.567 hybrid contribution 0.658 0.084 -0.120 0.674 sum -3.662 -4.393 9.631 11.201 Atomic orbital electron populations 1.22229 0.97016 1.00959 1.02553 1.21147 0.93756 0.82924 1.01528 1.47469 1.72097 1.13789 1.05434 1.18552 0.84118 0.77643 0.80385 1.90608 1.46888 1.62462 1.42679 1.19087 1.01947 1.14363 0.95119 1.22877 0.95143 0.95372 1.00642 1.20600 0.99952 1.09366 0.97017 1.17796 0.90414 0.88675 0.91438 1.19919 1.07448 1.25853 0.92852 0.89696 1.26198 1.00557 0.92350 0.95686 1.69773 1.36741 1.29172 1.01848 0.86222 0.81655 0.78855 0.79973 1.17896 1.19245 1.19610 1.21411 0.98386 1.02148 1.00559 1.20454 0.95195 0.95802 0.94165 1.20821 0.95593 0.91772 0.85168 0.90894 1.23150 0.99197 1.00950 0.99305 1.21476 1.01320 0.95280 0.97046 1.21768 0.97459 0.96425 1.01806 1.21520 0.96506 1.00296 0.96052 1.23498 1.00747 0.94999 1.01534 0.81938 1.21810 0.95447 1.01199 1.01491 0.91626 0.92827 0.93126 0.91520 0.91568 0.79030 0.88732 0.90140 0.84797 0.88983 0.92165 0.85782 0.92560 0.91785 0.92002 0.90284 0.91617 0.92515 0.93904 0.93022 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 10.20 37.16 0.38 -1.88 16 2 C 0.13 1.88 6.14 -4.05 -0.02 1.86 16 3 N -0.65 -11.17 2.08 -167.29 -0.35 -11.52 16 4 C 0.60 12.70 4.54 -12.42 -0.06 12.64 16 5 O -0.55 -13.13 16.25 5.28 0.09 -13.04 16 6 C -0.30 -6.86 5.58 -104.73 -0.58 -7.44 16 7 C -0.12 -2.57 3.47 -39.61 -0.14 -2.71 16 8 C -0.25 -5.63 9.31 -39.27 -0.37 -6.00 16 9 C 0.12 3.02 5.70 -106.80 -0.61 2.41 16 10 C -0.43 -10.65 9.04 -37.75 -0.34 -10.99 16 11 H 0.08 1.98 7.97 -52.49 -0.42 1.56 16 12 C 0.08 1.74 5.12 -17.31 -0.09 1.65 16 13 N -0.75 -18.06 10.55 55.56 0.59 -17.47 16 14 Si 0.91 17.06 29.63 -169.99 -5.04 12.02 16 15 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 16 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 17 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 18 C -0.21 -5.28 8.83 -39.27 -0.35 -5.62 16 19 C -0.04 -0.91 9.52 -39.61 -0.38 -1.29 16 20 C 0.17 2.55 1.87 -67.93 -0.13 2.42 16 21 H 0.07 0.98 8.07 -51.93 -0.42 0.56 16 22 C -0.19 -2.72 5.12 -26.73 -0.14 -2.86 16 23 C -0.11 -1.37 5.92 -26.73 -0.16 -1.52 16 24 C -0.14 -1.73 5.66 -26.73 -0.15 -1.88 16 25 C -0.11 -1.37 5.21 -26.71 -0.14 -1.51 16 26 C -0.19 -3.00 1.47 -90.59 -0.13 -3.13 16 27 H 0.16 3.08 2.79 -111.84 -0.31 2.77 16 28 C -0.14 -2.25 8.94 37.16 0.33 -1.92 16 29 H 0.06 1.05 7.65 -51.93 -0.40 0.65 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 1.02 8.02 -51.93 -0.42 0.60 16 33 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 34 H 0.19 3.34 0.06 -93.08 -0.01 3.33 16 35 H 0.09 1.95 7.07 -52.49 -0.37 1.58 16 36 H 0.29 6.14 8.29 -40.82 -0.34 5.81 16 37 H 0.13 3.52 5.38 -52.48 -0.28 3.24 16 38 H 0.09 2.24 7.89 -52.49 -0.41 1.83 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.12 2.16 3.91 -64.74 -0.25 1.91 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.08 1.14 5.53 -51.93 -0.29 0.85 16 45 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.06 1.18 6.04 -51.93 -0.31 0.87 16 LS Contribution 359.64 15.07 5.42 5.42 Total: -1.00 -27.22 359.64 -10.03 -37.25 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: -7.67 Total: 15.10 kcal Atomic # 6 Polarization: -24.69 SS G_CDS: -3.07 Total: -27.76 kcal Atomic # 7 Polarization: -29.23 SS G_CDS: 0.24 Total: -28.99 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.09 Total: -13.04 kcal Atomic # 14 Polarization: 17.06 SS G_CDS: -5.04 Total: 12.02 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -27.22 -10.03 -37.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340119386.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.142 kcal (2) G-P(sol) polarization free energy of solvation -27.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds